Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016190

Physical Location & Seq

Genomic Coordinates Reverse (-)

213970 .. 214521

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATTTGGGGACAACACCTACTTCCAAAAAGGTCCGGCGAGAGAGAACCCCAGGACGCTATAAGGGCGTTCGAATGAGGGCTTGGGGTAAGTGGGTTTCTGAAATCAGGCTTCCAAAGTCAGGAGACAGGATATGGTTGGGCTCTTATGATGCCCCAGACAAGGCAGCTCGGGCCCATGATGCTGCTGCGTATTGCATTCATGGTGAACGTGCAGAGTTCAATTTTCCAAAGAATAGAAGGCCAGTGCTCTCTAAGGGCTCGACAGTTTCCTTGTCCAAGAAGGATATACAGACTATTGCAACGGATTTTTCTTCAGCTGATGTATCAGAGTCTACTCCAGTGTCGTCTACAATGACAACCCAGGTTCCATCTGATAAACCAGCTTCTCCAAATTTACTGGTTTCTAAGGGTATGGCAAGTGCATATGAAGTGGATAGTGGTTCATTTGCCCCAAGTTGCACTACTGGAGAAGCTGTTGCTTCACTAGAAAATATACAATTGGATGATTTCCTCATGCTAGATACAGATTGGATAGCTGATTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

184

Amino Acids

20.04

Weight (kDa)

7.74

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31060
fragaria_vesca	FvH4_5g34550
malus_domestica	MD04G1001700.v1.1
prunus_persica	Prupe.1G001700_v2.0.a1
pyrus_communis	pycom04g00230
rosa_chinensis	RchiOBHm_Chr7g0235201
rosa_laevigata	RLG00000001173
rosa_multiflora	Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii	Rroxscaffold_3G00226180
rosa_rugosa	Rorug07G0289100
rosa_samantha	Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana	Rw7G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	335, 350
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	122, 163
AgsI	TTSAA	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	52, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AluBI	AGCT	5 cut(s)	170, 320, 386, 476, 539
AluI	AGCT	5 cut(s)	170, 320, 386, 476, 539
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	2 cut(s)	174, 242
ApaI	GGGCCC	1 cut(s)	178
ApeKI	GCWGC	3 cut(s)	167, 185, 188
ApoI	RAATTY	1 cut(s)	394
AspS9I	GGNCC	3 cut(s)	34, 174, 175
AsuHPI	GGTGA	1 cut(s)	218
AsuII	TTCGAA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	171
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	178
BanII	GRGCYC	3 cut(s)	146, 178, 263
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	172, 175, 179
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	2 cut(s)	54, 365
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	2 cut(s)	488, 521
BisI	GCNGC	3 cut(s)	168, 186, 189
BlsI	GCNGC	3 cut(s)	169, 187, 190
Bme1390I	CCNGG	2 cut(s)	54, 365
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	3 cut(s)	34, 174, 175
BmiI	GGNNCC	2 cut(s)	176, 369
BmrFI	CCNGG	2 cut(s)	54, 365
BmsI	GCATC	2 cut(s)	142, 172
BpmI	CTGGAG	2 cut(s)	324, 489
Bpu14I	TTCGAA	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	52, 363
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 163
Bse1I	ACTGG	4 cut(s)	245, 341, 405, 472
BseBI	CCWGG	2 cut(s)	54, 365
BseDI	CCNNGG	2 cut(s)	52, 363
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	122, 163
BseNI	ACTGG	4 cut(s)	245, 341, 405, 472
BseSI	GKGCMC	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	172, 175, 179
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	176, 244
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	2 cut(s)	122, 163
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	176, 244
BsoBI	CYCGRG	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	73
Bsp120I	GGGCCC	1 cut(s)	174
Bsp1286I	GDGCHC	4 cut(s)	146, 178, 252, 263
BspANI	GGCC	2 cut(s)	176, 244
BspLI	GGNNCC	2 cut(s)	176, 369
BspT104I	TTCGAA	1 cut(s)	73
BsrI	ACTGG	4 cut(s)	245, 341, 405, 472
BssECI	CCNNGG	2 cut(s)	52, 363
Bst2UI	CCWGG	2 cut(s)	54, 365
Bst4CI	ACNGT	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	255, 408
BstF5I	GGATG	1 cut(s)	511
BstMAI	GTCTC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 173, 182
BstNI	CCWGG	2 cut(s)	54, 365
BstSCI	CCNGG	2 cut(s)	52, 363
BstSLI	GKGCMC	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	172, 175, 179
BsuRI	GGCC	2 cut(s)	176, 244
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	252, 348
Cfr13I	GGNCC	3 cut(s)	34, 174, 175
CseI	GACGC	1 cut(s)	66
CviAII	CATG	3 cut(s)	179, 203, 517
DdeI	CTNAG	2 cut(s)	255, 408
Eco24I	GRGCYC	3 cut(s)	146, 178, 263
Eco47I	GGWCC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	300
Eco88I	CYCGRG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	52, 363
EcoT38I	GRGCYC	3 cut(s)	146, 178, 263
FaeI	CATG	3 cut(s)	182, 206, 520
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	3 cut(s)	178, 202, 516
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	335, 350
Fnu4HI	GCNGC	3 cut(s)	168, 186, 189
FokI	GGATG	1 cut(s)	518
FriOI	GRGCYC	3 cut(s)	146, 178, 263
Fsp4HI	GCNGC	3 cut(s)	168, 186, 189
FspBI	CTAG	2 cut(s)	488, 521
GluI	GCNGC	3 cut(s)	168, 186, 189
GsuI	CTGGAG	2 cut(s)	324, 489
HaeIII	GGCC	2 cut(s)	176, 244
HapII	CCGG	1 cut(s)	37
HgaI	GACGC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	182, 206, 520
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	209, 336, 351
Hpy188I	TCNGA	3 cut(s)	103, 331, 376
Hpy188III	TCNNGA	1 cut(s)	123
Hpy8I	GTNNAC	3 cut(s)	209, 336, 351
HpyAV	CCTTC	2 cut(s)	234, 277
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	198, 215, 302, 425, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 173, 182
HpyF3I	CTNAG	2 cut(s)	255, 408
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	182, 206, 520
Lsp1109I	GCAGC	3 cut(s)	172, 175, 179
LweI	GCATC	2 cut(s)	142, 172
MaeI	CTAG	2 cut(s)	488, 521
MaeII	ACGT	1 cut(s)	211
MboII	GAAGA	1 cut(s)	306
MfeI	CAATTG	1 cut(s)	500
MhlI	GDGCHC	4 cut(s)	146, 178, 252, 263
MluCI	AATT	3 cut(s)	223, 394, 500
MlyI	GAGTC	1 cut(s)	341
MnlI	CCTC	2 cut(s)	72, 524
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	2 cut(s)	54, 365
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	54, 365
MwoI	GCNNNNNNNGC	3 cut(s)	66, 173, 182
NdeI	CATATG	1 cut(s)	427
NlaIII	CATG	3 cut(s)	182, 206, 520
NlaIV	GGNNCC	2 cut(s)	176, 369
NspV	TTCGAA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	169, 187, 190
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	52, 363
PspGI	CCWGG	2 cut(s)	52, 363
PspN4I	GGNNCC	2 cut(s)	176, 369
PspOMI	GGGCCC	1 cut(s)	174
PspPI	GGNCC	3 cut(s)	34, 174, 175
PvuII	CAGCTG	1 cut(s)	320
SatI	GCNGC	3 cut(s)	168, 186, 189
Sau96I	GGNCC	3 cut(s)	34, 174, 175
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	54, 365
SduI	GDGCHC	4 cut(s)	146, 178, 252, 263
SetI	ASST	9 cut(s)	22, 36, 172, 214, 322, 369, 388, 478, 541
SfaNI	GCATC	2 cut(s)	142, 172
SfuI	TTCGAA	1 cut(s)	73
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	3 cut(s)	223, 394, 500
SspMI	CTAG	2 cut(s)	488, 521
StyD4I	CCNGG	2 cut(s)	52, 363
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	73, 263
TasI	AATT	3 cut(s)	223, 394, 500
TscAI	CASTG	2 cut(s)	252, 348
TseI	GCWGC	3 cut(s)	167, 185, 188
TspDTI	ATGAA	3 cut(s)	191, 435, 444
TspGWI	ACGGA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	252, 348
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	394
XmiI	GTMKAC	2 cut(s)	335, 350
XspI	CTAG	2 cut(s)	488, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.