FvH4_5g34550

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016190
Physical Location & Seq
Forward (+)
25211129 .. 25211910
782 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34550.t1

Sequence Viewer

Length: 630 bp
ATGCATTTGGGAAACTCCTTCTTGATACAAACTCACCACGTGACAGTATGTTTGCCGCCACACCTCTTGACCCCCATTCCTATGGATTTGCCAACAACTTCTAAATCTAAGAAAGTTCGGCGAGAGAAAACCCCATGTCTCTACAAGGGCATACGAATGAGAGTTTGGGGTAAATGGGTTTCAGAAATAAGAGTTCCAAAGTCGGGAGGAAGGATATGGTTGGGCTCTTATGATGCTCCTGAAAAGGCAGCTCGAGCCTATGATGCAGCCCTATATTGCATTTATGGTGAATGTGGGCGATTCAATTTTCCAGGTGATAGAAGGCCAGTGCTTCCTGCAGGCTCTGCAGTTTCCTTGTCCAAGTTTGATATTCAGCAGATTGCCATGAATTTCGCTTCATCTTATGTACCAGTGTCTTTGCCGGTGTCAGCTACTATAAAAGCTGAGGCACAAGCTGATACACCCACTTCTCCACTAGTTTCTAAGGATATGGCAAGTAAATATGAGGTAAAGGTTGATCCCCTTGCCCCAACCTGTGCAACAGGAGTAGGTTCTTCTGATCCACCAGAAGATTTCCAACTGGATGATTTCCTTGTTTTGGATACAGATTGGATATCTGATTTCTATTAG

Protein Analysis

210

Amino Acids

23.05

Weight (kDa)

7.62

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 47 - 96 5.6e-10 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31060
fragaria_vesca FvH4_5g34550
malus_domestica MD04G1001700.v1.1
prunus_persica Prupe.1G001700_v2.0.a1
pyrus_communis pycom04g00230
rosa_chinensis RchiOBHm_Chr7g0235201
rosa_laevigata RLG00000001173
rosa_multiflora Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii Rroxscaffold_3G00226180
rosa_rugosa Rorug07G0289100
rosa_samantha Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana Rw7G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclWI GGATC 2 cut(s) 512, 554
AcsI RAATTY 1 cut(s) 388
AcvI CACGTG 1 cut(s) 40
AdeI CACNNNGTG 1 cut(s) 40
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 2 cut(s) 203, 598
AgsI TTSAA 1 cut(s) 304
AhlI ACTAGT 1 cut(s) 475
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 148, 180
AluBI AGCT 4 cut(s) 251, 431, 443, 455
AluI AGCT 4 cut(s) 251, 431, 443, 455
Alw26I GTCTC 1 cut(s) 143
AlwI GGATC 2 cut(s) 512, 554
AlwNI CAGNNNCTG 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 252
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 248, 266
ApoI RAATTY 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AsuHPI GGTGA 3 cut(s) 26, 299, 326
AvaI CYCGRG 1 cut(s) 252
BanII GRGCYC 1 cut(s) 227
BbrPI CACGTG 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 260, 278
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 143
BcuI ACTAGT 1 cut(s) 475
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 2 cut(s) 336, 345
BfuI GTATCC 1 cut(s) 595
BisI GCNGC 3 cut(s) 56, 249, 267
BlsI GCNGC 3 cut(s) 57, 250, 268
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 252
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 223, 253
Bpu10I CCTNAGC 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 598
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 3 cut(s) 326, 410, 585
BseBI CCWGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 2 cut(s) 203, 598
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 3 cut(s) 326, 410, 585
BseXI GCAGC 2 cut(s) 260, 278
BshFI GGCC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 2 cut(s) 203, 598
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 325
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 227
Bsp143I GATC 2 cut(s) 517, 559
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 1 cut(s) 436
BspMAI CTGCAG 2 cut(s) 340, 349
BspPI GGATC 2 cut(s) 512, 554
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 3 cut(s) 326, 410, 585
BssAI RCCGGY 1 cut(s) 421
BssMI GATC 2 cut(s) 517, 559
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 344
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 108, 444, 483
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 2 cut(s) 520, 562
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 517, 559
BstMWI GCNNNNNNNGC 3 cut(s) 254, 263, 344
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 336, 345
BstV1I GCAGC 2 cut(s) 260, 278
BstXI CCANNNNNNTGG 1 cut(s) 82
BsuI GTATCC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 325
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 333, 417
Cac8I GCNNGC 1 cut(s) 340
CaiI CAGNNNCTG 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 421
Csp6I GTAC 1 cut(s) 407
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 135, 385
CviJI RGCY 9 cut(s) 225, 251, 257, 269, 325, 342, 431, 443, 455
CviKI_1 RGCY 9 cut(s) 225, 251, 257, 269, 325, 342, 431, 443, 455
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 3 cut(s) 108, 444, 483
DpnI GATC 2 cut(s) 519, 561
DpnII GATC 2 cut(s) 517, 559
DraIII CACNNNGTG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 227
Eco32I GATATC 1 cut(s) 615
Eco72I CACGTG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 227
FaeI CATG 2 cut(s) 138, 388
FatI CATG 2 cut(s) 134, 384
Fnu4HI GCNGC 3 cut(s) 56, 249, 267
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 56, 249, 267
FspBI CTAG 1 cut(s) 476
GluI GCNGC 3 cut(s) 56, 249, 267
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 422
Hin1II CATG 2 cut(s) 138, 388
HinfI GANTC 1 cut(s) 300
HpaII CCGG 1 cut(s) 422
HphI GGTGA 3 cut(s) 26, 299, 326
Hpy188I TCNGA 3 cut(s) 184, 559, 619
Hpy188III TCNNGA 4 cut(s) 22, 67, 204, 239
HpyAV CCTTC 3 cut(s) 28, 204, 315
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 4, 266, 279, 338, 347, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 263, 344
HpyF3I CTNAG 3 cut(s) 108, 444, 483
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 138, 388
Kzo9I GATC 2 cut(s) 517, 559
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 2 cut(s) 260, 278
LweI GCATC 2 cut(s) 223, 253
MaeI CTAG 1 cut(s) 476
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 519, 561
MboI GATC 2 cut(s) 517, 559
MboII GAAGA 2 cut(s) 546, 581
MhlI GDGCHC 1 cut(s) 227
MluCI AATT 2 cut(s) 304, 388
MmeI TCCRAC 1 cut(s) 601
MnlI CCTC 4 cut(s) 74, 200, 439, 499
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 2 cut(s) 80, 155
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 254, 263, 344
NdeII GATC 2 cut(s) 517, 559
NlaIII CATG 2 cut(s) 138, 388
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 252
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 3 cut(s) 57, 250, 268
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 310
PspCI CACGTG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 310
PspXI VCTCGAGB 1 cut(s) 252
PstI CTGCAG 2 cut(s) 340, 349
PstNI CAGNNNCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 80, 155
SatI GCNGC 3 cut(s) 56, 249, 267
Sau3AI GATC 2 cut(s) 517, 559
SbfI CCTGCAGG 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 312
SdaI CCTGCAGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 2 cut(s) 223, 253
SfcI CTRYAG 2 cut(s) 336, 345
Sfr274I CTCGAG 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 252
SmiMI CAYNNNNRTG 2 cut(s) 80, 155
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
SpeI ACTAGT 1 cut(s) 475
Sse8387I CCTGCAGG 1 cut(s) 340
Sse9I AATT 2 cut(s) 304, 388
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 310
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 253
TasI AATT 2 cut(s) 304, 388
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 300
TscAI CASTG 2 cut(s) 333, 417
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 248, 266
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 387, 401
TspRI CASTG 2 cut(s) 333, 417
XapI RAATTY 1 cut(s) 388
XhoI CTCGAG 1 cut(s) 252
XspI CTAG 1 cut(s) 476
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.