MD08G1124900.v1.1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013075
Physical Location & Seq
Forward (+)
11699559 .. 11701792
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1124900.v1.1.491

Sequence Viewer

Length: 975 bp
ATGAAACCCGAACAAACCCCGTCCCAGCTCGACCGATCTCACCGTTCTGCCGGCAACCGGTGCAGCACGCGTTCCCAAGTAGCCCCGGACTGGAATCCGACGGACGAGCTCATCCTCGTGAACGAGGTCGCCGCAGTCGAGGCCGACTGTCTGAAAGCGCTGTCGTCGTTTCAGAAATGGAAGATCATAGCTCAGAACTGCTTTACCCTGGGCGTGTCGCGGACATTGGACCAGTATCGCCGGAAGTGGGACGCTTTGTTCGGCGAGTACAAGGGGATCAAGCAGTGGGAGGCGAAGTGCCGAGCTTCGGATTCGTACTGGGTTTTGGGAATTGAGAGGAGGAAGCGGAATGGGTTGCCGGAGAATTTTGATCAGGAGCTGTTTAGTGGGATTGATAAGCTTGTAAGGGTGAGGGGAAACCAATCGGATACGGACCCGGATAGTGATCCCGAAGACGAGGCGGAGGCTGAGCCGGAGGAACTTGATTCCGAGCCAGAGTCCAAGAGGAGAAAGCGTCGATCAATACCTCAGAAAAGCTGTCCTAAAGAAAATTCATTTAGAAGCTGCAAGAGAGAAAAGCCTCGCGAAACTCATGCTCAAGAAAAACCTCAAGAAACCCATGCAGAAGAAAAACCTGTGGGAAGCGGCTTAAAAGCAATTCCTACGAAGAGCCTGGCAGAAGAACGGCCTCAGAAGAGCTGTGTGAAGAAAAAACTTACAAATAGTCAAAGAAAAGAGGAGGCAATCAGCATTGAAGAACAAGAGAAAACTGCAGCTATGAAATTGCATGAAAGTGCAGAACTAATCCGTGCTATCGTTACTGAGAAACCTGACCATGAGGCTGCTGGCGTGAAGAGCACCGGGGACCTCCAAACTGATTTTGTTAGGTGCCAAGGGGACCGGGTCATTGCATGCCTTGGCGATATTGTGAAGACTCTCGACCAGCTCCATCATCTTGTCCAGGAATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

325

Amino Acids

36.84

Weight (kDa)

6.25

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 888
AccII CGCG 3 cut(s) 70, 220, 585
AciI CCGC 5 cut(s) 132, 220, 346, 461, 645
AclWI GGATC 2 cut(s) 284, 440
AcsI RAATTY 2 cut(s) 364, 550
AfaI GTAC 2 cut(s) 269, 317
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
AflIII ACRYGT 1 cut(s) 68
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 1 cut(s) 755
AjnI CCWGG 3 cut(s) 207, 672, 960
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
Alw21I GWGCWC 2 cut(s) 111, 860
AlwI GGATC 2 cut(s) 284, 440
AlwNI CAGNNNCTG 1 cut(s) 379
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 2 cut(s) 141, 686
ApeKI GCWGC 4 cut(s) 63, 564, 773, 842
ApoI RAATTY 2 cut(s) 364, 550
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AsiGI ACCGGT 1 cut(s) 57
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 4 cut(s) 229, 433, 865, 898
AsuC2I CCSGG 4 cut(s) 86, 437, 862, 902
AsuHPI GGTGA 2 cut(s) 32, 421
AvaII GGWCC 4 cut(s) 229, 433, 865, 898
BanI GGYRCC 1 cut(s) 888
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 2 cut(s) 459, 938
Bbv12I GWGCWC 2 cut(s) 111, 860
BbvI GCAGC 4 cut(s) 75, 551, 785, 829
BccI CCATC 1 cut(s) 957
BceAI ACGGC 1 cut(s) 701
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 3 cut(s) 209, 674, 962
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 4 cut(s) 86, 437, 862, 902
BfmI CTRYAG 1 cut(s) 771
BfoI RGCGCY 1 cut(s) 161
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 6 cut(s) 64, 132, 565, 646, 774, 843
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 6 cut(s) 65, 133, 566, 647, 775, 844
Bme1390I CCNGG 7 cut(s) 86, 209, 437, 674, 862, 902, 962
Bme18I GGWCC 4 cut(s) 229, 433, 865, 898
BmgT120I GGNCC 4 cut(s) 229, 433, 865, 898
BmiI GGNNCC 4 cut(s) 435, 866, 890, 899
BmrFI CCNGG 7 cut(s) 86, 209, 437, 674, 862, 902, 962
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 459, 938
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 582, 594
BpuMI CCSGG 4 cut(s) 86, 437, 862, 902
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 6 cut(s) 84, 207, 208, 861, 892, 916
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 499, 529
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
Bse118I RCCGGY 2 cut(s) 50, 57
Bse1I ACTGG 3 cut(s) 95, 232, 323
Bse3DI GCAATG 1 cut(s) 906
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 3 cut(s) 209, 674, 962
BseDI CCNNGG 6 cut(s) 84, 207, 208, 861, 892, 916
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 5 cut(s) 206, 459, 542, 704, 813
BseNI ACTGG 3 cut(s) 95, 232, 323
BseRI GAGGAG 3 cut(s) 352, 520, 752
BseXI GCAGC 4 cut(s) 75, 551, 785, 829
BseYI CCCAGC 1 cut(s) 24
BsgI GTGCAG 2 cut(s) 82, 816
Bsh1236I CGCG 3 cut(s) 70, 220, 585
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 143, 688
BshNI GGYRCC 1 cut(s) 888
BshTI ACCGGT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 111, 860
BsiSI CCGG 9 cut(s) 51, 58, 86, 241, 359, 437, 473, 861, 901
BslFI GGGAC 4 cut(s) 7, 263, 878, 911
BslI CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
BsmFI GGGAC 4 cut(s) 7, 263, 878, 911
BsnI GGCC 2 cut(s) 143, 688
Bsp1286I GDGCHC 2 cut(s) 111, 860
Bsp143I GATC 6 cut(s) 35, 183, 276, 370, 445, 518
Bsp1720I GCTNAGC 1 cut(s) 468
Bsp68I TCGCGA 1 cut(s) 585
BspACI CCGC 5 cut(s) 132, 220, 346, 461, 645
BspANI GGCC 2 cut(s) 143, 688
BspCNI CTCAG 5 cut(s) 205, 460, 541, 703, 814
BspFNI CGCG 3 cut(s) 70, 220, 585
BspLI GGNNCC 4 cut(s) 435, 866, 890, 899
BspMAI CTGCAG 1 cut(s) 775
BspPI GGATC 2 cut(s) 284, 440
BspQI GCTCTTC 3 cut(s) 662, 689, 848
BspT107I GGYRCC 1 cut(s) 888
BsrDI GCAATG 1 cut(s) 906
BsrFI RCCGGY 2 cut(s) 50, 57
BsrI ACTGG 3 cut(s) 95, 232, 323
BssAI RCCGGY 2 cut(s) 50, 57
BssECI CCNNGG 6 cut(s) 84, 207, 208, 861, 892, 916
BssMI GATC 6 cut(s) 35, 183, 276, 370, 445, 518
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 2 cut(s) 892, 916
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 3 cut(s) 209, 674, 962
Bst4CI ACNGT 2 cut(s) 44, 149
Bst6I CTCTTC 3 cut(s) 662, 689, 848
BstAPI GCANNNNNTGC 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 52, 68, 847, 913
BstDEI CTNAG 5 cut(s) 192, 468, 528, 690, 822
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 3 cut(s) 70, 220, 585
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 6 cut(s) 38, 186, 279, 373, 448, 521
BstMBI GATC 6 cut(s) 35, 183, 276, 370, 445, 518
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 60, 140, 855
BstNI CCWGG 3 cut(s) 209, 674, 962
BstNSI RCATGY 1 cut(s) 915
BstSCI CCNGG 7 cut(s) 84, 207, 435, 672, 860, 900, 960
BstSFI CTRYAG 1 cut(s) 771
BstUI CGCG 3 cut(s) 70, 220, 585
BstV1I GCAGC 4 cut(s) 75, 551, 785, 829
BstV2I GAAGAC 2 cut(s) 459, 938
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 143, 688
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
BtuMI TCGCGA 1 cut(s) 585
Cac8I GCNNGC 4 cut(s) 52, 68, 847, 913
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 2 cut(s) 50, 57
Cfr13I GGNCC 4 cut(s) 229, 433, 865, 898
CseI GACGC 2 cut(s) 260, 503
Csp6I GTAC 2 cut(s) 268, 316
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 5 cut(s) 593, 620, 788, 836, 912
CviQI GTAC 2 cut(s) 268, 316
DdeI CTNAG 5 cut(s) 192, 468, 528, 690, 822
DpnI GATC 6 cut(s) 37, 185, 278, 372, 447, 520
DpnII GATC 6 cut(s) 35, 183, 276, 370, 445, 518
Eam1104I CTCTTC 3 cut(s) 662, 689, 848
EarI CTCTTC 3 cut(s) 662, 689, 848
EciI GGCGGA 1 cut(s) 476
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 892, 916
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 4 cut(s) 229, 433, 865, 898
Eco47III AGCGCT 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 865
EcoRII CCWGG 3 cut(s) 207, 672, 960
EcoT14I CCWWGG 2 cut(s) 892, 916
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 2 cut(s) 892, 916
FaeI CATG 5 cut(s) 596, 623, 791, 839, 915
FaiI YATR 7 cut(s) 188, 594, 621, 779, 789, 837, 913
FaqI GGGAC 4 cut(s) 7, 263, 878, 911
FatI CATG 5 cut(s) 592, 619, 787, 835, 911
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 64, 132, 565, 646, 774, 843
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 6 cut(s) 64, 132, 565, 646, 774, 843
GlaI GCGC 1 cut(s) 159
GluI GCNGC 6 cut(s) 64, 132, 565, 646, 774, 843
GsaI CCCAGC 1 cut(s) 28
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 2 cut(s) 143, 688
HapII CCGG 9 cut(s) 51, 58, 86, 241, 359, 437, 473, 861, 901
HgaI GACGC 2 cut(s) 260, 503
HhaI GCGC 1 cut(s) 160
Hin1II CATG 5 cut(s) 596, 623, 791, 839, 915
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 94, 311, 485, 497, 934
HpaII CCGG 9 cut(s) 51, 58, 86, 241, 359, 437, 473, 861, 901
HphI GGTGA 2 cut(s) 32, 421
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 9 cut(s) 99, 153, 174, 195, 310, 427, 490, 531, 693
Hpy188III TCNNGA 7 cut(s) 118, 374, 449, 584, 599, 611, 938
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 3 cut(s) 103, 169, 519
HpyCH4III ACNGT 2 cut(s) 44, 149
HpyCH4V TGCA 7 cut(s) 63, 567, 623, 773, 787, 797, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 140, 855
HpyF3I CTNAG 5 cut(s) 192, 468, 528, 690, 822
Hsp92II CATG 5 cut(s) 596, 623, 791, 839, 915
HspAI GCGC 1 cut(s) 158
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 6 cut(s) 35, 183, 276, 370, 445, 518
LguI GCTCTTC 3 cut(s) 662, 689, 848
LmnI GCTCC 2 cut(s) 376, 951
Lsp1109I GCAGC 4 cut(s) 75, 551, 785, 829
MaeIII GTNAC 1 cut(s) 817
MalI GATC 6 cut(s) 37, 185, 278, 372, 447, 520
MboI GATC 6 cut(s) 35, 183, 276, 370, 445, 518
MhlI GDGCHC 2 cut(s) 111, 860
MluCI AATT 5 cut(s) 330, 364, 550, 657, 782
MluI ACGCGT 1 cut(s) 68
MlyI GAGTC 2 cut(s) 506, 928
MmeI TCCRAC 1 cut(s) 122
MroNI GCCGGC 1 cut(s) 50
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 2 cut(s) 116, 792
MspI CCGG 9 cut(s) 51, 58, 86, 241, 359, 437, 473, 861, 901
MspR9I CCNGG 7 cut(s) 86, 209, 437, 674, 862, 902, 962
MvaI CCWGG 3 cut(s) 209, 674, 962
MvnI CGCG 3 cut(s) 70, 220, 585
MwoI GCNNNNNNNGC 3 cut(s) 60, 140, 855
NaeI GCCGGC 1 cut(s) 52
NciI CCSGG 4 cut(s) 86, 437, 862, 902
NdeII GATC 6 cut(s) 35, 183, 276, 370, 445, 518
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 5 cut(s) 596, 623, 791, 839, 915
NlaIV GGNNCC 4 cut(s) 435, 866, 890, 899
NmeAIII GCCGAG 1 cut(s) 326
NruI TCGCGA 1 cut(s) 585
NspI RCATGY 1 cut(s) 915
PaeI GCATGC 1 cut(s) 915
PasI CCCWGGG 1 cut(s) 208
PciSI GCTCTTC 3 cut(s) 662, 689, 848
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 3 cut(s) 94, 311, 485
PflFI GACNNNGTC 1 cut(s) 902
PfoI TCCNGGA 1 cut(s) 960
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 6 cut(s) 65, 133, 566, 647, 775, 844
PleI GAGTC 2 cut(s) 505, 928
PpsI GAGTC 2 cut(s) 505, 928
PpuMI RGGWCCY 1 cut(s) 865
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 865
Psp6I CCWGG 3 cut(s) 207, 672, 960
PspFI CCCAGC 1 cut(s) 24
PspGI CCWGG 3 cut(s) 207, 672, 960
PspN4I GGNNCC 4 cut(s) 435, 866, 890, 899
PspPI GGNCC 4 cut(s) 229, 433, 865, 898
PspPPI RGGWCCY 1 cut(s) 865
PstI CTGCAG 1 cut(s) 775
PstNI CAGNNNCTG 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 902
RruI TCGCGA 1 cut(s) 585
RsaI GTAC 2 cut(s) 269, 317
RsaNI GTAC 2 cut(s) 268, 316
RseI CAYNNNNRTG 2 cut(s) 116, 792
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 3 cut(s) 662, 689, 848
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 6 cut(s) 64, 132, 565, 646, 774, 843
Sau3AI GATC 6 cut(s) 35, 183, 276, 370, 445, 518
Sau96I GGNCC 4 cut(s) 229, 433, 865, 898
SchI GAGTC 2 cut(s) 506, 928
ScrFI CCNGG 7 cut(s) 86, 209, 437, 674, 862, 902, 962
SduI GDGCHC 2 cut(s) 111, 860
SfcI CTRYAG 1 cut(s) 771
SinI GGWCC 4 cut(s) 229, 433, 865, 898
SmiMI CAYNNNNRTG 2 cut(s) 116, 792
SmlI CTYRAG 2 cut(s) 597, 609
SmoI CTYRAG 2 cut(s) 597, 609
SphI GCATGC 1 cut(s) 915
Sse9I AATT 5 cut(s) 330, 364, 550, 657, 782
SsiI CCGC 5 cut(s) 132, 220, 346, 461, 645
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 7 cut(s) 84, 207, 435, 672, 860, 900, 960
StyI CCWWGG 2 cut(s) 892, 916
TaaI ACNGT 2 cut(s) 44, 149
TaqI TCGA 4 cut(s) 30, 138, 517, 939
TaqII GACCGA 1 cut(s) 48
TasI AATT 5 cut(s) 330, 364, 550, 657, 782
TatI WGTACW 1 cut(s) 267
TauI GCSGC 2 cut(s) 134, 648
TfiI GAWTC 3 cut(s) 94, 311, 485
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 1 cut(s) 290
TseI GCWGC 4 cut(s) 63, 564, 773, 842
TspDTI ATGAA 4 cut(s) 17, 543, 794, 804
TspGWI ACGGA 3 cut(s) 116, 446, 797
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 902
VpaK11BI GGWCC 4 cut(s) 229, 433, 865, 898
XapI RAATTY 2 cut(s) 364, 550
XceI RCATGY 1 cut(s) 915
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.