Rmu_sc0020930.1_g000001
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020930.1
OG0013075
Physical Location & Seq
Reverse (-)
2 .. 382
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020930.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
atgaaaggagagcaaaccctaccggagtttcaccactcaaatggcggcggctccggcagccggcgaactcgttctcaggtagcaccggactggaccgaaacggatttactcatcctggtgaacgaggtcaccgccgtcgaagccgattgccggaaagagttctcgtccttccagaaatggaagatcgtcgcgcaaaactgcaccgctctgggcgtgcctcggtctctggaccagtaccgccgcaagtgggaggcgctgctccacgactacaagatcatcgaccactggaattcacagtcgggagcttctgcttcgtactgggctctggagagtgataggaggaagcagtttgggcttccgcagagtttcgatcgtgagctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

127

Amino Acids

14.6

Weight (kDa)

6.9

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 206
AccII CGCG 1 cut(s) 191
AciI CCGC 7 cut(s) 45, 48, 132, 204, 238, 241, 359
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 2 cut(s) 236, 317
AfiI CCNNNNNNNGG 3 cut(s) 60, 150, 247
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 305, 379
AluI AGCT 2 cut(s) 305, 379
Alw26I GTCTC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 57, 256
ApoI RAATTY 1 cut(s) 289
Asp700I GAANNNNTTC 2 cut(s) 70, 158
AspLEI GCGC 2 cut(s) 193, 256
AspS9I GGNCC 2 cut(s) 93, 229
AsuHPI GGTGA 3 cut(s) 23, 121, 130
AvaII GGWCC 2 cut(s) 93, 229
BanII GRGCYC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 69, 243
BceAI ACGGC 1 cut(s) 119
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 5 cut(s) 46, 49, 58, 241, 257
BlsI GCNGC 5 cut(s) 47, 50, 59, 242, 258
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 93, 229
BmgT120I GGNCC 2 cut(s) 93, 229
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 347
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 2 cut(s) 22, 85
Bsc4I CCNNNNNNNGG 3 cut(s) 60, 150, 247
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 4 cut(s) 95, 232, 290, 323
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 60, 150, 247
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 4 cut(s) 95, 232, 290, 323
BseXI GCAGC 2 cut(s) 69, 243
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 373
BsiSI CCGG 5 cut(s) 23, 54, 61, 86, 151
BslI CCNNNNNNNGG 3 cut(s) 60, 150, 247
BsmAI GTCTC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 3 cut(s) 183, 273, 370
BspACI CCGC 7 cut(s) 45, 48, 132, 204, 238, 241, 359
BspCNI CTCAG 1 cut(s) 88
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 60
BsrI ACTGG 4 cut(s) 95, 232, 290, 323
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 3 cut(s) 183, 273, 370
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 297
BstC8I GCNNGC 2 cut(s) 62, 215
BstDEI CTNAG 1 cut(s) 75
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 193, 256
BstKTI GATC 3 cut(s) 186, 276, 373
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 183, 273, 370
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 4 cut(s) 54, 57, 140, 352
BstNI CCWGG 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 69, 243
BstXI CCANNNNNNTGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 62, 215
CfoI GCGC 2 cut(s) 193, 256
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 93, 229
Csp6I GTAC 2 cut(s) 235, 316
CviJI RGCY 7 cut(s) 51, 60, 143, 305, 323, 355, 379
CviKI_1 RGCY 7 cut(s) 51, 60, 143, 305, 323, 355, 379
CviQI GTAC 2 cut(s) 235, 316
DdeI CTNAG 1 cut(s) 75
DpnI GATC 3 cut(s) 185, 275, 372
DpnII GATC 3 cut(s) 183, 273, 370
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 93, 229
Eco91I GGTNACC 1 cut(s) 127
EcoO65I GGTNACC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 325
Fnu4HI GCNGC 5 cut(s) 46, 49, 58, 241, 257
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 5 cut(s) 46, 49, 58, 241, 257
GlaI GCGC 2 cut(s) 192, 255
GluI GCNGC 5 cut(s) 46, 49, 58, 241, 257
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 257
HapII CCGG 5 cut(s) 23, 54, 61, 86, 151
HhaI GCGC 2 cut(s) 193, 256
Hin6I GCGC 2 cut(s) 191, 254
HinP1I GCGC 2 cut(s) 191, 254
HpaII CCGG 5 cut(s) 23, 54, 61, 86, 151
HphI GGTGA 3 cut(s) 23, 121, 130
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 5 cut(s) 172, 227, 300, 326, 374
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 140, 191
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 57, 140, 352
HpyF3I CTNAG 1 cut(s) 75
HspAI GCGC 2 cut(s) 191, 254
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 3 cut(s) 183, 273, 370
LmnI GCTCC 3 cut(s) 56, 264, 302
Lsp1109I GCAGC 2 cut(s) 69, 243
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 185, 275, 372
MbiI CCGCTC 1 cut(s) 206
MboI GATC 3 cut(s) 183, 273, 370
MboII GAAGA 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 289
MnlI CCTC 4 cut(s) 118, 228, 244, 333
MroNI GCCGGC 1 cut(s) 60
MroXI GAANNNNTTC 2 cut(s) 70, 158
MslI CAYNNNNRTG 2 cut(s) 39, 116
MspI CCGG 5 cut(s) 23, 54, 61, 86, 151
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 4 cut(s) 54, 57, 140, 352
NaeI GCCGGC 1 cut(s) 62
NdeII GATC 3 cut(s) 183, 273, 370
NgoMIV GCCGGC 1 cut(s) 60
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 62
PdmI GAANNNNTTC 2 cut(s) 70, 158
PkrI GCNGC 5 cut(s) 47, 50, 59, 242, 258
Ple19I CGATCG 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 114
PspEI GGTNACC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 93, 229
PvuI CGATCG 1 cut(s) 373
RsaI GTAC 2 cut(s) 236, 317
RsaNI GTAC 2 cut(s) 235, 316
RseI CAYNNNNRTG 2 cut(s) 39, 116
SatI GCNGC 5 cut(s) 46, 49, 58, 241, 257
Sau3AI GATC 3 cut(s) 183, 273, 370
Sau96I GGNCC 2 cut(s) 93, 229
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 325
SetI ASST 4 cut(s) 81, 129, 307, 381
SinI GGWCC 2 cut(s) 93, 229
SmiMI CAYNNNNRTG 2 cut(s) 39, 116
Sse9I AATT 1 cut(s) 289
SsiI CCGC 7 cut(s) 45, 48, 132, 204, 238, 241, 359
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 297
TaqI TCGA 3 cut(s) 138, 279, 369
TaqII GACCGA 2 cut(s) 110, 210
TasI AATT 1 cut(s) 289
TauI GCSGC 3 cut(s) 48, 51, 243
TscAI CASTG 1 cut(s) 290
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 2 cut(s) 57, 256
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 290
VpaK11BI GGWCC 2 cut(s) 93, 229
XapI RAATTY 1 cut(s) 289
XmnI GAANNNNTTC 2 cut(s) 70, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.