Rw6G039350
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013075
Physical Location & Seq
Reverse (-)
63363931 .. 63366110
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039350.1

Sequence Viewer

Length: 1056 bp
ATGAAAGGAGAGCAAACCCTACCGGAGTTTCACCACTCAAATGGCGGCGGCTCCGGCAGCCGGCGAACTCGTTCTCAGGTAGCACCGGACTGGACCGAAACGGATTTACTCATCCTGGTGAACGAGGTCACCGCCGTCGAAGCCGATTGCCGGAAAGAGTTCTCGTCCTTCCAGAAATGGAAGATCGTCGCGCAAAACTGCACCGCTCTGGGCGTGCCTCGGTCTCTGGACCAGTACCGCCGCAAGTGGGAGGCGCTGCTCCACGACTACAAGGTCATCGACCACTGGAATTCACAGTCGAGAGCTTCTGCTTCGTACTGGGCTCTGGAGAGTGATAGGAGGAAGCAGTTTGGGCTTCCGCAGAGTTTCGATCGTGAGCTTTTCAAAGCCATTGGCGGCTATGAGAAGGTGCAGGCGAATCAGTCGGATACGGAGGAAGGTGAGGCTGAGGCTGACGTGGCTGATGAATATGAAGAAGCTGTGGAACCAGGGAAGCCTGTAGAAAAGCCTCACCAAACCCATGCAGAAGAAAAGCATGTGGAAAGCTGCCTAGAAGCAATTCCTATGGAGAACTTGGCAGAAGAAAAGCCTCACCAAACCCATTCACAAGAAAAGCCTGTGGGAAGCTGCTTAGATGCTATTCCTACGAAGATGGCAGAAGAAGGGCCTCAGAAAAGCTGGGTGAAGAAAAAACATAAGGCCTCAGAAGAACAGCCTGGGGGAAGCTGCTTAGAAGTCATTCCTATGAAGAGCATGGCAGAAAAAAAGACTCTGAAAAGCAGTCTGAAGAGGAAGCAACAACGTACTCAAATGGAAGAGAAGATAACGGGCATTGAAGAACAGAAGCAAATCATGGCTATGAAGTTGCAGTGGAGTGCAGAACTCATCCGTGCTATTGTCACCGAGAATGCAGACCATGAGGCTGCTGATGAGAAGAGCATGAAGGACCTCCAAGCTGATTTAGTTAGGCGTCAAGGGGACCAGGTTATCGCATGCCTGGCAGATATTGTGAAGACTCTTAACCAGGTTCATCGTCTTGTCCAGGAACGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

351

Amino Acids

39.85

Weight (kDa)

5.82

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 30 - 104 1.6e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 206
AccII CGCG 1 cut(s) 191
AciI CCGC 8 cut(s) 45, 48, 132, 204, 238, 241, 359, 396
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 806
AcyI GRCGYC 1 cut(s) 970
AfaI GTAC 3 cut(s) 236, 317, 805
AfiI CCNNNNNNNGG 3 cut(s) 60, 150, 247
AgsI TTSAA 2 cut(s) 385, 836
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 7 cut(s) 114, 487, 715, 981, 996, 1023, 1041
AluBI AGCT 8 cut(s) 305, 379, 479, 546, 627, 678, 726, 956
AluI AGCT 8 cut(s) 305, 379, 479, 546, 627, 678, 726, 956
Alw26I GTCTC 1 cut(s) 228
AoxI GGCC 2 cut(s) 665, 699
ApeKI GCWGC 6 cut(s) 57, 256, 546, 627, 726, 923
ApoI RAATTY 1 cut(s) 289
Asp700I GAANNNNTTC 4 cut(s) 70, 158, 558, 738
AspLEI GCGC 2 cut(s) 193, 256
AspS9I GGNCC 5 cut(s) 93, 229, 665, 946, 979
AsuHPI GGTGA 8 cut(s) 23, 121, 130, 452, 503, 584, 694, 892
AvaII GGWCC 4 cut(s) 93, 229, 946, 979
BanII GRGCYC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 1019
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 6 cut(s) 69, 243, 533, 614, 713, 910
BccI CCATC 1 cut(s) 646
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 498
BfoI RGCGCY 1 cut(s) 257
BfuI GTATCC 1 cut(s) 421
Bme1390I CCNGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
Bme18I GGWCC 4 cut(s) 93, 229, 946, 979
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 5 cut(s) 93, 229, 665, 946, 979
BmiI GGNNCC 3 cut(s) 52, 486, 980
BmrFI CCNGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 1019
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 970
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 218, 488, 716
BsaWI WCCGGW 2 cut(s) 22, 85
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 150, 247
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 4 cut(s) 95, 232, 290, 323
BseBI CCWGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
BseDI CCNNGG 3 cut(s) 218, 488, 716
BseGI GGATG 2 cut(s) 111, 885
BseLI CCNNNNNNNGG 3 cut(s) 60, 150, 247
BseMII CTCAG 4 cut(s) 89, 438, 683, 717
BseNI ACTGG 4 cut(s) 95, 232, 290, 323
BseXI GCAGC 6 cut(s) 69, 243, 533, 614, 713, 910
BseYI CCCAGC 1 cut(s) 678
BsgI GTGCAG 3 cut(s) 184, 431, 897
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 2 cut(s) 667, 701
BsiEI CGRYCG 1 cut(s) 373
BsiSI CCGG 5 cut(s) 23, 54, 61, 86, 151
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 3 cut(s) 60, 150, 247
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 992
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 2 cut(s) 667, 701
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 2 cut(s) 183, 370
BspACI CCGC 8 cut(s) 45, 48, 132, 204, 238, 241, 359, 396
BspANI GGCC 2 cut(s) 667, 701
BspCNI CTCAG 4 cut(s) 88, 439, 682, 716
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 3 cut(s) 52, 486, 980
BspQI GCTCTTC 2 cut(s) 743, 929
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 4 cut(s) 95, 232, 290, 323
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 218, 488, 716
BssMI GATC 2 cut(s) 183, 370
BssNI GRCGYC 1 cut(s) 970
Bst2UI CCWGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 4 cut(s) 743, 782, 810, 929
BstACI GRCGYC 1 cut(s) 970
BstC8I GCNNGC 4 cut(s) 62, 215, 414, 994
BstDEI CTNAG 6 cut(s) 75, 447, 631, 669, 703, 730
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 111, 885
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 193, 256
BstKTI GATC 2 cut(s) 186, 373
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 183, 370
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 6 cut(s) 54, 57, 140, 352, 458, 998
BstNI CCWGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
BstNSI RCATGY 2 cut(s) 539, 996
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 7 cut(s) 114, 487, 715, 981, 996, 1023, 1041
BstSFI CTRYAG 1 cut(s) 498
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 6 cut(s) 69, 243, 533, 614, 713, 910
BstV2I GAAGAC 1 cut(s) 1019
BstXI CCANNNNNNTGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 667, 701
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 111, 885
BtsI GCAGTG 1 cut(s) 875
BtsIMutI CAGTG 2 cut(s) 283, 875
Cac8I GCNNGC 4 cut(s) 62, 215, 414, 994
CfoI GCGC 2 cut(s) 193, 256
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 5 cut(s) 93, 229, 665, 946, 979
CseI GACGC 1 cut(s) 959
CsiI ACCWGGT 2 cut(s) 981, 1023
Csp6I GTAC 3 cut(s) 235, 316, 804
CviAII CATG 7 cut(s) 521, 536, 754, 853, 917, 940, 993
CviQI GTAC 3 cut(s) 235, 316, 804
DdeI CTNAG 6 cut(s) 75, 447, 631, 669, 703, 730
DpnI GATC 2 cut(s) 185, 372
DpnII GATC 2 cut(s) 183, 370
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 4 cut(s) 743, 782, 810, 929
EarI CTCTTC 4 cut(s) 743, 782, 810, 929
Eco147I AGGCCT 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 4 cut(s) 93, 229, 946, 979
Eco57I CTGAAG 1 cut(s) 806
Eco91I GGTNACC 1 cut(s) 127
EcoO109I RGGNCCY 2 cut(s) 665, 946
EcoO65I GGTNACC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 7 cut(s) 114, 487, 715, 981, 996, 1023, 1041
EcoT38I GRGCYC 1 cut(s) 325
FaeI CATG 7 cut(s) 524, 539, 757, 856, 920, 943, 996
FaqI GGGAC 1 cut(s) 992
FatI CATG 7 cut(s) 520, 535, 753, 852, 916, 939, 992
FokI GGATG 2 cut(s) 98, 872
FriOI GRGCYC 1 cut(s) 325
FspBI CTAG 1 cut(s) 551
GlaI GCGC 2 cut(s) 192, 255
GsaI CCCAGC 1 cut(s) 682
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 2 cut(s) 667, 701
HapII CCGG 5 cut(s) 23, 54, 61, 86, 151
HgaI GACGC 1 cut(s) 959
HhaI GCGC 2 cut(s) 193, 256
Hin1I GRCGYC 1 cut(s) 970
Hin1II CATG 7 cut(s) 524, 539, 757, 856, 920, 943, 996
Hin6I GCGC 2 cut(s) 191, 254
HinP1I GCGC 2 cut(s) 191, 254
HinfI GANTC 3 cut(s) 418, 769, 1015
HpaII CCGG 5 cut(s) 23, 54, 61, 86, 151
HphI GGTGA 8 cut(s) 23, 121, 130, 452, 503, 584, 694, 892
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 5 cut(s) 427, 672, 706, 774, 786
Hpy188III TCNNGA 5 cut(s) 172, 227, 300, 326, 374
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 140, 191
HpyAV CCTTC 5 cut(s) 178, 400, 431, 656, 937
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 3 cut(s) 456, 802, 1048
HpyCH4V TGCA 6 cut(s) 201, 412, 524, 868, 878, 911
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 57, 140, 352, 458, 998
HpyF3I CTNAG 6 cut(s) 75, 447, 631, 669, 703, 730
HpySE526I ACGT 3 cut(s) 456, 802, 1048
Hsp92I GRCGYC 1 cut(s) 970
Hsp92II CATG 7 cut(s) 524, 539, 757, 856, 920, 943, 996
HspAI GCGC 2 cut(s) 191, 254
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 183, 370
LguI GCTCTTC 2 cut(s) 743, 929
LmnI GCTCC 2 cut(s) 56, 264
Lsp1109I GCAGC 6 cut(s) 69, 243, 533, 614, 713, 910
LweI GCATC 1 cut(s) 625
MabI ACCWGGT 2 cut(s) 981, 1023
MaeI CTAG 1 cut(s) 551
MaeII ACGT 3 cut(s) 456, 802, 1048
MaeIII GTNAC 2 cut(s) 127, 898
MalI GATC 2 cut(s) 185, 372
MbiI CCGCTC 1 cut(s) 206
MboI GATC 2 cut(s) 183, 370
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 2 cut(s) 289, 558
MlyI GAGTC 2 cut(s) 763, 1009
MmeI TCCRAC 1 cut(s) 405
MroNI GCCGGC 1 cut(s) 60
MroXI GAANNNNTTC 4 cut(s) 70, 158, 558, 738
MseI TTAA 1 cut(s) 1020
MslI CAYNNNNRTG 4 cut(s) 39, 116, 743, 857
MspI CCGG 5 cut(s) 23, 54, 61, 86, 151
MspR9I CCNGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 6 cut(s) 54, 57, 140, 352, 458, 998
NaeI GCCGGC 1 cut(s) 62
NdeII GATC 2 cut(s) 183, 370
NgoMIV GCCGGC 1 cut(s) 60
NlaIII CATG 7 cut(s) 524, 539, 757, 856, 920, 943, 996
NlaIV GGNNCC 3 cut(s) 52, 486, 980
NmuCI GTSAC 2 cut(s) 127, 898
NspI RCATGY 2 cut(s) 539, 996
PaeI GCATGC 1 cut(s) 996
PceI AGGCCT 1 cut(s) 701
PciSI GCTCTTC 2 cut(s) 743, 929
PctI GAATGC 1 cut(s) 913
PdiI GCCGGC 1 cut(s) 62
PdmI GAANNNNTTC 4 cut(s) 70, 158, 558, 738
PfeI GAWTC 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 1041
Ple19I CGATCG 1 cut(s) 373
PleI GAGTC 2 cut(s) 763, 1009
PpsI GAGTC 2 cut(s) 763, 1009
PpuMI RGGWCCY 1 cut(s) 946
Psp5II RGGWCCY 1 cut(s) 946
Psp6I CCWGG 7 cut(s) 114, 487, 715, 981, 996, 1023, 1041
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 7 cut(s) 114, 487, 715, 981, 996, 1023, 1041
PspN4I GGNNCC 3 cut(s) 52, 486, 980
PspPI GGNCC 5 cut(s) 93, 229, 665, 946, 979
PspPPI RGGWCCY 1 cut(s) 946
PvuI CGATCG 1 cut(s) 373
RsaI GTAC 3 cut(s) 236, 317, 805
RsaNI GTAC 3 cut(s) 235, 316, 804
RseI CAYNNNNRTG 4 cut(s) 39, 116, 743, 857
SapI GCTCTTC 2 cut(s) 743, 929
SaqAI TTAA 1 cut(s) 1020
Sau3AI GATC 2 cut(s) 183, 370
Sau96I GGNCC 5 cut(s) 93, 229, 665, 946, 979
SchI GAGTC 2 cut(s) 763, 1009
ScrFI CCNGG 7 cut(s) 116, 489, 717, 983, 998, 1025, 1043
SduI GDGCHC 1 cut(s) 325
SexAI ACCWGGT 2 cut(s) 981, 1023
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 1 cut(s) 498
SinI GGWCC 4 cut(s) 93, 229, 946, 979
SmiMI CAYNNNNRTG 4 cut(s) 39, 116, 743, 857
SphI GCATGC 1 cut(s) 996
Sse9I AATT 2 cut(s) 289, 558
SseBI AGGCCT 1 cut(s) 701
SsiI CCGC 8 cut(s) 45, 48, 132, 204, 238, 241, 359, 396
SspMI CTAG 1 cut(s) 551
StuI AGGCCT 1 cut(s) 701
StyD4I CCNGG 7 cut(s) 114, 487, 715, 981, 996, 1023, 1041
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 3 cut(s) 459, 805, 1051
TaqI TCGA 4 cut(s) 138, 279, 299, 369
TaqII GACCGA 2 cut(s) 110, 210
TasI AATT 2 cut(s) 289, 558
TauI GCSGC 4 cut(s) 48, 51, 243, 399
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 1 cut(s) 1020
Tru9I TTAA 1 cut(s) 1020
TscAI CASTG 2 cut(s) 290, 875
TseFI GTSAC 2 cut(s) 127, 898
TseI GCWGC 6 cut(s) 57, 256, 546, 627, 726, 923
Tsp45I GTSAC 2 cut(s) 127, 898
TspDTI ATGAA 7 cut(s) 17, 480, 486, 761, 875, 956, 1019
TspGWI ACGGA 3 cut(s) 116, 446, 878
TspRI CASTG 2 cut(s) 290, 875
VpaK11BI GGWCC 4 cut(s) 93, 229, 946, 979
XapI RAATTY 1 cut(s) 289
XceI RCATGY 2 cut(s) 539, 996
XmnI GAANNNNTTC 4 cut(s) 70, 158, 558, 738
XspI CTAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.