Rmu_ssc0000148.1_g000005
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000148.1
OG0013075
Physical Location & Seq
Reverse (-)
23681 .. 26067
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000148.1_g000005.1.cds

Sequence Viewer

Length: 1590 bp
atgaaaggagagcaaaccctaccggagtttcaccactcaaatggcggcggctccggcagccggcgaactcgttctcaggtagcaccggactggaccgaaacggatttactcatcctggtgaacgaggtcaccgccgtcgaagccgattgccggaaagagttctcgtccttccagaaatggaagatcgtcgcgcaaaactgcaccgctctgggcgtgcctcggtctctggaccagtaccgccgcaagtgggaggcgctgctccacgactacaaggtcatcgaccactggaattcacagtcgagagcttctgcttcgtactgggctctggagagtgataggaggaagcagtttgggcttccgcagagtttcgatcgtgagcttttcgaagccattggcggctatgagaaggtgcaggcgaatcagtcggatacggaggaaggtgaggctgaggctgacgtggctgatgaatatgaagaagctgtggaaccagagtccaagaggaggaggcgaccgtcaacgcagcagaaatggagtccaattcaaaatccggcgaggaggtctatggttaaaaagcctgtacagaaacctcatcagactcgtgcagaagaaaggcatgtacaaaaacctcgccattctcatgccgcagaaaagcctgtacaaaaggcttgtcaaacgcatgtggaggataagtctgtacaaaagactcgtccaatgcgtgtagaagaaaagaccattgtaaagccagttcaaaccaatgtggcggaaaagcctggcgagaaccatgcagaagaaaagccttgccagacccatgaggaaggagaacctgttgaaaaggctcgccaaactcatgcacaagagaagcctgtagaaaagcctccccaaactcatgcaaaagaaaagcctcaccaaacccatgcagaagagtcttaccaaattaatgcggaaggaaagcctgtaaaaaatcctcccaaaatccaggcagaagaaaatgtagtaggtaagtcttgccaaactcatgtggaagggaagcctgtagaaaagcctcaccaaacccatgcagaagaaaagcatgtggaaagctgcctagaagcaattcctatggagaacttggcagaagaaaagcctcaccaaacccattcacaagaaaagcctctgggaagctgcttagatgctattcctacgaagatggcagaagaagggcctcagaaaagctgggtgaagaaaaaacataaggcctcagaagaacagcctgggggaagctgcttagaagtcattcctatgaagagcatggcagaaaaaaagactctgaaaagcagtctgaagaggaagcaacaaagtactcaaatggaagagaagataacgggcattgaagaacagaagcaaatcatggctatgaagttgcagtggagtgcagaactcatccgtgctattgtcaccgagaatgcagaccgtgaggctgctgatgagaagagcatgaaagacctccaagctgatttagttaggcgtcaaggggaccaggttatcgcatgcctggcagatattgtgaagactcttaaccaggttcatcgtcttgtccaggaacgtaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

529

Amino Acids

60.26

Weight (kDa)

7.11

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AccBSI CCGCTC 1 cut(s) 206
AccII CGCG 1 cut(s) 191
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 1340
AcyI GRCGYC 1 cut(s) 1504
AfaI GTAC 7 cut(s) 236, 317, 579, 618, 657, 696, 1339
AfiI CCNNNNNNNGG 4 cut(s) 60, 150, 247, 501
AgsI TTSAA 4 cut(s) 542, 749, 830, 1370
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 8 cut(s) 114, 769, 975, 1249, 1515, 1530, 1557, 1575
AluBI AGCT 8 cut(s) 305, 379, 479, 1080, 1161, 1212, 1260, 1490
AluI AGCT 8 cut(s) 305, 379, 479, 1080, 1161, 1212, 1260, 1490
Alw26I GTCTC 1 cut(s) 228
AoxI GGCC 2 cut(s) 1199, 1233
ApeKI GCWGC 7 cut(s) 57, 256, 520, 1080, 1161, 1260, 1457
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 4 cut(s) 652, 684, 691, 723
AseI ATTAAT 1 cut(s) 936
Asp700I GAANNNNTTC 4 cut(s) 70, 158, 1092, 1272
AspLEI GCGC 2 cut(s) 193, 256
AspS9I GGNCC 4 cut(s) 93, 229, 1199, 1513
AsuHPI GGTGA 9 cut(s) 23, 121, 130, 452, 896, 1037, 1118, 1228, 1426
AsuII TTCGAA 1 cut(s) 384
AvaII GGWCC 3 cut(s) 93, 229, 1513
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 1553
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 7 cut(s) 69, 243, 532, 1067, 1148, 1247, 1444
BccI CCATC 1 cut(s) 1180
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 764, 798
BciT130I CCWGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
BciVI GTATCC 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 1085
BfmI CTRYAG 2 cut(s) 864, 1032
BfoI RGCGCY 1 cut(s) 257
BfuI GTATCC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 1339
Bme1390I CCNGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
Bme18I GGWCC 3 cut(s) 93, 229, 1513
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 4 cut(s) 93, 229, 1199, 1513
BmiI GGNNCC 3 cut(s) 52, 486, 1514
BmrFI CCNGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 1159
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 1553
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 1504
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 218, 1250
BsaWI WCCGGW 2 cut(s) 22, 85
BsaXI ACNNNNNCTCC 4 cut(s) 674, 704, 810, 840
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 150, 247, 501
Bse118I RCCGGY 1 cut(s) 60
Bse1I ACTGG 5 cut(s) 95, 232, 290, 323, 743
BseBI CCWGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
BseDI CCNNGG 2 cut(s) 218, 1250
BseGI GGATG 2 cut(s) 111, 1419
BseLI CCNNNNNNNGG 4 cut(s) 60, 150, 247, 501
BseMII CTCAG 4 cut(s) 89, 438, 1217, 1251
BseNI ACTGG 5 cut(s) 95, 232, 290, 323, 743
BseRI GAGGAG 3 cut(s) 514, 517, 568
BseXI GCAGC 7 cut(s) 69, 243, 532, 1067, 1148, 1247, 1444
BseYI CCCAGC 1 cut(s) 1212
BsgI GTGCAG 4 cut(s) 184, 431, 621, 1431
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 2 cut(s) 373, 512
BshFI GGCC 2 cut(s) 1201, 1235
BsiEI CGRYCG 2 cut(s) 373, 512
BsiSI CCGG 6 cut(s) 23, 54, 61, 86, 151, 548
BslFI GGGAC 1 cut(s) 1526
BslI CCNNNNNNNGG 4 cut(s) 60, 150, 247, 501
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 1526
BsmI GAATGC 1 cut(s) 1447
BsnI GGCC 2 cut(s) 1201, 1235
Bso31I GGTCTC 1 cut(s) 228
Bsp119I TTCGAA 1 cut(s) 384
Bsp1286I GDGCHC 1 cut(s) 325
Bsp1407I TGTACA 4 cut(s) 577, 616, 655, 694
Bsp143I GATC 2 cut(s) 183, 370
BspANI GGCC 2 cut(s) 1201, 1235
BspCNI CTCAG 4 cut(s) 88, 439, 1216, 1250
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 3 cut(s) 52, 486, 1514
BspQI GCTCTTC 2 cut(s) 1277, 1463
BspT104I TTCGAA 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 4 cut(s) 577, 616, 655, 694
BsrI ACTGG 5 cut(s) 95, 232, 290, 323, 743
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 218, 1250
BssMI GATC 2 cut(s) 183, 370
BssNI GRCGYC 1 cut(s) 1504
BssSI CACGAG 1 cut(s) 597
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
Bst4CI ACNGT 3 cut(s) 297, 513, 1451
Bst6I CTCTTC 5 cut(s) 915, 1277, 1316, 1344, 1463
BstACI GRCGYC 1 cut(s) 1504
BstAUI TGTACA 4 cut(s) 577, 616, 655, 694
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 5 cut(s) 62, 215, 414, 838, 1528
BstDEI CTNAG 6 cut(s) 75, 447, 1165, 1203, 1237, 1264
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 2 cut(s) 111, 1419
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 2 cut(s) 193, 256
BstKTI GATC 2 cut(s) 186, 373
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 183, 370
BstMCI CGRYCG 2 cut(s) 373, 512
BstMWI GCNNNNNNNGC 6 cut(s) 54, 57, 140, 352, 458, 1532
BstNI CCWGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
BstNSI RCATGY 4 cut(s) 617, 680, 1073, 1530
BstPI GGTNACC 1 cut(s) 127
BstSCI CCNGG 8 cut(s) 114, 769, 975, 1249, 1515, 1530, 1557, 1575
BstSFI CTRYAG 2 cut(s) 864, 1032
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 7 cut(s) 69, 243, 532, 1067, 1148, 1247, 1444
BstV2I GAAGAC 1 cut(s) 1553
BstXI CCANNNNNNTGG 1 cut(s) 41
BsuI GTATCC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 1201, 1235
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 2 cut(s) 111, 1419
BtsI GCAGTG 1 cut(s) 1409
BtsIMutI CAGTG 2 cut(s) 283, 1409
Cac8I GCNNGC 5 cut(s) 62, 215, 414, 838, 1528
CfoI GCGC 2 cut(s) 193, 256
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 4 cut(s) 93, 229, 1199, 1513
CseI GACGC 1 cut(s) 1493
CsiI ACCWGGT 2 cut(s) 1515, 1557
Csp6I GTAC 7 cut(s) 235, 316, 578, 617, 656, 695, 1338
CviQI GTAC 7 cut(s) 235, 316, 578, 617, 656, 695, 1338
DdeI CTNAG 6 cut(s) 75, 447, 1165, 1203, 1237, 1264
DpnI GATC 2 cut(s) 185, 372
DpnII GATC 2 cut(s) 183, 370
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 5 cut(s) 915, 1277, 1316, 1344, 1463
EarI CTCTTC 5 cut(s) 915, 1277, 1316, 1344, 1463
EciI GGCGGA 1 cut(s) 776
Eco147I AGGCCT 1 cut(s) 1235
Eco24I GRGCYC 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 3 cut(s) 93, 229, 1513
Eco57I CTGAAG 1 cut(s) 1340
Eco91I GGTNACC 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 1199
EcoO65I GGTNACC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 289
EcoRII CCWGG 8 cut(s) 114, 769, 975, 1249, 1515, 1530, 1557, 1575
EcoT38I GRGCYC 1 cut(s) 325
FaqI GGGAC 1 cut(s) 1526
FokI GGATG 2 cut(s) 98, 1406
FriOI GRGCYC 1 cut(s) 325
FspBI CTAG 1 cut(s) 1085
GlaI GCGC 2 cut(s) 192, 255
GsaI CCCAGC 1 cut(s) 1216
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 2 cut(s) 1201, 1235
HapII CCGG 6 cut(s) 23, 54, 61, 86, 151, 548
HgaI GACGC 1 cut(s) 1493
HhaI GCGC 2 cut(s) 193, 256
Hin1I GRCGYC 1 cut(s) 1504
Hin6I GCGC 2 cut(s) 191, 254
HinP1I GCGC 2 cut(s) 191, 254
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 8 cut(s) 418, 491, 532, 595, 703, 923, 1303, 1549
HpaII CCGG 6 cut(s) 23, 54, 61, 86, 151, 548
HphI GGTGA 9 cut(s) 23, 121, 130, 452, 896, 1037, 1118, 1228, 1426
Hpy166II GTNNAC 2 cut(s) 121, 516
Hpy188I TCNGA 6 cut(s) 427, 594, 1206, 1240, 1308, 1320
Hpy188III TCNNGA 5 cut(s) 172, 227, 300, 326, 374
Hpy8I GTNNAC 2 cut(s) 121, 516
Hpy99I CGWCG 2 cut(s) 140, 191
HpyAV CCTTC 7 cut(s) 178, 400, 431, 809, 938, 1016, 1190
HpyCH4III ACNGT 3 cut(s) 297, 513, 1451
HpyCH4IV ACGT 2 cut(s) 456, 1582
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 57, 140, 352, 458, 1532
HpyF3I CTNAG 6 cut(s) 75, 447, 1165, 1203, 1237, 1264
HpySE526I ACGT 2 cut(s) 456, 1582
Hsp92I GRCGYC 1 cut(s) 1504
HspAI GCGC 2 cut(s) 191, 254
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 183, 370
LguI GCTCTTC 2 cut(s) 1277, 1463
LmnI GCTCC 2 cut(s) 56, 264
Lsp1109I GCAGC 7 cut(s) 69, 243, 532, 1067, 1148, 1247, 1444
LweI GCATC 1 cut(s) 1159
MabI ACCWGGT 2 cut(s) 1515, 1557
MaeI CTAG 1 cut(s) 1085
MaeII ACGT 2 cut(s) 456, 1582
MaeIII GTNAC 2 cut(s) 127, 1432
MalI GATC 2 cut(s) 185, 372
MbiI CCGCTC 1 cut(s) 206
MboI GATC 2 cut(s) 183, 370
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 4 cut(s) 289, 537, 933, 1092
MlyI GAGTC 7 cut(s) 500, 541, 589, 697, 932, 1297, 1543
MmeI TCCRAC 1 cut(s) 405
MroNI GCCGGC 1 cut(s) 60
MroXI GAANNNNTTC 4 cut(s) 70, 158, 1092, 1272
MseI TTAA 3 cut(s) 567, 936, 1554
MslI CAYNNNNRTG 5 cut(s) 39, 116, 636, 1277, 1391
MspI CCGG 6 cut(s) 23, 54, 61, 86, 151, 548
MspR9I CCNGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
Mva1269I GAATGC 1 cut(s) 1447
MvaI CCWGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 6 cut(s) 54, 57, 140, 352, 458, 1532
NaeI GCCGGC 1 cut(s) 62
NdeII GATC 2 cut(s) 183, 370
NgoMIV GCCGGC 1 cut(s) 60
NlaIV GGNNCC 3 cut(s) 52, 486, 1514
NmuCI GTSAC 2 cut(s) 127, 1432
NspI RCATGY 4 cut(s) 617, 680, 1073, 1530
NspV TTCGAA 1 cut(s) 384
PaeI GCATGC 1 cut(s) 1530
PceI AGGCCT 1 cut(s) 1235
PciSI GCTCTTC 2 cut(s) 1277, 1463
PcsI WCGNNNNNNNCGW 1 cut(s) 712
PctI GAATGC 1 cut(s) 1447
PdiI GCCGGC 1 cut(s) 62
PdmI GAANNNNTTC 4 cut(s) 70, 158, 1092, 1272
PfeI GAWTC 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 1575
Ple19I CGATCG 1 cut(s) 373
PleI GAGTC 7 cut(s) 499, 540, 589, 697, 931, 1297, 1543
PpsI GAGTC 7 cut(s) 499, 540, 589, 697, 931, 1297, 1543
PshBI ATTAAT 1 cut(s) 936
Psp6I CCWGG 8 cut(s) 114, 769, 975, 1249, 1515, 1530, 1557, 1575
PspEI GGTNACC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 1212
PspGI CCWGG 8 cut(s) 114, 769, 975, 1249, 1515, 1530, 1557, 1575
PspN4I GGNNCC 3 cut(s) 52, 486, 1514
PspPI GGNCC 4 cut(s) 93, 229, 1199, 1513
PsrI GAACNNNNNNTAC 2 cut(s) 729, 761
PvuI CGATCG 1 cut(s) 373
RsaI GTAC 7 cut(s) 236, 317, 579, 618, 657, 696, 1339
RsaNI GTAC 7 cut(s) 235, 316, 578, 617, 656, 695, 1338
RseI CAYNNNNRTG 5 cut(s) 39, 116, 636, 1277, 1391
SapI GCTCTTC 2 cut(s) 1277, 1463
SaqAI TTAA 3 cut(s) 567, 936, 1554
Sau3AI GATC 2 cut(s) 183, 370
Sau96I GGNCC 4 cut(s) 93, 229, 1199, 1513
ScaI AGTACT 1 cut(s) 1339
SchI GAGTC 7 cut(s) 500, 541, 589, 697, 932, 1297, 1543
ScrFI CCNGG 8 cut(s) 116, 771, 977, 1251, 1517, 1532, 1559, 1577
SduI GDGCHC 1 cut(s) 325
SexAI ACCWGGT 2 cut(s) 1515, 1557
SfaNI GCATC 1 cut(s) 1159
SfcI CTRYAG 2 cut(s) 864, 1032
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 3 cut(s) 93, 229, 1513
SmiMI CAYNNNNRTG 5 cut(s) 39, 116, 636, 1277, 1391
SphI GCATGC 1 cut(s) 1530
Sse9I AATT 4 cut(s) 289, 537, 933, 1092
SseBI AGGCCT 1 cut(s) 1235
SspMI CTAG 1 cut(s) 1085
StuI AGGCCT 1 cut(s) 1235
StyD4I CCNGG 8 cut(s) 114, 769, 975, 1249, 1515, 1530, 1557, 1575
TaaI ACNGT 3 cut(s) 297, 513, 1451
TaiI ACGT 2 cut(s) 459, 1585
TaqI TCGA 5 cut(s) 138, 279, 299, 369, 384
TaqII GACCGA 2 cut(s) 110, 210
TasI AATT 4 cut(s) 289, 537, 933, 1092
TatI WGTACW 5 cut(s) 577, 616, 655, 694, 1337
TauI GCSGC 5 cut(s) 48, 51, 243, 399, 644
TfiI GAWTC 1 cut(s) 418
Tru1I TTAA 3 cut(s) 567, 936, 1554
Tru9I TTAA 3 cut(s) 567, 936, 1554
TscAI CASTG 2 cut(s) 290, 1409
TseFI GTSAC 2 cut(s) 127, 1432
TseI GCWGC 7 cut(s) 57, 256, 520, 1080, 1161, 1260, 1457
Tsp45I GTSAC 2 cut(s) 127, 1432
TspDTI ATGAA 7 cut(s) 17, 480, 486, 1295, 1409, 1490, 1553
TspGWI ACGGA 3 cut(s) 116, 446, 1412
TspRI CASTG 2 cut(s) 290, 1409
VpaK11BI GGWCC 3 cut(s) 93, 229, 1513
VspI ATTAAT 1 cut(s) 936
XapI RAATTY 1 cut(s) 289
XceI RCATGY 4 cut(s) 617, 680, 1073, 1530
XmnI GAANNNNTTC 4 cut(s) 70, 158, 1092, 1272
XspI CTAG 1 cut(s) 1085
ZrmI AGTACT 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.