AT4G31270
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013075
Physical Location & Seq
Reverse (-)
15183188 .. 15184961
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31270.1

Sequence Viewer

Length: 885 bp
ATGGAGGAAGGAACTTCAGGTTCACGGAGAACACGGTCTCAAGTTGCTCCAGAATGGGCAGTCAAAGATTGTCTAGTCCTCGTGAATGAGATCGCTGCGGTTGAAGCCGATTGTTCGAATGCTTTATCTAGCTTCCAGAAATGGACAATGATCACAGAGAACTGCAACGCTTTGGATGTTAGCAGAAATCTAAACCAATGCAGGAGGAAATGGGATTCTTTGATGTCTGATTACAATCAGATCAAGAAGTGGGAATCTCAGTACCGAGGCACTGGTCGTTCCTATTGGTCCCTGAGTAGTGACAAGAGGAAGTTACTTAATCTCCCGGGGGATATCGATATCGAGCTTTTTGAAGCCATCAATGCGGTTGTGATGATCCAAGATGAAAAAGCTGGGACTGAATCTGATAGTGACCCTGAAGCGCAAGACGTTGTTGATCTCTCTGCTGAATTAGCTTTTGTAGGATCAAAAAGATCAAGACAGCGAACAATGGTCATGAAGGAGACAAAGAAAGAAGAGCCACGGACTAGCCGAGTTCAAGTAAACACTCGAGAGAAACCTATAACTACAAAAGCAACCCATCAGAACAAAACCATGGGAGAGAAGAAGCCGGTGGAAGATATGTCCACAGATGAAGAAGAAGATGAAACAATGAACATAGAAGAGGATGTAGAAGTGATGGAAGCGAAGCTAAGTTATAAAATTGACTTGATACATGCGATAGTCGGGAGAAATCTAGCAAAGGATAATGAAACAAAGGATGGTGTTAGTATGGACGACAAGTTGAAGTCTGTGAGACAGCAAGGAGACGAGCTCATCGGTTGTCTGAGTGAAATTGTTAGTACCCTTAATAGGCTTCATGAAGTTCCACAAGAAATCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

294

Amino Acids

33.37

Weight (kDa)

4.88

Isoelectric Point (pI)

50.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 18 - 89 8.1e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
AciI CCGC 2 cut(s) 98, 365
AclWI GGATC 2 cut(s) 370, 472
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 2 cut(s) 263, 844
AfiI CCNNNNNNNGG 1 cut(s) 852
AgsI TTSAA 4 cut(s) 104, 353, 539, 787
AluBI AGCT 6 cut(s) 132, 346, 392, 455, 691, 814
AluI AGCT 6 cut(s) 132, 346, 392, 455, 691, 814
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 4 cut(s) 42, 497, 790, 801
AlwI GGATC 2 cut(s) 370, 472
Ama87I CYCGRG 2 cut(s) 325, 549
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 288
AsuC2I CCSGG 2 cut(s) 326, 327
AsuII TTCGAA 1 cut(s) 116
AvaI CYCGRG 2 cut(s) 325, 549
AvaII GGWCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 816
BauI CACGAG 1 cut(s) 80
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 1 cut(s) 82
BccI CCATC 4 cut(s) 365, 588, 673, 755
BclI TGATCA 1 cut(s) 150
BcnI CCSGG 2 cut(s) 326, 327
BcoDI GTCTC 4 cut(s) 42, 497, 790, 801
BfaI CTAG 4 cut(s) 74, 129, 528, 737
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 326, 327
Bme18I GGWCC 1 cut(s) 288
BmeT110I CYCGRG 2 cut(s) 325, 549
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 2 cut(s) 326, 327
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 24
BpuMI CCSGG 2 cut(s) 326, 327
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 234
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 5 cut(s) 265, 325, 326, 521, 594
BsaXI ACNNNNNCTCC 2 cut(s) 306, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 852
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 5 cut(s) 265, 325, 326, 521, 594
BseGI GGATG 3 cut(s) 181, 673, 766
BseJI GATNNNNATC 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 852
BseMII CTCAG 3 cut(s) 272, 284, 818
BseNI ACTGG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 2 cut(s) 325, 549
BsiSI CCGG 2 cut(s) 326, 611
BslFI GGGAC 2 cut(s) 274, 409
BslI CCNNNNNNNGG 1 cut(s) 852
BsmAI GTCTC 4 cut(s) 42, 497, 790, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 2 cut(s) 274, 409
BsmI GAATGC 1 cut(s) 124
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 2 cut(s) 325, 549
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 816
Bsp143I GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 2 cut(s) 98, 365
BspCNI CTCAG 3 cut(s) 271, 285, 819
BspDI ATCGAT 1 cut(s) 336
BspHI TCATGA 2 cut(s) 495, 859
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 2 cut(s) 370, 472
BspQI GCTCTTC 1 cut(s) 510
BspT104I TTCGAA 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 1 cut(s) 277
BssAI RCCGGY 1 cut(s) 610
BssECI CCNNGG 5 cut(s) 265, 325, 326, 521, 594
BssMI GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
BssSI CACGAG 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 80
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 2 cut(s) 510, 657
BstBI TTCGAA 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 258, 293, 692, 827
BstDSI CCRYGG 2 cut(s) 521, 594
BstF5I GGATG 3 cut(s) 181, 673, 766
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 7 cut(s) 93, 153, 243, 378, 439, 467, 476
BstMAI GTCTC 4 cut(s) 42, 497, 790, 801
BstMBI GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
BstMWI GCNNNNNNNGC 3 cut(s) 104, 362, 452
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 2 cut(s) 324, 325
BstV1I GCAGC 1 cut(s) 82
Bsu15I ATCGAT 1 cut(s) 336
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 2 cut(s) 521, 594
BtsCI GGATG 3 cut(s) 181, 673, 766
BtsIMutI CAGTG 1 cut(s) 270
CciI TCATGA 2 cut(s) 495, 859
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 288
Cfr9I CCCGGG 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 2 cut(s) 262, 843
CviAII CATG 4 cut(s) 496, 595, 716, 860
CviQI GTAC 2 cut(s) 262, 843
DdeI CTNAG 4 cut(s) 258, 293, 692, 827
DpnI GATC 7 cut(s) 92, 152, 242, 377, 438, 466, 475
DpnII GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
Eam1104I CTCTTC 2 cut(s) 510, 657
EarI CTCTTC 2 cut(s) 510, 657
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 594
Eco24I GRGCYC 1 cut(s) 816
Eco31I GGTCTC 1 cut(s) 42
Eco32I GATATC 2 cut(s) 334, 340
Eco47I GGWCC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 2 cut(s) 325, 549
EcoICRI GAGCTC 1 cut(s) 814
EcoRV GATATC 2 cut(s) 334, 340
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 816
ErhI CCWWGG 1 cut(s) 594
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 4 cut(s) 499, 598, 719, 863
FaiI YATR 9 cut(s) 497, 563, 596, 623, 659, 699, 717, 773, 861
FaqI GGGAC 2 cut(s) 274, 409
FatI CATG 4 cut(s) 495, 594, 715, 859
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 3 cut(s) 188, 680, 773
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 4 cut(s) 74, 129, 528, 737
GlaI GCGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 396
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 2 cut(s) 326, 611
HhaI GCGC 1 cut(s) 424
Hin1II CATG 4 cut(s) 499, 598, 719, 863
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 3 cut(s) 215, 254, 401
HpaII CCGG 2 cut(s) 326, 611
Hpy166II GTNNAC 3 cut(s) 23, 544, 627
Hpy188I TCNGA 5 cut(s) 229, 240, 406, 585, 828
Hpy188III TCNNGA 9 cut(s) 50, 82, 136, 244, 477, 496, 551, 727, 860
Hpy8I GTNNAC 3 cut(s) 23, 544, 627
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 2 cut(s) 165, 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 362, 452
HpyF3I CTNAG 4 cut(s) 258, 293, 692, 827
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 4 cut(s) 499, 598, 719, 863
HspAI GCGC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 1 cut(s) 52
Lsp1109I GCAGC 1 cut(s) 82
MaeI CTAG 4 cut(s) 74, 129, 528, 737
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 299, 312, 410
MalI GATC 7 cut(s) 92, 152, 242, 377, 438, 466, 475
MboI GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
MboII GAAGA 7 cut(s) 527, 616, 629, 647, 650, 653, 674
MhlI GDGCHC 1 cut(s) 816
MluCI AATT 3 cut(s) 449, 702, 834
MnlI CCTC 5 cut(s) 89, 198, 260, 300, 658
MseI TTAA 2 cut(s) 318, 849
MspI CCGG 2 cut(s) 326, 611
MspR9I CCNGG 2 cut(s) 326, 327
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 104, 362, 452
NciI CCSGG 2 cut(s) 326, 327
NcoI CCATGG 1 cut(s) 594
NdeII GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
NlaIII CATG 4 cut(s) 499, 598, 719, 863
NlaIV GGNNCC 1 cut(s) 290
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 2 cut(s) 299, 410
NspI RCATGY 1 cut(s) 719
NspV TTCGAA 1 cut(s) 116
PaeR7I CTCGAG 1 cut(s) 549
PagI TCATGA 2 cut(s) 495, 859
PciSI GCTCTTC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 529
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 3 cut(s) 215, 254, 401
PkrI GCNGC 1 cut(s) 97
PsiI TTATAA 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 816
PspFI CCCAGC 1 cut(s) 392
PspN4I GGNNCC 1 cut(s) 290
PspPI GGNCC 1 cut(s) 288
RsaI GTAC 2 cut(s) 263, 844
RsaNI GTAC 2 cut(s) 262, 843
SacI GAGCTC 1 cut(s) 816
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 318, 849
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 7 cut(s) 90, 150, 240, 375, 436, 464, 473
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 2 cut(s) 326, 327
SduI GDGCHC 1 cut(s) 816
SetI ASST 9 cut(s) 22, 134, 348, 394, 432, 457, 562, 693, 816
Sfr274I CTCGAG 1 cut(s) 549
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 1 cut(s) 288
SlaI CTCGAG 1 cut(s) 549
SmaI CCCGGG 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 39, 549
SmoI CTYRAG 2 cut(s) 39, 549
Sse9I AATT 3 cut(s) 449, 702, 834
SsiI CCGC 2 cut(s) 98, 365
SspMI CTAG 4 cut(s) 74, 129, 528, 737
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 2 cut(s) 324, 325
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 36
TaiI ACGT 1 cut(s) 432
TaqI TCGA 5 cut(s) 116, 336, 342, 550, 879
TasI AATT 3 cut(s) 449, 702, 834
TfiI GAWTC 3 cut(s) 215, 254, 401
Tru1I TTAA 2 cut(s) 318, 849
Tru9I TTAA 2 cut(s) 318, 849
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 2 cut(s) 299, 410
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 2 cut(s) 299, 410
TspDTI ATGAA 8 cut(s) 399, 512, 648, 660, 668, 765, 848, 876
TspGWI ACGGA 2 cut(s) 40, 538
TspMI CCCGGG 1 cut(s) 325
TspRI CASTG 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 288
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 549
XmaI CCCGGG 1 cut(s) 325
XspI CTAG 4 cut(s) 74, 129, 528, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.