RLG00000010896
MYB Family

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
5142043 .. 5144497
2455 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010896

Sequence Viewer

Length: 1560 bp
ATGAAAGGAGACCAAACCGTACCGGAGTTTCATCACTCAAATCGCGGCGGTTCCAGCAGCCGGCGAACTCGTTCTCAGGTAGCACCAGACTGGTCCGAAACGGATTTACTCATCCTGGTGAACGAGGTCGCCGCCGTCGAAGCCGATTGCCGGAAAGAGTTCTCGTCCTTCCAGAAATGGAAGATCGTGGCGCAAAACTGCACTGCTTTGGGCGTGCCTCGGTCTCTGGACCAGTACCGCCGCAAGTGGGAGGCGCTGCTCCACGACTACAAGATCATCGACCACTGGAATTCACAGTCGAGAGCTTCTGCTTCGTACTGGGCTCTGGAGAGTGATAGGAGGAAGCAGTTTGGGCTTCCGCGGAGTTTCGATCACGAGCTTTTCAAAGCCATTGGTGGTTATGAGAAGGTGCAGGAGAATCAGTCGGATACGGAGGAAGGTGAGGCTGAGGCTGACGTGGCTGATGAATATGAAGAAGCTGTGGAACCAGAGTCCAAAAGGAGAAGGCGACCGTCAACACAGCGGAAATGGAGTCCAATTCAAAATCCAGCGAGGAGGTCTATGGTTAAAAAGCCTGTACAGAAACCTCATCAGACTCGTGCAGAAGAAAGGCATGTACAAAAACCTTGCCAGACTCATGCCGCAGAAAAGCCTGTACAAAAGGCTTGTCAAACACATGTGGAGGATAAGTCTGTACAAAAGACTCGTCCAATGCTTGTAGAAGAAAAGACCATTGTAAAGCCAGTTCAAACCCATGTGGCGGAAAAGCCTGGCGAGACCCATGCAGAAGAAAAGCCTCGCCAGACCCGTGAGGAAGGAGAACCTGTTGAAAAGGCTCGCCAAACTCATGCACAAGAGAATCCTGTAGAAAAGCCTCCCCAAACTCATGCAAAAGAAAAGCCTAGCCAAACCCATGCAGAAGAGTCTCACCGAACTAATGCGGAAGGAAAGCCTGTAAATGTAGTAGGTAAGTCTTGCCAAACTCATGTGGAAGGGAAGCCTGTAGAAAAGCCTCACCAAACCCATGCAGAAGAAAAGCATGTGGAAAGCTGCCTAGAAGCAATTCCTATGGAGAACTTGGCAGAAGAAAAGCCTCACCAAACCCATTCACAAGAAAAGCCTGTGGGAAGCTGCTTAGATGCTATTCCTACGAAGATGGCAGAAGAAGTGCCTCAGAAAAGCTGGGTGAAGAAAAAACATAAGGCCTCAGAAGAACAGCCTGGGGGAAGCTGCTTAGAAGTCATTCCTATGAAGAGCATGGCAGAAAAAAAGTTTCTGAAAAGCAGTCTGAAGAGGAAGCAACAAAGTACTCAAATGGAAGAGAAACTAACGAGCATTGAAGAACAGAAGCAAATCATGACTATGAAGTTGCAGTGGAGTGCAGAACTCATCCGTGCTATTGTCACCGAGAATGCAGACCACGAGGCTGCTGATGAGAAGAGCATCAAGGACCTCCAAGCTGATTTAGTTAGGCGTCAAGGGGACCAGGTTATCGCATGCCTGGCAGATATTGTGAAGACTCTTAACCAGGTTCATCGTCTTGTCCAGGAACGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

520

Amino Acids

59.3

Weight (kDa)

7.68

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 31 - 104 2.9e-06 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013075)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 45, 361
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 1310
AcyI GRCGYC 1 cut(s) 1474
AfaI GTAC 8 cut(s) 21, 236, 317, 579, 618, 657, 696, 1309
AfiI CCNNNNNNNGG 4 cut(s) 60, 150, 247, 760
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 5 cut(s) 385, 542, 749, 830, 1340
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 7 cut(s) 114, 769, 1219, 1485, 1500, 1527, 1545
AluBI AGCT 8 cut(s) 305, 379, 479, 1050, 1131, 1182, 1230, 1460
AluI AGCT 8 cut(s) 305, 379, 479, 1050, 1131, 1182, 1230, 1460
Alw26I GTCTC 4 cut(s) 3, 228, 770, 930
AoxI GGCC 1 cut(s) 1203
ApeKI GCWGC 6 cut(s) 57, 256, 1050, 1131, 1230, 1427
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 4 cut(s) 652, 684, 691, 723
Asp700I GAANNNNTTC 4 cut(s) 70, 158, 1062, 1242
AspLEI GCGC 2 cut(s) 193, 256
AspS9I GGNCC 4 cut(s) 93, 229, 1450, 1483
AsuHPI GGTGA 7 cut(s) 130, 452, 920, 1007, 1088, 1198, 1396
AvaII GGWCC 4 cut(s) 93, 229, 1450, 1483
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 3 cut(s) 374, 597, 1421
BbsI GAAGAC 1 cut(s) 1523
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 6 cut(s) 69, 243, 1037, 1118, 1217, 1414
BccI CCATC 1 cut(s) 1150
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 4 cut(s) 3, 228, 770, 930
BfaI CTAG 2 cut(s) 903, 1055
BfmI CTRYAG 2 cut(s) 864, 1002
BfoI RGCGCY 1 cut(s) 257
BfuI GTATCC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 1309
Bme1390I CCNGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
Bme18I GGWCC 4 cut(s) 93, 229, 1450, 1483
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 93, 229, 1450, 1483
BmiI GGNNCC 3 cut(s) 52, 486, 1484
BmrFI CCNGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 2 cut(s) 1129, 1452
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 1523
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 1474
BsaI GGTCTC 3 cut(s) 3, 228, 770
BsaJI CCNNGG 3 cut(s) 218, 359, 1220
BsaWI WCCGGW 1 cut(s) 22
BsaXI ACNNNNNCTCC 6 cut(s) 407, 437, 674, 704, 810, 840
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 150, 247, 760
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 5 cut(s) 95, 232, 290, 323, 743
BseBI CCWGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
BseDI CCNNGG 3 cut(s) 218, 359, 1220
BseGI GGATG 2 cut(s) 111, 1389
BseLI CCNNNNNNNGG 4 cut(s) 60, 150, 247, 760
BseMII CTCAG 4 cut(s) 89, 438, 1187, 1221
BseNI ACTGG 5 cut(s) 95, 232, 290, 323, 743
BseRI GAGGAG 1 cut(s) 568
BseXI GCAGC 6 cut(s) 69, 243, 1037, 1118, 1217, 1414
BseYI CCCAGC 1 cut(s) 1182
BsgI GTGCAG 4 cut(s) 184, 431, 621, 1401
Bsh1236I CGCG 2 cut(s) 45, 361
Bsh1285I CGRYCG 1 cut(s) 512
BshFI GGCC 1 cut(s) 1205
BsiEI CGRYCG 1 cut(s) 512
BsiSI CCGG 3 cut(s) 23, 61, 151
BslFI GGGAC 1 cut(s) 1496
BslI CCNNNNNNNGG 4 cut(s) 60, 150, 247, 760
BsmAI GTCTC 4 cut(s) 3, 228, 770, 930
BsmFI GGGAC 1 cut(s) 1496
BsmI GAATGC 1 cut(s) 1417
BsnI GGCC 1 cut(s) 1205
Bso31I GGTCTC 3 cut(s) 3, 228, 770
Bsp1286I GDGCHC 1 cut(s) 325
Bsp1407I TGTACA 4 cut(s) 577, 616, 655, 694
Bsp143I GATC 3 cut(s) 183, 273, 370
BspANI GGCC 1 cut(s) 1205
BspCNI CTCAG 4 cut(s) 88, 439, 1186, 1220
BspFNI CGCG 2 cut(s) 45, 361
BspHI TCATGA 1 cut(s) 1356
BspLI GGNNCC 3 cut(s) 52, 486, 1484
BspQI GCTCTTC 2 cut(s) 1247, 1433
BspTNI GGTCTC 3 cut(s) 3, 228, 770
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 4 cut(s) 577, 616, 655, 694
BsrI ACTGG 5 cut(s) 95, 232, 290, 323, 743
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 3 cut(s) 218, 359, 1220
BssMI GATC 3 cut(s) 183, 273, 370
BssNI GRCGYC 1 cut(s) 1474
BssSI CACGAG 3 cut(s) 374, 597, 1421
Bst2BI CACGAG 3 cut(s) 374, 597, 1421
Bst2UI CCWGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
Bst4CI ACNGT 3 cut(s) 19, 297, 513
Bst6I CTCTTC 5 cut(s) 915, 1247, 1286, 1314, 1433
BstACI GRCGYC 1 cut(s) 1474
BstAUI TGTACA 4 cut(s) 577, 616, 655, 694
BstC8I GCNNGC 4 cut(s) 62, 215, 838, 1498
BstDEI CTNAG 6 cut(s) 75, 447, 1135, 1173, 1207, 1234
BstDSI CCRYGG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 111, 1389
BstFNI CGCG 2 cut(s) 45, 361
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 193, 256
BstKTI GATC 3 cut(s) 186, 276, 373
BstMAI GTCTC 4 cut(s) 3, 228, 770, 930
BstMBI GATC 3 cut(s) 183, 273, 370
BstMCI CGRYCG 1 cut(s) 512
BstMWI GCNNNNNNNGC 5 cut(s) 54, 140, 352, 458, 1502
BstNI CCWGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
BstNSI RCATGY 4 cut(s) 617, 680, 1043, 1500
BstSCI CCNGG 7 cut(s) 114, 769, 1219, 1485, 1500, 1527, 1545
BstSFI CTRYAG 2 cut(s) 864, 1002
BstUI CGCG 2 cut(s) 45, 361
BstV1I GCAGC 6 cut(s) 69, 243, 1037, 1118, 1217, 1414
BstV2I GAAGAC 1 cut(s) 1523
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 1 cut(s) 1205
BtgI CCRYGG 1 cut(s) 359
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 111, 1389
BtsI GCAGTG 2 cut(s) 201, 1379
BtsIMutI CAGTG 3 cut(s) 201, 283, 1379
Cac8I GCNNGC 4 cut(s) 62, 215, 838, 1498
CciI TCATGA 1 cut(s) 1356
CfoI GCGC 2 cut(s) 193, 256
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 4 cut(s) 93, 229, 1450, 1483
Cfr42I CCGCGG 1 cut(s) 362
CseI GACGC 1 cut(s) 1463
CsiI ACCWGGT 2 cut(s) 1485, 1527
Csp6I GTAC 8 cut(s) 20, 235, 316, 578, 617, 656, 695, 1308
CviQI GTAC 8 cut(s) 20, 235, 316, 578, 617, 656, 695, 1308
DdeI CTNAG 6 cut(s) 75, 447, 1135, 1173, 1207, 1234
DpnI GATC 3 cut(s) 185, 275, 372
DpnII GATC 3 cut(s) 183, 273, 370
Eam1104I CTCTTC 5 cut(s) 915, 1247, 1286, 1314, 1433
EarI CTCTTC 5 cut(s) 915, 1247, 1286, 1314, 1433
EciI GGCGGA 1 cut(s) 776
Eco147I AGGCCT 1 cut(s) 1205
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 3 cut(s) 3, 228, 770
Eco47I GGWCC 4 cut(s) 93, 229, 1450, 1483
Eco57I CTGAAG 1 cut(s) 1310
EcoO109I RGGNCCY 1 cut(s) 1450
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 7 cut(s) 114, 769, 1219, 1485, 1500, 1527, 1545
EcoT38I GRGCYC 1 cut(s) 325
FaqI GGGAC 1 cut(s) 1496
FokI GGATG 2 cut(s) 98, 1376
FriOI GRGCYC 1 cut(s) 325
FspBI CTAG 2 cut(s) 903, 1055
GlaI GCGC 2 cut(s) 192, 255
GsaI CCCAGC 1 cut(s) 1186
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 1 cut(s) 1205
HapII CCGG 3 cut(s) 23, 61, 151
HgaI GACGC 1 cut(s) 1463
HhaI GCGC 2 cut(s) 193, 256
Hin1I GRCGYC 1 cut(s) 1474
Hin6I GCGC 2 cut(s) 191, 254
HinP1I GCGC 2 cut(s) 191, 254
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 9 cut(s) 418, 491, 532, 595, 634, 703, 859, 923, 1519
HpaII CCGG 3 cut(s) 23, 61, 151
HphI GGTGA 7 cut(s) 130, 452, 920, 1007, 1088, 1198, 1396
Hpy166II GTNNAC 2 cut(s) 121, 516
Hpy188I TCNGA 7 cut(s) 97, 427, 594, 1176, 1210, 1278, 1290
Hpy188III TCNNGA 6 cut(s) 172, 227, 300, 326, 374, 1357
Hpy8I GTNNAC 2 cut(s) 121, 516
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 7 cut(s) 178, 400, 431, 498, 809, 938, 986
HpyCH4III ACNGT 3 cut(s) 19, 297, 513
HpyCH4IV ACGT 2 cut(s) 456, 1552
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 140, 352, 458, 1502
HpyF3I CTNAG 6 cut(s) 75, 447, 1135, 1173, 1207, 1234
HpySE526I ACGT 2 cut(s) 456, 1552
Hsp92I GRCGYC 1 cut(s) 1474
HspAI GCGC 2 cut(s) 191, 254
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
KspI CCGCGG 1 cut(s) 362
Kzo9I GATC 3 cut(s) 183, 273, 370
LguI GCTCTTC 2 cut(s) 1247, 1433
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 6 cut(s) 69, 243, 1037, 1118, 1217, 1414
LweI GCATC 2 cut(s) 1129, 1452
MabI ACCWGGT 2 cut(s) 1485, 1527
MaeI CTAG 2 cut(s) 903, 1055
MaeII ACGT 2 cut(s) 456, 1552
MaeIII GTNAC 1 cut(s) 1402
MalI GATC 3 cut(s) 185, 275, 372
MboI GATC 3 cut(s) 183, 273, 370
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 3 cut(s) 289, 537, 1062
MlyI GAGTC 7 cut(s) 500, 541, 589, 628, 697, 932, 1513
MmeI TCCRAC 1 cut(s) 405
MroNI GCCGGC 1 cut(s) 60
MroXI GAANNNNTTC 4 cut(s) 70, 158, 1062, 1242
MseI TTAA 2 cut(s) 567, 1524
MslI CAYNNNNRTG 3 cut(s) 116, 1247, 1361
MspA1I CMGCKG 2 cut(s) 361, 523
MspI CCGG 3 cut(s) 23, 61, 151
MspR9I CCNGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
Mva1269I GAATGC 1 cut(s) 1417
MvaI CCWGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
MvnI CGCG 2 cut(s) 45, 361
MwoI GCNNNNNNNGC 5 cut(s) 54, 140, 352, 458, 1502
NaeI GCCGGC 1 cut(s) 62
NdeII GATC 3 cut(s) 183, 273, 370
NgoMIV GCCGGC 1 cut(s) 60
NlaIV GGNNCC 3 cut(s) 52, 486, 1484
NmuCI GTSAC 1 cut(s) 1402
NspI RCATGY 4 cut(s) 617, 680, 1043, 1500
PaeI GCATGC 1 cut(s) 1500
PagI TCATGA 1 cut(s) 1356
PceI AGGCCT 1 cut(s) 1205
PciI ACATGT 1 cut(s) 676
PciSI GCTCTTC 2 cut(s) 1247, 1433
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 805
PctI GAATGC 1 cut(s) 1417
PdiI GCCGGC 1 cut(s) 62
PdmI GAANNNNTTC 4 cut(s) 70, 158, 1062, 1242
PfeI GAWTC 2 cut(s) 418, 859
PfoI TCCNGGA 1 cut(s) 1545
PleI GAGTC 7 cut(s) 499, 540, 589, 628, 697, 931, 1513
PpsI GAGTC 7 cut(s) 499, 540, 589, 628, 697, 931, 1513
PpuMI RGGWCCY 1 cut(s) 1450
PscI ACATGT 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 1450
Psp6I CCWGG 7 cut(s) 114, 769, 1219, 1485, 1500, 1527, 1545
PspFI CCCAGC 1 cut(s) 1182
PspGI CCWGG 7 cut(s) 114, 769, 1219, 1485, 1500, 1527, 1545
PspN4I GGNNCC 3 cut(s) 52, 486, 1484
PspPI GGNCC 4 cut(s) 93, 229, 1450, 1483
PspPPI RGGWCCY 1 cut(s) 1450
PsrI GAACNNNNNNTAC 2 cut(s) 729, 761
RsaI GTAC 8 cut(s) 21, 236, 317, 579, 618, 657, 696, 1309
RsaNI GTAC 8 cut(s) 20, 235, 316, 578, 617, 656, 695, 1308
RseI CAYNNNNRTG 3 cut(s) 116, 1247, 1361
SacII CCGCGG 1 cut(s) 362
SapI GCTCTTC 2 cut(s) 1247, 1433
SaqAI TTAA 2 cut(s) 567, 1524
Sau3AI GATC 3 cut(s) 183, 273, 370
Sau96I GGNCC 4 cut(s) 93, 229, 1450, 1483
ScaI AGTACT 1 cut(s) 1309
SchI GAGTC 7 cut(s) 500, 541, 589, 628, 697, 932, 1513
ScrFI CCNGG 7 cut(s) 116, 771, 1221, 1487, 1502, 1529, 1547
SduI GDGCHC 1 cut(s) 325
SexAI ACCWGGT 2 cut(s) 1485, 1527
SfaNI GCATC 2 cut(s) 1129, 1452
SfcI CTRYAG 2 cut(s) 864, 1002
Sfr303I CCGCGG 1 cut(s) 362
SgrBI CCGCGG 1 cut(s) 362
SinI GGWCC 4 cut(s) 93, 229, 1450, 1483
SmiMI CAYNNNNRTG 3 cut(s) 116, 1247, 1361
SphI GCATGC 1 cut(s) 1500
Sse9I AATT 3 cut(s) 289, 537, 1062
SseBI AGGCCT 1 cut(s) 1205
SspMI CTAG 2 cut(s) 903, 1055
StuI AGGCCT 1 cut(s) 1205
StyD4I CCNGG 7 cut(s) 114, 769, 1219, 1485, 1500, 1527, 1545
TaaI ACNGT 3 cut(s) 19, 297, 513
TaiI ACGT 2 cut(s) 459, 1555
TaqI TCGA 4 cut(s) 138, 279, 299, 369
TaqII GACCGA 1 cut(s) 210
TasI AATT 3 cut(s) 289, 537, 1062
TatI WGTACW 5 cut(s) 577, 616, 655, 694, 1307
TauI GCSGC 4 cut(s) 48, 134, 243, 644
TfiI GAWTC 2 cut(s) 418, 859
Tru1I TTAA 2 cut(s) 567, 1524
Tru9I TTAA 2 cut(s) 567, 1524
TscAI CASTG 3 cut(s) 208, 290, 1379
TseFI GTSAC 1 cut(s) 1402
TseI GCWGC 6 cut(s) 57, 256, 1050, 1131, 1230, 1427
Tsp45I GTSAC 1 cut(s) 1402
TspDTI ATGAA 7 cut(s) 17, 20, 480, 486, 1265, 1379, 1523
TspGWI ACGGA 3 cut(s) 116, 446, 1382
TspRI CASTG 3 cut(s) 208, 290, 1379
VpaK11BI GGWCC 4 cut(s) 93, 229, 1450, 1483
XapI RAATTY 1 cut(s) 289
XceI RCATGY 4 cut(s) 617, 680, 1043, 1500
XmnI GAANNNNTTC 4 cut(s) 70, 158, 1062, 1242
XspI CTAG 2 cut(s) 903, 1055
ZrmI AGTACT 1 cut(s) 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.