pycom08g10350
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0013075
Physical Location & Seq
Forward (+)
8694859 .. 8696879
2021 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10350.1

Sequence Viewer

Length: 978 bp
ATGAAACCCGAACAAACCCCGTCCCAGCTCGACCGATCTCACCGTTCTTCCGGCAACCGGCGCAGCACGCGTTCCCAAGTAGCCCCGGACTGGAATCCGACGGACGAGCTCATCCTCGTGAACGAGGTCGCCGCCGTCGAGGCCGACTGCCTGAAAGCGCTGTCGTCGTTTCAGAAATGGAAGATCATAGCTCAGAACTGCTTTGCCCTGGGTGTGTCGCGGACATTGGACCAGTATCGCCGGAAGTGGGACGCTTTGTTCGGCGAGTACAAGGGGATCAAGCAGTGGGAGGCGAAGTGCCGAGCTTCGGATTCGTACTGGGTTTTGGGAATTGAGAGGAGGAAGCGGAATGGGTTGCCGGAGAAATTTGATCAGGAGCTGTTTAGCGGGATCGATAAGCTTGTAAGGGTGAGGGGGAACCAATCGGATACGGACCCGGATAGTGATCCCGAAGATGAGGCGGAGGCTGAGCCGAAGGAGGAACTTGATTCCAAGCCAGAGTCCAAGAGGAGAAAGCGTCGATCAATACCTCAGAAAAGCTGTCCTAAAGAAAATTCATTGAGAAGCTGCAAGAGAGAAAAGCCTCACGAAACTCATGCTCAAGAAAAACCTCAAGAAACCCATGCAGAAGAAAAACCTGTGGGAAGCGGCTTAAAAGCAATTCCTACGAAGAGCCTGGCAGAAGAACAGCCTCAGAAGAGCTGGGTGAAGAAAAAACTTACAAATAGTCAAAGAAAAGAGGAGGCAATCAGCATTGAAGAACAAGAGAAAATTGCGGCTATGAAATTGCATGAAAGTGCAGAACTAATCCGTGCTATCGTTACTGAGACACCTGACCATGAGGCTGCTGGCGTGAAGAGCACCGGGGACCTCCAAACTGATTTTGTTAGGTGCCAAGGGGACCGGGTCATTGCATGCCTCGGCGATATTGTGAAGACTCTCGACCAGCTCCGTCATCTTGTCCAGGAATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

326

Amino Acids

37.02

Weight (kDa)

7.05

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 891
AccII CGCG 2 cut(s) 70, 220
AciI CCGC 7 cut(s) 132, 220, 346, 387, 461, 648, 776
AclWI GGATC 3 cut(s) 284, 398, 440
AcsI RAATTY 2 cut(s) 365, 553
AfaI GTAC 2 cut(s) 269, 317
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 1 cut(s) 758
AjnI CCWGG 3 cut(s) 207, 675, 963
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
Alw21I GWGCWC 2 cut(s) 111, 863
Alw26I GTCTC 1 cut(s) 821
AlwI GGATC 3 cut(s) 284, 398, 440
AlwNI CAGNNNCTG 1 cut(s) 379
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 63, 567, 845
ApoI RAATTY 2 cut(s) 365, 553
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspLEI GCGC 2 cut(s) 63, 160
AspS9I GGNCC 4 cut(s) 229, 433, 868, 901
AsuC2I CCSGG 4 cut(s) 86, 437, 865, 905
AsuHPI GGTGA 3 cut(s) 32, 421, 718
AvaII GGWCC 4 cut(s) 229, 433, 868, 901
BanI GGYRCC 1 cut(s) 891
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 941
Bbv12I GWGCWC 2 cut(s) 111, 863
BbvI GCAGC 3 cut(s) 75, 554, 832
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 3 cut(s) 209, 677, 965
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 4 cut(s) 86, 437, 865, 905
BcoDI GTCTC 1 cut(s) 821
BfoI RGCGCY 1 cut(s) 161
BfuI GTATCC 1 cut(s) 421
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 6 cut(s) 64, 132, 568, 649, 777, 846
BlpI GCTNAGC 1 cut(s) 468
BlsI GCNGC 6 cut(s) 65, 133, 569, 650, 778, 847
Bme1390I CCNGG 7 cut(s) 86, 209, 437, 677, 865, 905, 965
Bme18I GGWCC 4 cut(s) 229, 433, 868, 901
BmgT120I GGNCC 4 cut(s) 229, 433, 868, 901
BmiI GGNNCC 5 cut(s) 419, 435, 869, 893, 902
BmrFI CCNGG 7 cut(s) 86, 209, 437, 677, 865, 905, 965
BmrI ACTGGG 1 cut(s) 328
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 941
Bpu1102I GCTNAGC 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 585, 597
BpuMI CCSGG 4 cut(s) 86, 437, 865, 905
Bsa29I ATCGAT 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 6 cut(s) 84, 207, 208, 864, 895, 919
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 502, 532
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 3 cut(s) 95, 232, 323
Bse3DI GCAATG 1 cut(s) 909
Bse8I GATNNNNATC 1 cut(s) 444
BseBI CCWGG 3 cut(s) 209, 677, 965
BseCI ATCGAT 1 cut(s) 393
BseDI CCNNGG 6 cut(s) 84, 207, 208, 864, 895, 919
BseGI GGATG 1 cut(s) 111
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 5 cut(s) 206, 459, 545, 707, 816
BseNI ACTGG 3 cut(s) 95, 232, 323
BseRI GAGGAG 3 cut(s) 352, 523, 755
BseXI GCAGC 3 cut(s) 75, 554, 832
BseYI CCCAGC 2 cut(s) 24, 702
BsgI GTGCAG 1 cut(s) 819
Bsh1236I CGCG 2 cut(s) 70, 220
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 891
BshVI ATCGAT 1 cut(s) 393
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 111, 863
BsiSI CCGG 8 cut(s) 51, 58, 86, 241, 359, 437, 864, 904
BslFI GGGAC 4 cut(s) 7, 263, 881, 914
BslI CCNNNNNNNGG 4 cut(s) 57, 90, 247, 307
BsmAI GTCTC 1 cut(s) 821
BsmFI GGGAC 4 cut(s) 7, 263, 881, 914
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 2 cut(s) 111, 863
Bsp143I GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
Bsp1720I GCTNAGC 1 cut(s) 468
BspACI CCGC 7 cut(s) 132, 220, 346, 387, 461, 648, 776
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 5 cut(s) 205, 460, 544, 706, 817
BspDI ATCGAT 1 cut(s) 393
BspFNI CGCG 2 cut(s) 70, 220
BspLI GGNNCC 5 cut(s) 419, 435, 869, 893, 902
BspPI GGATC 3 cut(s) 284, 398, 440
BspQI GCTCTTC 3 cut(s) 665, 692, 851
BspT107I GGYRCC 1 cut(s) 891
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 3 cut(s) 95, 232, 323
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 6 cut(s) 84, 207, 208, 864, 895, 919
BssMI GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 895
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 3 cut(s) 209, 677, 965
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 3 cut(s) 665, 692, 851
BstC8I GCNNGC 3 cut(s) 68, 850, 916
BstDEI CTNAG 5 cut(s) 192, 468, 531, 693, 825
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 2 cut(s) 70, 220
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 2 cut(s) 63, 160
BstKTI GATC 7 cut(s) 38, 186, 279, 373, 393, 448, 524
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 4 cut(s) 60, 67, 140, 858
BstNI CCWGG 3 cut(s) 209, 677, 965
BstNSI RCATGY 1 cut(s) 918
BstSCI CCNGG 7 cut(s) 84, 207, 435, 675, 863, 903, 963
BstUI CGCG 2 cut(s) 70, 220
BstV1I GCAGC 3 cut(s) 75, 554, 832
BstV2I GAAGAC 1 cut(s) 941
Bsu15I ATCGAT 1 cut(s) 393
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 393
BtsCI GGATG 1 cut(s) 111
BtsI GCAGTG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 3 cut(s) 68, 850, 916
CaiI CAGNNNCTG 1 cut(s) 379
CfoI GCGC 2 cut(s) 63, 160
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 4 cut(s) 229, 433, 868, 901
ClaI ATCGAT 1 cut(s) 393
CseI GACGC 2 cut(s) 260, 506
Csp6I GTAC 2 cut(s) 268, 316
CviAII CATG 5 cut(s) 596, 623, 791, 839, 915
CviQI GTAC 2 cut(s) 268, 316
DdeI CTNAG 5 cut(s) 192, 468, 531, 693, 825
DpnI GATC 7 cut(s) 37, 185, 278, 372, 392, 447, 523
DpnII GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
Eam1104I CTCTTC 3 cut(s) 665, 692, 851
EarI CTCTTC 3 cut(s) 665, 692, 851
EciI GGCGGA 1 cut(s) 476
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 4 cut(s) 229, 433, 868, 901
Eco47III AGCGCT 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 868
EcoRII CCWGG 3 cut(s) 207, 675, 963
EcoT14I CCWWGG 1 cut(s) 895
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 5 cut(s) 599, 626, 794, 842, 918
FaiI YATR 7 cut(s) 188, 597, 624, 782, 792, 840, 916
FaqI GGGAC 4 cut(s) 7, 263, 881, 914
FatI CATG 5 cut(s) 595, 622, 790, 838, 914
FauI CCCGC 1 cut(s) 380
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 6 cut(s) 64, 132, 568, 649, 777, 846
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 6 cut(s) 64, 132, 568, 649, 777, 846
GlaI GCGC 2 cut(s) 62, 159
GluI GCNGC 6 cut(s) 64, 132, 568, 649, 777, 846
GsaI CCCAGC 2 cut(s) 28, 706
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 143
HapII CCGG 8 cut(s) 51, 58, 86, 241, 359, 437, 864, 904
HgaI GACGC 2 cut(s) 260, 506
HhaI GCGC 2 cut(s) 63, 160
Hin1II CATG 5 cut(s) 599, 626, 794, 842, 918
Hin6I GCGC 2 cut(s) 61, 158
HinP1I GCGC 2 cut(s) 61, 158
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 94, 311, 488, 500, 937
HpaII CCGG 8 cut(s) 51, 58, 86, 241, 359, 437, 864, 904
HphI GGTGA 3 cut(s) 32, 421, 718
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 7 cut(s) 99, 174, 195, 310, 427, 534, 696
Hpy188III TCNNGA 7 cut(s) 118, 374, 449, 587, 602, 614, 941
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 4 cut(s) 103, 140, 169, 522
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 5 cut(s) 570, 626, 790, 800, 914
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 67, 140, 858
HpyF3I CTNAG 5 cut(s) 192, 468, 531, 693, 825
Hsp92II CATG 5 cut(s) 599, 626, 794, 842, 918
HspAI GCGC 2 cut(s) 61, 158
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
LguI GCTCTTC 3 cut(s) 665, 692, 851
LmnI GCTCC 2 cut(s) 376, 954
Lsp1109I GCAGC 3 cut(s) 75, 554, 832
MaeIII GTNAC 1 cut(s) 820
MalI GATC 7 cut(s) 37, 185, 278, 372, 392, 447, 523
MboI GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
MhlI GDGCHC 2 cut(s) 111, 863
MluCI AATT 6 cut(s) 330, 365, 553, 660, 771, 785
MluI ACGCGT 1 cut(s) 68
MlyI GAGTC 2 cut(s) 509, 931
MmeI TCCRAC 1 cut(s) 122
MseI TTAA 1 cut(s) 653
MslI CAYNNNNRTG 2 cut(s) 116, 795
MspI CCGG 8 cut(s) 51, 58, 86, 241, 359, 437, 864, 904
MspR9I CCNGG 7 cut(s) 86, 209, 437, 677, 865, 905, 965
MvaI CCWGG 3 cut(s) 209, 677, 965
MvnI CGCG 2 cut(s) 70, 220
MwoI GCNNNNNNNGC 4 cut(s) 60, 67, 140, 858
NciI CCSGG 4 cut(s) 86, 437, 865, 905
NdeII GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
NlaIII CATG 5 cut(s) 599, 626, 794, 842, 918
NlaIV GGNNCC 5 cut(s) 419, 435, 869, 893, 902
NmeAIII GCCGAG 2 cut(s) 326, 900
NspI RCATGY 1 cut(s) 918
PaeI GCATGC 1 cut(s) 918
PasI CCCWGGG 1 cut(s) 208
PciSI GCTCTTC 3 cut(s) 665, 692, 851
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 3 cut(s) 94, 311, 488
PflFI GACNNNGTC 1 cut(s) 905
PfoI TCCNGGA 1 cut(s) 963
PkrI GCNGC 6 cut(s) 65, 133, 569, 650, 778, 847
PleI GAGTC 2 cut(s) 508, 931
PpsI GAGTC 2 cut(s) 508, 931
PpuMI RGGWCCY 1 cut(s) 868
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 868
Psp6I CCWGG 3 cut(s) 207, 675, 963
PspFI CCCAGC 2 cut(s) 24, 702
PspGI CCWGG 3 cut(s) 207, 675, 963
PspN4I GGNNCC 5 cut(s) 419, 435, 869, 893, 902
PspPI GGNCC 4 cut(s) 229, 433, 868, 901
PspPPI RGGWCCY 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 379
PsyI GACNNNGTC 1 cut(s) 905
RsaI GTAC 2 cut(s) 269, 317
RsaNI GTAC 2 cut(s) 268, 316
RseI CAYNNNNRTG 2 cut(s) 116, 795
SacI GAGCTC 1 cut(s) 111
SapI GCTCTTC 3 cut(s) 665, 692, 851
SaqAI TTAA 1 cut(s) 653
SatI GCNGC 6 cut(s) 64, 132, 568, 649, 777, 846
Sau3AI GATC 7 cut(s) 35, 183, 276, 370, 390, 445, 521
Sau96I GGNCC 4 cut(s) 229, 433, 868, 901
SchI GAGTC 2 cut(s) 509, 931
ScrFI CCNGG 7 cut(s) 86, 209, 437, 677, 865, 905, 965
SduI GDGCHC 2 cut(s) 111, 863
SinI GGWCC 4 cut(s) 229, 433, 868, 901
SmiMI CAYNNNNRTG 2 cut(s) 116, 795
SmlI CTYRAG 2 cut(s) 600, 612
SmoI CTYRAG 2 cut(s) 600, 612
SphI GCATGC 1 cut(s) 918
Sse9I AATT 6 cut(s) 330, 365, 553, 660, 771, 785
SsiI CCGC 7 cut(s) 132, 220, 346, 387, 461, 648, 776
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 7 cut(s) 84, 207, 435, 675, 863, 903, 963
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 5 cut(s) 30, 138, 393, 520, 942
TaqII GACCGA 1 cut(s) 48
TasI AATT 6 cut(s) 330, 365, 553, 660, 771, 785
TatI WGTACW 1 cut(s) 267
TauI GCSGC 3 cut(s) 134, 651, 779
TfiI GAWTC 3 cut(s) 94, 311, 488
Tru1I TTAA 1 cut(s) 653
Tru9I TTAA 1 cut(s) 653
TscAI CASTG 1 cut(s) 290
TseI GCWGC 3 cut(s) 63, 567, 845
TspDTI ATGAA 4 cut(s) 17, 546, 797, 807
TspGWI ACGGA 4 cut(s) 116, 446, 800, 941
TspRI CASTG 1 cut(s) 290
Tth111I GACNNNGTC 1 cut(s) 905
VpaK11BI GGWCC 4 cut(s) 229, 433, 868, 901
XapI RAATTY 2 cut(s) 365, 553
XceI RCATGY 1 cut(s) 918
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.