Rroxscaffold_3G00226180

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016190
Physical Location & Seq
Reverse (-)
9606214 .. 9607164
951 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00226180.1

Sequence Viewer

Length: 552 bp
ATGGATTTGCCAACAACTTCTAAATCTAAAAAAGTTCGGCAAGAAAAAACCCCATGTCTCTACAAGGGCATACGAATGAGGGCTTGGGGTAAATGGGTTACAGAAATAAGAGTTCCAAAGTCTGGAGGAAGGATATGGTTGGGCTCTTATGATACTCCTGACGAGGCAGCTCGAGCCTATGATGCAGCTGTATATTGCATTTATGGTGAATGTGGGAGATTCAATTTTCCAGATTTCAGAAGGCCAGTGCTTCCTGCAGGCTCTATGGTTTCCTTGTCCAAGGGGGATATTCAGCAGATTGCCATGAATTTCGCTTCAGCTAATGTACCAGAGTCTTTGCCGGTTTCAGCTGTGAAAACTGAGGTACAAGCTGATACACCCACTTCTCCAAATGTACTGGTTTCTAAGGATATGGCAAGTGCATATGAGGTAAAGGTTGATCCTCTTGCCCTGACCTGTGCAAGTGGAGCAGGTTCTGCTGATGCGCCTGAAGATTTCCACCTTGATGATTTCCGTATGCTGGATACAGATTGGATAGCTGATTTCTATTAG

Protein Analysis

183

Amino Acids

20.14

Weight (kDa)

5.23

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 20 - 69 1.9e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31060
fragaria_vesca FvH4_5g34550
malus_domestica MD04G1001700.v1.1
prunus_persica Prupe.1G001700_v2.0.a1
pyrus_communis pycom04g00230
rosa_chinensis RchiOBHm_Chr7g0235201
rosa_laevigata RLG00000001173
rosa_multiflora Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii Rroxscaffold_3G00226180
rosa_rugosa Rorug07G0289100
rosa_samantha Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana Rw7G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 122
AclWI GGATC 1 cut(s) 434
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 2 cut(s) 300, 510
AfaI GTAC 3 cut(s) 327, 366, 396
AfiI CCNNNNNNNGG 2 cut(s) 122, 520
AgsI TTSAA 1 cut(s) 223
AjuI GAANNNNNNNTTGG 2 cut(s) 67, 99
AluBI AGCT 6 cut(s) 170, 188, 320, 350, 371, 539
AluI AGCT 6 cut(s) 170, 188, 320, 350, 371, 539
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 167, 185
ApoI RAATTY 1 cut(s) 307
AspLEI GCGC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 218
AvaI CYCGRG 1 cut(s) 171
BanII GRGCYC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 179, 197
BciVI GTATCC 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 62
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 461
BfuI GTATCC 1 cut(s) 517
BisI GCNGC 2 cut(s) 168, 186
BlsI GCNGC 2 cut(s) 169, 187
BmeT110I CYCGRG 1 cut(s) 171
BmsI GCATC 2 cut(s) 172, 472
BpmI CTGGAG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 520
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 245, 402
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 2 cut(s) 122, 520
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 245, 402
BseXI GCAGC 2 cut(s) 179, 197
BshFI GGCC 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 341
BslI CCNNNNNNNGG 2 cut(s) 122, 520
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 439
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 352
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 2 cut(s) 245, 402
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 2 cut(s) 360, 405
BstHHI GCGC 1 cut(s) 487
BstKTI GATC 1 cut(s) 442
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 439
BstMWI GCNNNNNNNGC 4 cut(s) 173, 182, 467, 476
BstSFI CTRYAG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 179, 197
BsuI GTATCC 1 cut(s) 517
BsuRI GGCC 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 252
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 476
CfoI GCGC 1 cut(s) 487
Cfr10I RCCGGY 1 cut(s) 340
Csp6I GTAC 3 cut(s) 326, 365, 395
CviAII CATG 2 cut(s) 54, 304
CviQI GTAC 3 cut(s) 326, 365, 395
DdeI CTNAG 2 cut(s) 360, 405
DpnI GATC 1 cut(s) 441
DpnII GATC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 146
Eco57I CTGAAG 2 cut(s) 300, 510
Eco88I CYCGRG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 146
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 57, 307
FatI CATG 2 cut(s) 53, 303
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 2 cut(s) 168, 186
FriOI GRGCYC 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 168, 186
GlaI GCGC 1 cut(s) 486
GluI GCNGC 2 cut(s) 168, 186
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 341
HhaI GCGC 1 cut(s) 487
Hin1II CATG 2 cut(s) 57, 307
Hin6I GCGC 1 cut(s) 485
HinP1I GCGC 1 cut(s) 485
HinfI GANTC 2 cut(s) 219, 332
HpaII CCGG 1 cut(s) 341
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 3 cut(s) 123, 158, 230
HpyAV CCTTC 2 cut(s) 123, 234
HpyCH4V TGCA 5 cut(s) 185, 198, 257, 422, 461
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 182, 467, 476
HpyF3I CTNAG 2 cut(s) 360, 405
Hsp92II CATG 2 cut(s) 57, 307
HspAI GCGC 1 cut(s) 485
Kzo9I GATC 1 cut(s) 439
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 2 cut(s) 179, 197
LweI GCATC 2 cut(s) 172, 472
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 441
MboI GATC 1 cut(s) 439
MboII GAAGA 1 cut(s) 503
MhlI GDGCHC 1 cut(s) 146
MluCI AATT 2 cut(s) 223, 307
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 6 cut(s) 72, 119, 157, 355, 421, 453
MslI CAYNNNNRTG 2 cut(s) 74, 504
MspA1I CMGCKG 2 cut(s) 188, 350
MspI CCGG 1 cut(s) 341
MwoI GCNNNNNNNGC 4 cut(s) 173, 182, 467, 476
NdeI CATATG 1 cut(s) 424
NdeII GATC 1 cut(s) 439
NlaIII CATG 2 cut(s) 57, 307
PaeR7I CTCGAG 1 cut(s) 171
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 2 cut(s) 169, 187
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 171
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 1 cut(s) 476
PvuII CAGCTG 2 cut(s) 188, 350
RsaI GTAC 3 cut(s) 327, 366, 396
RsaNI GTAC 3 cut(s) 326, 365, 395
RseI CAYNNNNRTG 2 cut(s) 74, 504
SatI GCNGC 2 cut(s) 168, 186
Sau3AI GATC 1 cut(s) 439
SbfI CCTGCAGG 1 cut(s) 259
SchI GAGTC 1 cut(s) 341
SdaI CCTGCAGG 1 cut(s) 259
SduI GDGCHC 1 cut(s) 146
SfaNI GCATC 2 cut(s) 172, 472
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 171
SmiMI CAYNNNNRTG 2 cut(s) 74, 504
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse8387I CCTGCAGG 1 cut(s) 259
Sse9I AATT 2 cut(s) 223, 307
StyI CCWWGG 1 cut(s) 279
TaqI TCGA 1 cut(s) 172
TasI AATT 2 cut(s) 223, 307
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 1 cut(s) 219
TscAI CASTG 1 cut(s) 252
TseI GCWGC 2 cut(s) 167, 185
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.