Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003211.1

Orthogroup ID

OG0016190

Physical Location & Seq

Genomic Coordinates Reverse (-)

85365 .. 85844

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003211.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgagggcttggggcaaatgggttacagaaataagagttccaaagtctggaggaaggatatggttgggctcttatgatactcctgacgaggcagctcgagcctatgatgcagctgtatattgcatttatggtgaatgtgggagattcaattttccagatttcagaaggccagtgcttcctgcaggctcgacggtttccttgtccaagggggatattcagcagattgccatgaagttcgcttcagctaatgtaccagagtctttgccggtttcagctactgtgaaaactgaggtacaagctgatacacccgcttctccaaatgtattggtttctaaggatatggcaagtgcatatgaggtaaaggttgatcctcttgccccgacctatgcaagtggagcaggttctactgatccacatgaagatttccaccttgatgatttccgtatgctggatacagattggatagctgatttctattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

159

Amino Acids

17.45

Weight (kDa)

4.72

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31060
fragaria_vesca	FvH4_5g34550
malus_domestica	MD04G1001700.v1.1
prunus_persica	Prupe.1G001700_v2.0.a1
pyrus_communis	pycom04g00230
rosa_chinensis	RchiOBHm_Chr7g0235201
rosa_laevigata	RLG00000001173
rosa_multiflora	Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii	Rroxscaffold_3G00226180
rosa_rugosa	Rorug07G0289100
rosa_samantha	Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana	Rw7G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	1 cut(s)	309
AclWI	GGATC	2 cut(s)	362, 404
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	2 cut(s)	252, 294
AfiI	CCNNNNNNNGG	2 cut(s)	47, 448
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	6 cut(s)	95, 113, 245, 275, 299, 467
AluI	AGCT	6 cut(s)	95, 113, 245, 275, 299, 467
AlwI	GGATC	2 cut(s)	362, 404
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	92, 110
AsuHPI	GGTGA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	96
BanII	GRGCYC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	104, 122
BciVI	GTATCC	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	180
BfuAI	ACCTGC	1 cut(s)	389
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	2 cut(s)	93, 111
BlsI	GCNGC	2 cut(s)	94, 112
BmeT110I	CYCGRG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 448
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	47, 448
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	104, 122
BshFI	GGCC	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	47, 448
BsnI	GGCC	1 cut(s)	169
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	367, 409
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	362, 404
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	367, 409
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	193, 280
BstC8I	GCNNGC	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	288, 333
BstKTI	GATC	2 cut(s)	370, 412
BstMBI	GATC	2 cut(s)	367, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 107, 395
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	104, 122
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	184
CaiI	CAGNNNCTG	1 cut(s)	278
Cfr10I	RCCGGY	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	251, 293
CviAII	CATG	2 cut(s)	229, 416
CviQI	GTAC	2 cut(s)	251, 293
DdeI	CTNAG	2 cut(s)	288, 333
DpnI	GATC	2 cut(s)	369, 411
DpnII	GATC	2 cut(s)	367, 409
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	96
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	232, 419
FatI	CATG	2 cut(s)	228, 415
FauI	CCCGC	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	93, 111
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	93, 111
GluI	GCNGC	2 cut(s)	93, 111
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	232, 419
HinfI	GANTC	2 cut(s)	144, 257
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	48, 83, 155
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	48, 159
HpyCH4III	ACNGT	2 cut(s)	193, 280
HpyCH4V	TGCA	5 cut(s)	110, 123, 182, 350, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 107, 395
HpyF3I	CTNAG	2 cut(s)	288, 333
Hsp92II	CATG	2 cut(s)	232, 419
Kzo9I	GATC	2 cut(s)	367, 409
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	2 cut(s)	104, 122
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	369, 411
MboI	GATC	2 cut(s)	367, 409
MboII	GAAGA	1 cut(s)	431
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	266
MnlI	CCTC	5 cut(s)	44, 82, 283, 349, 381
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	98, 107, 395
NdeI	CATATG	1 cut(s)	352
NdeII	GATC	2 cut(s)	367, 409
NlaIII	CATG	2 cut(s)	232, 419
PaeR7I	CTCGAG	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	94, 112
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	252, 294
RsaNI	GTAC	2 cut(s)	251, 293
RseI	CAYNNNNRTG	1 cut(s)	432
SatI	GCNGC	2 cut(s)	93, 111
Sau3AI	GATC	2 cut(s)	367, 409
SbfI	CCTGCAGG	1 cut(s)	184
SchI	GAGTC	1 cut(s)	266
SdaI	CCTGCAGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	97
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse8387I	CCTGCAGG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	193, 280
TaqI	TCGA	2 cut(s)	97, 188
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	177
TseI	GCWGC	2 cut(s)	92, 110
TspDTI	ATGAA	2 cut(s)	245, 432
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.