MD04G1001700.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0016190
Physical Location & Seq
Reverse (-)
217921 .. 219720
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1001700.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGATATGGGGAGAACCTCTACTTTGAAAAAGGTTTGGCGACAGAGAGCCCCAGGACACTATAAGGGTGTTCAAATGAGGGCTTGGGGTAGATGGGTTTCCGAAATCAGGCTTCCAAAATCCGGGATCAAGATATGGTTGGGCACTTATGATGCCCCAGACCAGGCAGCTCGAGCCTACGATGCTGCTGTGTATTCCCTTCCCCTTTCCCCATTCCTAAGAAAGGATATTTGCTTGTTTTTTGAACTGTTGTGTGTTTTTAATGACTTGGCTTTTCTTTTCAAGTGTTGGTACATGAATAAACGATATGATGCTTGA

Protein Analysis

106

Amino Acids

12.36

Weight (kDa)

9.67

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 20 - 65 5.5e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31060
fragaria_vesca FvH4_5g34550
malus_domestica MD04G1001700.v1.1
prunus_persica Prupe.1G001700_v2.0.a1
pyrus_communis pycom04g00230
rosa_chinensis RchiOBHm_Chr7g0235201
rosa_laevigata RLG00000001173
rosa_multiflora Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii Rroxscaffold_3G00226180
rosa_rugosa Rorug07G0289100
rosa_samantha Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana Rw7G036880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 134
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 4 cut(s) 108, 122, 163, 223
AgsI TTSAA 4 cut(s) 28, 74, 245, 283
AjnI CCWGG 2 cut(s) 52, 162
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 167, 185
AsuC2I CCSGG 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 172, 179
BccI CCATC 1 cut(s) 87
BciT130I CCWGG 2 cut(s) 54, 164
BcnI CCSGG 1 cut(s) 124
BisI GCNGC 2 cut(s) 168, 186
BlsI GCNGC 2 cut(s) 169, 187
Bme1390I CCNGG 3 cut(s) 54, 124, 164
BmeT110I CYCGRG 1 cut(s) 171
BmrFI CCNGG 3 cut(s) 54, 124, 164
BmsI GCATC 3 cut(s) 142, 172, 301
BpuMI CCSGG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 122, 163, 223
BseBI CCWGG 2 cut(s) 54, 164
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 4 cut(s) 108, 122, 163, 223
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 2 cut(s) 172, 179
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 1 cut(s) 123
BslI CCNNNNNNNGG 4 cut(s) 108, 122, 163, 223
BsoBI CYCGRG 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 52, 146
Bsp143I GATC 1 cut(s) 126
BspPI GGATC 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 54, 164
Bst4CI ACNGT 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 218
BstENI CCTNNNNNAGG 1 cut(s) 221
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 173, 182
BstNI CCWGG 2 cut(s) 54, 164
BstSCI CCNGG 3 cut(s) 52, 122, 162
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 172, 179
Csp6I GTAC 1 cut(s) 292
CviAII CATG 1 cut(s) 295
CviJI RGCY 6 cut(s) 50, 83, 112, 170, 176, 272
CviKI_1 RGCY 6 cut(s) 50, 83, 112, 170, 176, 272
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 52, 162
EcoT38I GRGCYC 1 cut(s) 52
FaeI CATG 1 cut(s) 298
FaiI YATR 6 cut(s) 8, 63, 136, 150, 296, 309
FatI CATG 1 cut(s) 294
Fnu4HI GCNGC 2 cut(s) 168, 186
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 2 cut(s) 168, 186
GluI GCNGC 2 cut(s) 168, 186
HapII CCGG 1 cut(s) 123
Hin1II CATG 1 cut(s) 298
HpaII CCGG 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 182
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 1 cut(s) 298
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 7 cut(s) 39, 66, 94, 136, 149, 171, 176
Lsp1109I GCAGC 2 cut(s) 172, 179
LweI GCATC 3 cut(s) 142, 172, 301
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 2 cut(s) 52, 146
MnlI CCTC 2 cut(s) 28, 72
MseI TTAA 1 cut(s) 261
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 3 cut(s) 54, 124, 164
MvaI CCWGG 2 cut(s) 54, 164
MwoI GCNNNNNNNGC 2 cut(s) 173, 182
NciI CCSGG 1 cut(s) 124
NdeII GATC 1 cut(s) 126
NlaIII CATG 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 171
PfoI TCCNGGA 1 cut(s) 122
PkrI GCNGC 2 cut(s) 169, 187
Psp6I CCWGG 2 cut(s) 52, 162
PspGI CCWGG 2 cut(s) 52, 162
PspXI VCTCGAGB 1 cut(s) 171
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 261
SatI GCNGC 2 cut(s) 168, 186
Sau3AI GATC 1 cut(s) 126
ScrFI CCNGG 3 cut(s) 54, 124, 164
SduI GDGCHC 2 cut(s) 52, 146
SetI ASST 3 cut(s) 20, 36, 172
SfaNI GCATC 3 cut(s) 142, 172, 301
Sfr274I CTCGAG 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 52, 122, 162
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 172
Tru1I TTAA 1 cut(s) 261
Tru9I TTAA 1 cut(s) 261
TseI GCWGC 2 cut(s) 167, 185
TspDTI ATGAA 1 cut(s) 311
XagI CCTNNNNNAGG 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.