Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0016190

Physical Location & Seq

Genomic Coordinates Reverse (-)

176199 .. 176570

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCTGCTGTGTATTGCATTCATGGTGCTAGTGCAGAGTTCAATTTTCCAGAAAATAAAAGGCCAGTGCCCCCCTACAAGTTCTGCAGTTCACGTGAAGATGAAGGATATCCAGGCTATTGCAACATATTTTTCTTCAGCTGATGTATCAGTCTCTACTCTTGTGTCGTCTACGATGATAACACAGGTACCGTCAGATAAACCAGCTTCTCCAAATTTACTGATTTCTACTGGTATGGCAACTGATTATGAGGTGGATTGTGGTTCATTCGCCCCTAGCTGTGCTACTGGAGCAGCTGTTACTTCACCAGAGAACTTACAACTGGATGATTTCCTCATGCTAGACACAGGTTGGATAGCTGAGTTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

124

Amino Acids

13.11

Weight (kDa)

4.26

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31060
fragaria_vesca	FvH4_5g34550
malus_domestica	MD04G1001700.v1.1
prunus_persica	Prupe.1G001700_v2.0.a1
pyrus_communis	pycom04g00230
rosa_chinensis	RchiOBHm_Chr7g0235201
rosa_laevigata	RLG00000001173
rosa_multiflora	Rmu_sc0003211.1_g000026 Rmu_sc0004657.1_g000024
rosa_roxburghii	Rroxscaffold_3G00226180
rosa_rugosa	Rorug07G0289100
rosa_samantha	Rh7AG443600 Rh7CG464800 Rh7DG433100
rosa_wichuraiana	Rw7G036880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	187
AccI	GTMKAC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	1 cut(s)	120
AcvI	CACGTG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	42
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	5 cut(s)	140, 206, 279, 296, 359
AluI	AGCT	5 cut(s)	140, 206, 279, 296, 359
Alw26I	GTCTC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	4, 293
ApoI	RAATTY	1 cut(s)	214
Asp718I	GGTACC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	71
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BanI	GGYRCC	1 cut(s)	187
BbrPI	CACGTG	1 cut(s)	94
BbvI	GCAGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	3 cut(s)	29, 276, 341
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	5, 294
BlsI	GCNGC	2 cut(s)	6, 295
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bse1I	ACTGG	4 cut(s)	64, 235, 292, 327
BseBI	CCWGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	331
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	4 cut(s)	64, 235, 292, 327
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	53
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	64, 235, 292, 327
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	2 cut(s)	22, 337
CviJI	RGCY	7 cut(s)	63, 116, 140, 206, 279, 296, 359
CviKI_1	RGCY	7 cut(s)	63, 116, 140, 206, 279, 296, 359
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	120
Eco72I	CACGTG	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	109
FaeI	CATG	2 cut(s)	25, 340
FaiI	YATR	5 cut(s)	23, 127, 236, 249, 338
FatI	CATG	2 cut(s)	21, 336
FblI	GTMKAC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	5, 294
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	2 cut(s)	5, 294
FspBI	CTAG	3 cut(s)	29, 276, 341
GluI	GCNGC	2 cut(s)	5, 294
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	25, 340
HphI	GGTGA	1 cut(s)	297
Hpy166II	GTNNAC	2 cut(s)	91, 171
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	2 cut(s)	91, 171
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	17, 34, 86, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	25, 340
KpnI	GGTACC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	305
MaeI	CTAG	3 cut(s)	29, 276, 341
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	109, 126
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	2 cut(s)	42, 214
MmeI	TCCRAC	1 cut(s)	332
MnlI	CCTC	2 cut(s)	244, 344
MspA1I	CMGCKG	2 cut(s)	140, 296
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	25, 340
NlaIV	GGNNCC	1 cut(s)	189
PctI	GAATGC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	6, 295
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	111
PspCI	CACGTG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	189
PstI	CTGCAG	1 cut(s)	88
PvuII	CAGCTG	2 cut(s)	140, 296
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SatI	GCNGC	2 cut(s)	5, 294
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	96, 142, 189, 208, 255, 281, 298, 352, 361
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	2 cut(s)	42, 214
SspMI	CTAG	3 cut(s)	29, 276, 341
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	96
TasI	AATT	2 cut(s)	42, 214
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	2 cut(s)	4, 293
TspDTI	ATGAA	3 cut(s)	10, 116, 255
TspRI	CASTG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	3 cut(s)	29, 276, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.