RLG00000001173

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016190
Physical Location & Seq
Reverse (-)
11345856 .. 11346410
555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001173

Sequence Viewer

Length: 555 bp
ATGGATTTGCCAACAACTTCTAAATCTAAAAACGTTCGGCGAGAGAAAACCCCATGTCTCTACAAGGGCATACGAATGAGGGCTTGGGGTAAATGGGTTACAGAAATAAGAGTTCCAAAGTCTGGAGGAAGGATATGGTTGGGCTCTTATGATACTCCTGATGAGGCAGCTCGAGCCTATGATGCAGCTGTATATTGCATTTATGGTGAATGTGGGAGATTCAATTTTCCAGATTTCAGAAGGCCAGTGCTTCCTGCAGGCTCTACAGTTTCCTTGTCCAAGGGGGATATTCAGCAGATTGCCATGAATTTCGCTTCAGCTAATGTACCAGAGTCTTTGCCAGTTTCAGCTACTGTGAAAACTGAGGTACAAGCTGATACACCCACTTCTCCAAATGTACTGGTTTCTAAGGATATGGCAAGTGCATATGAGGTAAGGGTTGATCCTCTTGCCCCGACCTGTGCAAGTGGAGCAGGTTCTGCTGATCCACCTGAAGATTTCCACCTTGATGATTTCCGTATGCTGGATACAGATTGGATAGCTGATTTCTATTAG

Protein Analysis

185

Amino Acids

20.26

Weight (kDa)

5.23

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 20 - 69 1.9e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31060
fragaria_vesca FvH4_5g34550
malus_domestica MD04G1001700.v1.1
prunus_persica Prupe.1G001700_v2.0.a1
pyrus_communis pycom04g00230
rosa_chinensis RchiOBHm_Chr7g0235201
rosa_laevigata RLG00000001173
rosa_multiflora Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii Rroxscaffold_3G00226180
rosa_rugosa Rorug07G0289100
rosa_samantha Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana Rw7G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 122
AclI AACGTT 1 cut(s) 33
AclWI GGATC 2 cut(s) 437, 479
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 300, 513
AfaI GTAC 3 cut(s) 327, 369, 399
AfiI CCNNNNNNNGG 2 cut(s) 122, 523
AgsI TTSAA 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AluBI AGCT 6 cut(s) 170, 188, 320, 350, 374, 542
AluI AGCT 6 cut(s) 170, 188, 320, 350, 374, 542
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 2 cut(s) 437, 479
AlwNI CAGNNNCTG 2 cut(s) 353, 479
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 167, 185
ApoI RAATTY 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 171
BanII GRGCYC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 179, 197
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 255, 264
BfuAI ACCTGC 1 cut(s) 464
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 2 cut(s) 168, 186
BlsI GCNGC 2 cut(s) 169, 187
BmeT110I CYCGRG 1 cut(s) 171
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 523
Bse1I ACTGG 3 cut(s) 245, 341, 405
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 122, 523
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 3 cut(s) 245, 341, 405
BseXI GCAGC 2 cut(s) 179, 197
BshFI GGCC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 171
BslI CCNNNNNNNGG 2 cut(s) 122, 523
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 2 cut(s) 442, 484
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 355
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 2 cut(s) 437, 479
BsrI ACTGG 3 cut(s) 245, 341, 405
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 442, 484
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 268, 355
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 363, 408
BstKTI GATC 2 cut(s) 445, 487
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 2 cut(s) 442, 484
BstMWI GCNNNNNNNGC 4 cut(s) 173, 182, 470, 479
BstSFI CTRYAG 2 cut(s) 255, 264
BstV1I GCAGC 2 cut(s) 179, 197
BsuI GTATCC 1 cut(s) 520
BsuRI GGCC 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 259
CaiI CAGNNNCTG 2 cut(s) 353, 479
Csp6I GTAC 3 cut(s) 326, 368, 398
CviAII CATG 2 cut(s) 54, 304
CviQI GTAC 3 cut(s) 326, 368, 398
DdeI CTNAG 2 cut(s) 363, 408
DpnI GATC 2 cut(s) 444, 486
DpnII GATC 2 cut(s) 442, 484
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 300, 513
Eco88I CYCGRG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 57, 307
FatI CATG 2 cut(s) 53, 303
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 168, 186
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 168, 186
GluI GCNGC 2 cut(s) 168, 186
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 244
Hin1II CATG 2 cut(s) 57, 307
HinfI GANTC 2 cut(s) 219, 332
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 3 cut(s) 123, 158, 230
HpyAV CCTTC 2 cut(s) 123, 234
HpyCH4III ACNGT 2 cut(s) 268, 355
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 185, 198, 257, 425, 464
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 182, 470, 479
HpyF3I CTNAG 2 cut(s) 363, 408
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 57, 307
Kzo9I GATC 2 cut(s) 442, 484
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 2 cut(s) 179, 197
LweI GCATC 1 cut(s) 172
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 97
MalI GATC 2 cut(s) 444, 486
MboI GATC 2 cut(s) 442, 484
MboII GAAGA 1 cut(s) 506
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 223, 307
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 6 cut(s) 72, 119, 157, 358, 424, 456
MslI CAYNNNNRTG 2 cut(s) 74, 507
MspA1I CMGCKG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 173, 182, 470, 479
NdeI CATATG 1 cut(s) 427
NdeII GATC 2 cut(s) 442, 484
NlaIII CATG 2 cut(s) 57, 307
PaeR7I CTCGAG 1 cut(s) 171
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 2 cut(s) 169, 187
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp1406I AACGTT 1 cut(s) 33
PspXI VCTCGAGB 1 cut(s) 171
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 2 cut(s) 353, 479
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 3 cut(s) 327, 369, 399
RsaNI GTAC 3 cut(s) 326, 368, 398
RseI CAYNNNNRTG 2 cut(s) 74, 507
SatI GCNGC 2 cut(s) 168, 186
Sau3AI GATC 2 cut(s) 442, 484
SbfI CCTGCAGG 1 cut(s) 259
SchI GAGTC 1 cut(s) 341
SdaI CCTGCAGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 2 cut(s) 255, 264
Sfr274I CTCGAG 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 74, 507
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse8387I CCTGCAGG 1 cut(s) 259
Sse9I AATT 2 cut(s) 223, 307
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 2 cut(s) 268, 355
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 223, 307
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 1 cut(s) 219
TscAI CASTG 1 cut(s) 252
TseI GCWGC 2 cut(s) 167, 185
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.