Rorug06G0339900
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013075
Physical Location & Seq
Forward (+)
49102245 .. 49104108
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0339900.1

Sequence Viewer

Length: 1038 bp
ATGACGGGTCTTTTCGGGAACCGTTTCTTCACAAGAATCTTAAAGAAAGCAACATTCTATGCGATCAAAGGAGGTCGCAGAAGTCCAGAGAAGCAAAAGGAAATTAGGGACTGGTCCGATCTCCCTTCTGAACTTCTTTCACTCATAGCAGAACGTGCAGGCCTATTCGCGCTTCAGAGTTTCCATCGTGTTTGTAAGGCTTGGAACTCTGCTTCTTCTGCAGCTTTACCTCAGATACTTGAGACAGAACTAAACCAAGGACCTTGGTTTTTACTATATGATGATAAAAGTCCTAAGTGCAAGGTGCTAACTGGAAGTGGCAAGAAGTTGATAATGAGTCGCCCAGAACTGGATAGAACAACTTGCCTTGCAACATACCAAGGATGGCTTCTTCTGTTCCAACAAGGATGTGGTTCCATGTTCTTCTTTCACCTTTTCTCTCGTCGCAGAATAGACCTTCCACAGTTCCCAGACTCGGAACTCACTGATCATGTTGCAGCAGTTTCATGTTCTCCAACGTCTCAGGATTGTATGGTTTGTGTTATTAGTCGTAGCAATGATGCTGAATTGGAAGCCAAGGTACTATACCTTGGAGAAGACCAGGCATGGACAAAACTCAAGTATTCTCGTTCCCGAGTTTACACTGGTACAATCAAATTTGCTGTATATCACACTGGAATATTCTGCTTTTTCGACCATAGAAATGATAGAATTCTCACCCTATCTACTGAAAATCGAGCTCACAACTGGAGTGTCATTAACTTAATATTCTCCCCGAAAAATCAGTCGAGACCAGGAACATTATTGTTTGACAGGGGTGAGCTGAAGAAAAAGTTCGATGACATGAAGAAGAAGATGGGCTTGACAAAAGGTGTTTCGATTTCTACTTGTGGCACAATAACACTATCTGAAGGCTTGCCCAAGTTTATTTTTAATGAGATCATTAGTGATCATGCGGAAGAATCCAAGAGAAACCATTTCAAAGGGGTATGGATGCAACCAAGACTTAAACAAAACCCATCAACGTACAAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

345

Amino Acids

39.5

Weight (kDa)

9.52

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 113 - 244 2.1e-15 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 170
AciI CCGC 1 cut(s) 956
AcsI RAATTY 2 cut(s) 656, 711
AcuI CTGAAG 3 cut(s) 158, 845, 930
AfaI GTAC 3 cut(s) 582, 649, 1028
AfiI CCNNNNNNNGG 2 cut(s) 349, 475
AgsI TTSAA 1 cut(s) 982
AjnI CCWGG 2 cut(s) 600, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 372, 404
AluBI AGCT 3 cut(s) 224, 740, 823
AluI AGCT 3 cut(s) 224, 740, 823
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 3 cut(s) 236, 525, 784
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 221, 497
ApoI RAATTY 2 cut(s) 656, 711
ArsI GACNNNNNNTTYG 2 cut(s) 770, 802
Asp700I GAANNNNTTC 2 cut(s) 23, 833
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 114, 260
AsuHPI GGTGA 3 cut(s) 422, 709, 830
AvaI CYCGRG 1 cut(s) 633
AvaII GGWCC 2 cut(s) 114, 260
BanII GRGCYC 1 cut(s) 742
BarI GAAGNNNNNNTAC 2 cut(s) 564, 596
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 742
BbvI GCAGC 2 cut(s) 233, 509
BccI CCATC 4 cut(s) 192, 378, 850, 1027
BciT130I CCWGG 2 cut(s) 602, 795
BclI TGATCA 2 cut(s) 487, 949
BcoDI GTCTC 3 cut(s) 236, 525, 784
BfmI CTRYAG 1 cut(s) 219
BisI GCNGC 2 cut(s) 222, 498
BlsI GCNGC 2 cut(s) 223, 499
Bme1390I CCNGG 2 cut(s) 602, 795
Bme18I GGWCC 2 cut(s) 114, 260
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 2 cut(s) 114, 260
BmiI GGNNCC 2 cut(s) 20, 415
BmrFI CCNGG 2 cut(s) 602, 795
BmsI GCATC 2 cut(s) 550, 984
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 769
BpuEI CTTGAG 2 cut(s) 260, 602
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 5 cut(s) 256, 263, 379, 576, 589
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 475
Bse1I ACTGG 6 cut(s) 116, 316, 354, 649, 679, 752
Bse3DI GCAATG 1 cut(s) 562
BseBI CCWGG 2 cut(s) 602, 795
BseDI CCNNGG 5 cut(s) 256, 263, 379, 576, 589
BseGI GGATG 3 cut(s) 389, 413, 999
BseLI CCNNNNNNNGG 2 cut(s) 349, 475
BseMI GCAATG 1 cut(s) 562
BseMII CTCAG 2 cut(s) 245, 536
BseNI ACTGG 6 cut(s) 116, 316, 354, 649, 679, 752
BseXI GCAGC 2 cut(s) 233, 509
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 349, 475
BsmAI GTCTC 3 cut(s) 236, 525, 784
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 784
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 1 cut(s) 742
Bsp143I GATC 5 cut(s) 63, 118, 487, 939, 949
BspACI CCGC 1 cut(s) 956
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 244, 535
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 20, 415
BspMAI CTGCAG 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 784
BsrDI GCAATG 1 cut(s) 562
BsrI ACTGG 6 cut(s) 116, 316, 354, 649, 679, 752
BssECI CCNNGG 5 cut(s) 256, 263, 379, 576, 589
BssMI GATC 5 cut(s) 63, 118, 487, 939, 949
BssT1I CCWWGG 5 cut(s) 256, 263, 379, 576, 589
Bst2UI CCWGG 2 cut(s) 602, 795
Bst4CI ACNGT 2 cut(s) 23, 465
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 160, 917
BstDEI CTNAG 3 cut(s) 231, 294, 522
BstF5I GGATG 3 cut(s) 389, 413, 999
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 5 cut(s) 66, 121, 490, 942, 952
BstMAI GTCTC 3 cut(s) 236, 525, 784
BstMBI GATC 5 cut(s) 63, 118, 487, 939, 949
BstMWI GCNNNNNNNGC 2 cut(s) 155, 218
BstNI CCWGG 2 cut(s) 602, 795
BstSCI CCNGG 2 cut(s) 600, 793
BstSFI CTRYAG 1 cut(s) 219
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 233, 509
BstV2I GAAGAC 1 cut(s) 603
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 3 cut(s) 389, 413, 999
BtsIMutI CAGTG 3 cut(s) 483, 642, 672
Cac8I GCNNGC 2 cut(s) 160, 917
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 2 cut(s) 114, 260
Csp6I GTAC 3 cut(s) 581, 648, 1027
CviAII CATG 6 cut(s) 418, 491, 507, 606, 844, 953
CviJI RGCY 9 cut(s) 162, 200, 224, 388, 575, 740, 823, 861, 915
CviKI_1 RGCY 9 cut(s) 162, 200, 224, 388, 575, 740, 823, 861, 915
CviQI GTAC 3 cut(s) 581, 648, 1027
DdeI CTNAG 3 cut(s) 231, 294, 522
DpnI GATC 5 cut(s) 65, 120, 489, 941, 951
DpnII GATC 5 cut(s) 63, 118, 487, 939, 949
Ecl136II GAGCTC 1 cut(s) 740
Eco130I CCWWGG 5 cut(s) 256, 263, 379, 576, 589
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 742
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 2 cut(s) 114, 260
Eco53kI GAGCTC 1 cut(s) 740
Eco57I CTGAAG 3 cut(s) 158, 845, 930
Eco88I CYCGRG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 600, 793
EcoT14I CCWWGG 5 cut(s) 256, 263, 379, 576, 589
EcoT38I GRGCYC 1 cut(s) 742
ErhI CCWWGG 5 cut(s) 256, 263, 379, 576, 589
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 6 cut(s) 421, 494, 510, 609, 847, 956
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 845, 877
FaqI GGGAC 1 cut(s) 122
FatI CATG 6 cut(s) 417, 490, 506, 605, 843, 952
FbaI TGATCA 2 cut(s) 487, 949
Fnu4HI GCNGC 2 cut(s) 222, 498
FokI GGATG 3 cut(s) 396, 420, 1006
FriOI GRGCYC 1 cut(s) 742
Fsp4HI GCNGC 2 cut(s) 222, 498
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 222, 498
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 1 cut(s) 162
HhaI GCGC 1 cut(s) 172
Hin1II CATG 6 cut(s) 421, 494, 510, 609, 847, 956
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 4 cut(s) 36, 337, 473, 962
HphI GGTGA 3 cut(s) 422, 709, 830
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 6 cut(s) 118, 130, 177, 234, 478, 910
Hpy188III TCNNGA 5 cut(s) 16, 86, 524, 633, 789
Hpy8I GTNNAC 1 cut(s) 640
Hpy99I CGWCG 1 cut(s) 447
HpyAV CCTTC 3 cut(s) 135, 467, 905
HpyCH4III ACNGT 2 cut(s) 23, 465
HpyCH4IV ACGT 3 cut(s) 154, 518, 1025
HpyCH4V TGCA 6 cut(s) 158, 221, 300, 371, 497, 997
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 218
HpyF3I CTNAG 3 cut(s) 231, 294, 522
HpySE526I ACGT 3 cut(s) 154, 518, 1025
Hsp92II CATG 6 cut(s) 421, 494, 510, 609, 847, 956
HspAI GCGC 1 cut(s) 170
Ksp22I TGATCA 2 cut(s) 487, 949
Kzo9I GATC 5 cut(s) 63, 118, 487, 939, 949
Lsp1109I GCAGC 2 cut(s) 233, 509
LweI GCATC 2 cut(s) 550, 984
MaeII ACGT 3 cut(s) 154, 518, 1025
MalI GATC 5 cut(s) 65, 120, 489, 941, 951
MboI GATC 5 cut(s) 63, 118, 487, 939, 949
MhlI GDGCHC 1 cut(s) 742
MluCI AATT 4 cut(s) 102, 566, 656, 711
MlyI GAGTC 2 cut(s) 346, 467
MmeI TCCRAC 2 cut(s) 424, 539
MnlI CCTC 2 cut(s) 65, 240
MroXI GAANNNNTTC 2 cut(s) 23, 833
MseI TTAA 5 cut(s) 41, 759, 764, 933, 1008
MslI CAYNNNNRTG 1 cut(s) 702
MspR9I CCNGG 2 cut(s) 602, 795
MvaI CCWGG 2 cut(s) 602, 795
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 155, 218
NdeII GATC 5 cut(s) 63, 118, 487, 939, 949
NlaIII CATG 6 cut(s) 421, 494, 510, 609, 847, 956
NlaIV GGNNCC 2 cut(s) 20, 415
PceI AGGCCT 1 cut(s) 162
PdmI GAANNNNTTC 2 cut(s) 23, 833
PfeI GAWTC 2 cut(s) 36, 962
PkrI GCNGC 2 cut(s) 223, 499
PleI GAGTC 2 cut(s) 345, 467
PpsI GAGTC 2 cut(s) 345, 467
PpuMI RGGWCCY 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 742
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 600, 793
PspGI CCWGG 2 cut(s) 600, 793
PspN4I GGNNCC 2 cut(s) 20, 415
PspPI GGNCC 2 cut(s) 114, 260
PspPPI RGGWCCY 1 cut(s) 260
PstI CTGCAG 1 cut(s) 223
RsaI GTAC 3 cut(s) 582, 649, 1028
RsaNI GTAC 3 cut(s) 581, 648, 1027
RseI CAYNNNNRTG 1 cut(s) 702
SacI GAGCTC 1 cut(s) 742
SaqAI TTAA 5 cut(s) 41, 759, 764, 933, 1008
SatI GCNGC 2 cut(s) 222, 498
Sau3AI GATC 5 cut(s) 63, 118, 487, 939, 949
Sau96I GGNCC 2 cut(s) 114, 260
SchI GAGTC 2 cut(s) 346, 467
ScrFI CCNGG 2 cut(s) 602, 795
SduI GDGCHC 1 cut(s) 742
SfaNI GCATC 2 cut(s) 550, 984
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 2 cut(s) 114, 260
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 2 cut(s) 239, 617
SmoI CTYRAG 2 cut(s) 239, 617
Sse9I AATT 4 cut(s) 102, 566, 656, 711
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 1 cut(s) 956
SspI AATATT 2 cut(s) 681, 768
SstI GAGCTC 1 cut(s) 742
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 600, 793
StyI CCWWGG 5 cut(s) 256, 263, 379, 576, 589
TaaI ACNGT 2 cut(s) 23, 465
TaiI ACGT 3 cut(s) 157, 521, 1028
TaqI TCGA 5 cut(s) 693, 736, 788, 837, 878
TasI AATT 4 cut(s) 102, 566, 656, 711
TfiI GAWTC 2 cut(s) 36, 962
Tru1I TTAA 5 cut(s) 41, 759, 764, 933, 1008
Tru9I TTAA 5 cut(s) 41, 759, 764, 933, 1008
TscAI CASTG 3 cut(s) 490, 649, 679
TseI GCWGC 2 cut(s) 221, 497
TspDTI ATGAA 2 cut(s) 495, 860
TspRI CASTG 3 cut(s) 490, 649, 679
VpaK11BI GGWCC 2 cut(s) 114, 260
XapI RAATTY 2 cut(s) 656, 711
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 2 cut(s) 23, 833
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.