Prupe.1G456500_v2.0.a1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0013075
Physical Location & Seq
Forward (+)
38280917 .. 38283617
2701 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G456500.1

Sequence Viewer

Length: 1008 bp
ATGAAAGTACAAGGAAGCCAATCCGAGCTTGACCGATCGCAGTGCGGTTCGAGCAGTAGGCGCAGCACGCGTTCGCAAGTAGCACCAGACTGGAATTCAACAGACGAGCTCCTTCTGGTGAACGAGATCGCTGCTGTGGAAGCCGATTGTCTGAAAGCATTGTCTTCATTTCAGAAATGGAAGATCATATCTCAAAACTGCTCTGCTTTGGGCGTCCCGCGGACTTTGGATCAGTATCGCAGAAAATGGGACGCTTTGTTTCTCCAGTACAAGAGTATCAAGCAGTGGGAGTCAGCGTCTAGAGGCGGTGCTTCGTACTGGGTTTTGGAAATTGGAAGGAGGAAGCAGAAGGGGTTGCCTGAGAATTTTGATAATGAGTTGTTCAGAGCCATTGATAATCTTGTGAGGGTTCGGGGGAACCAATCGGATACGGACCCAGATAGTGATCCAGAAGCTGAGATTGATGCTGAGGCTGATGTGCCTGATGTTGTTGCAGAGCCAGAGTCCAAGAGGAGAAGACGCCGATCAACACATCAGAAAAGCTGCTCAATAGAAAATTCATTAGAAGATGTAAGGTGGAAAAGCCTGAAGAAACCCCGGGTAGAAGAAAAACCTGAAGAAACCCATGCAGAAGAAAAACCTCAAGAAACCCACGCAGAAGAAAAACCTGTGGGAAGCTGCTTAGAAGTAATTCCTCAGAAGAGCCTGGCAGAACAGAAGTCTCAAAAAAGCTGTGCGAAGAAACATAAAAATAGTCAAATAAAAGAGAAGGCTATCAGCATTGAAGAACAGGAGCAAATTGCGGTTATGCAATTGCATGAAAATGTAGAACTAATCCAGGCTATTGTTAATGAGAATGCAGATCATGAGGCTGCCGCCGATGTGAAAAGCACCGGGGACCCTCAAACTGATCTTGTTAGACGCCAAGGAGACCAGGTTATTGCATGTCTGGGAGATATTGTGAAGACTCTTGACCAGCTCCGTCAGCTTGTCCAGGAATGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

336

Amino Acids

37.93

Weight (kDa)

5.44

Isoelectric Point (pI)

65.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013075)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31270
fragaria_vesca FvH4_2g36510
malus_domestica MD08G1124900.v1.1 MD15G1104200.v1.1
prunus_persica Prupe.1G456500_v2.0.a1
pyrus_communis pycom08g10350 pycom15g09500
rosa_chinensis RchiOBHm_Chr6g0305361
rosa_laevigata RLG00000010896
rosa_multiflora Rmu_sc0020930.1_g000001 Rmu_ssc0000148.1_g000005
rosa_roxburghii Rroxscaffold_7G00162870
rosa_rugosa Rorug06G0339900
rosa_samantha Rh6AG451600 Rh6BG449900 Rh6CG465700 Rh6DG452400
rosa_wichuraiana Rw6G039350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 70, 220
AciI CCGC 6 cut(s) 45, 218, 220, 306, 803, 876
AclWI GGATC 2 cut(s) 237, 440
AcsI RAATTY 3 cut(s) 94, 364, 556
AcuI CTGAAG 2 cut(s) 608, 636
AcyI GRCGYC 3 cut(s) 213, 520, 922
AfaI GTAC 3 cut(s) 9, 269, 317
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 99, 785
AjnI CCWGG 4 cut(s) 705, 837, 933, 993
AluBI AGCT 8 cut(s) 28, 109, 455, 543, 678, 732, 979, 988
AluI AGCT 8 cut(s) 28, 109, 455, 543, 678, 732, 979, 988
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 2 cut(s) 726, 924
AlwI GGATC 2 cut(s) 237, 440
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 597
ApeKI GCWGC 5 cut(s) 63, 131, 543, 678, 872
ApoI RAATTY 3 cut(s) 94, 364, 556
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 433, 898
AsuC2I CCSGG 3 cut(s) 598, 599, 895
AsuHPI GGTGA 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 2 cut(s) 433, 898
BaeI ACNNNNGTAYC 2 cut(s) 259, 292
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 3 cut(s) 156, 523, 971
Bbv12I GWGCWC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 5 cut(s) 75, 118, 530, 665, 859
BcgI CGANNNNNNTGC 4 cut(s) 24, 58, 113, 147
BciT130I CCWGG 4 cut(s) 707, 839, 935, 995
BciVI GTATCC 1 cut(s) 421
BcnI CCSGG 3 cut(s) 598, 599, 895
BcoDI GTCTC 2 cut(s) 726, 924
BfaI CTAG 1 cut(s) 300
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 6 cut(s) 64, 132, 544, 679, 873, 876
BlsI GCNGC 6 cut(s) 65, 133, 545, 680, 874, 877
Bme1390I CCNGG 7 cut(s) 598, 599, 707, 839, 895, 935, 995
Bme18I GGWCC 2 cut(s) 433, 898
BmeT110I CYCGRG 1 cut(s) 597
BmgT120I GGNCC 2 cut(s) 433, 898
BmiI GGNNCC 4 cut(s) 419, 435, 899, 900
BmrFI CCNGG 7 cut(s) 598, 599, 707, 839, 895, 935, 995
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 3 cut(s) 156, 523, 971
BpmI CTGGAG 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 468
BpuEI CTTGAG 1 cut(s) 627
BpuMI CCSGG 3 cut(s) 598, 599, 895
BsaBI GATNNNNATC 2 cut(s) 234, 444
BsaHI GRCGYC 3 cut(s) 213, 520, 922
BsaI GGTCTC 1 cut(s) 924
BsaJI CCNNGG 5 cut(s) 218, 596, 597, 894, 925
BsaXI ACNNNNNCTCC 6 cut(s) 281, 311, 921, 945, 951, 975
Bse1I ACTGG 3 cut(s) 95, 265, 323
Bse8I GATNNNNATC 2 cut(s) 234, 444
BseBI CCWGG 4 cut(s) 707, 839, 935, 995
BseDI CCNNGG 5 cut(s) 218, 596, 597, 894, 925
BseJI GATNNNNATC 2 cut(s) 234, 444
BseMII CTCAG 4 cut(s) 351, 447, 459, 710
BseNI ACTGG 3 cut(s) 95, 265, 323
BseRI GAGGAG 1 cut(s) 526
BseXI GCAGC 5 cut(s) 75, 118, 530, 665, 859
Bsh1236I CGCG 2 cut(s) 70, 220
Bsh1285I CGRYCG 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 2 cut(s) 598, 894
BslFI GGGAC 3 cut(s) 200, 263, 911
BsmAI GTCTC 2 cut(s) 726, 924
BsmFI GGGAC 3 cut(s) 200, 263, 911
BsmI GAATGC 1 cut(s) 862
Bso31I GGTCTC 1 cut(s) 924
BsoBI CYCGRG 1 cut(s) 597
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
BspACI CCGC 6 cut(s) 45, 218, 220, 306, 803, 876
BspCNI CTCAG 4 cut(s) 352, 448, 460, 709
BspFNI CGCG 2 cut(s) 70, 220
BspHI TCATGA 1 cut(s) 865
BspLI GGNNCC 4 cut(s) 419, 435, 899, 900
BspPI GGATC 2 cut(s) 237, 440
BspQI GCTCTTC 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 924
BsrI ACTGG 3 cut(s) 95, 265, 323
BssECI CCNNGG 5 cut(s) 218, 596, 597, 894, 925
BssMI GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
BssNI GRCGYC 3 cut(s) 213, 520, 922
BssT1I CCWWGG 1 cut(s) 925
Bst2UI CCWGG 4 cut(s) 707, 839, 935, 995
Bst6I CTCTTC 1 cut(s) 695
BstACI GRCGYC 3 cut(s) 213, 520, 922
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 5 cut(s) 360, 456, 468, 682, 696
BstDSI CCRYGG 1 cut(s) 218
BstFNI CGCG 2 cut(s) 70, 220
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 8 cut(s) 38, 129, 186, 232, 448, 527, 865, 913
BstMAI GTCTC 2 cut(s) 726, 924
BstMBI GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 5 cut(s) 51, 60, 67, 140, 985
BstNI CCWGG 4 cut(s) 707, 839, 935, 995
BstNSI RCATGY 1 cut(s) 948
BstSCI CCNGG 7 cut(s) 596, 597, 705, 837, 893, 933, 993
BstUI CGCG 2 cut(s) 70, 220
BstV1I GCAGC 5 cut(s) 75, 118, 530, 665, 859
BstV2I GAAGAC 3 cut(s) 156, 523, 971
BsuI GTATCC 1 cut(s) 421
BtgI CCRYGG 1 cut(s) 218
BtsI GCAGTG 2 cut(s) 47, 290
BtsIMutI CAGTG 2 cut(s) 47, 290
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 865
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 2 cut(s) 433, 898
Cfr42I CCGCGG 1 cut(s) 221
Cfr9I CCCGGG 1 cut(s) 597
CseI GACGC 5 cut(s) 202, 260, 285, 528, 930
CsiI ACCWGGT 1 cut(s) 933
Csp6I GTAC 3 cut(s) 8, 268, 316
CviAII CATG 4 cut(s) 626, 818, 866, 945
CviQI GTAC 3 cut(s) 8, 268, 316
DdeI CTNAG 5 cut(s) 360, 456, 468, 682, 696
DpnI GATC 8 cut(s) 37, 128, 185, 231, 447, 526, 864, 912
DpnII GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
Eam1104I CTCTTC 1 cut(s) 695
EarI CTCTTC 1 cut(s) 695
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 925
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 924
Eco47I GGWCC 2 cut(s) 433, 898
Eco53kI GAGCTC 1 cut(s) 109
Eco57I CTGAAG 2 cut(s) 608, 636
Eco88I CYCGRG 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 898
EcoRI GAATTC 1 cut(s) 94
EcoRII CCWGG 4 cut(s) 705, 837, 933, 993
EcoT14I CCWWGG 1 cut(s) 925
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 925
FaeI CATG 4 cut(s) 629, 821, 869, 948
FaiI YATR 7 cut(s) 188, 627, 747, 809, 819, 867, 946
FaqI GGGAC 3 cut(s) 200, 263, 911
FatI CATG 4 cut(s) 625, 817, 865, 944
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 6 cut(s) 64, 132, 544, 679, 873, 876
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 6 cut(s) 64, 132, 544, 679, 873, 876
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 62
GluI GCNGC 6 cut(s) 64, 132, 544, 679, 873, 876
GsuI CTGGAG 1 cut(s) 248
HapII CCGG 2 cut(s) 598, 894
HgaI GACGC 5 cut(s) 202, 260, 285, 528, 930
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 3 cut(s) 213, 520, 922
Hin1II CATG 4 cut(s) 629, 821, 869, 948
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 3 cut(s) 290, 503, 967
HpaII CCGG 2 cut(s) 598, 894
HphI GGTGA 1 cut(s) 130
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 7 cut(s) 25, 153, 174, 386, 427, 537, 699
Hpy188III TCNNGA 5 cut(s) 300, 449, 644, 866, 971
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 4 cut(s) 122, 330, 343, 763
HpyCH4V TGCA 6 cut(s) 494, 629, 811, 817, 860, 944
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 60, 67, 140, 985
HpyF3I CTNAG 5 cut(s) 360, 456, 468, 682, 696
Hsp92I GRCGYC 3 cut(s) 213, 520, 922
Hsp92II CATG 4 cut(s) 629, 821, 869, 948
HspAI GCGC 1 cut(s) 61
KflI GGGWCCC 1 cut(s) 898
KspI CCGCGG 1 cut(s) 221
Kzo9I GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
LguI GCTCTTC 1 cut(s) 695
LmnI GCTCC 3 cut(s) 114, 793, 984
Lsp1109I GCAGC 5 cut(s) 75, 118, 530, 665, 859
LweI GCATC 1 cut(s) 454
MabI ACCWGGT 1 cut(s) 933
MaeI CTAG 1 cut(s) 300
MalI GATC 8 cut(s) 37, 128, 185, 231, 447, 526, 864, 912
MboI GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
MfeI CAATTG 1 cut(s) 812
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 7 cut(s) 94, 330, 364, 556, 690, 798, 812
MluI ACGCGT 1 cut(s) 68
MlyI GAGTC 3 cut(s) 299, 512, 961
MnlI CCTC 9 cut(s) 296, 333, 399, 463, 504, 651, 705, 862, 912
MroXI GAANNNNTTC 1 cut(s) 690
MseI TTAA 1 cut(s) 849
MslI CAYNNNNRTG 1 cut(s) 822
MspA1I CMGCKG 1 cut(s) 220
MspI CCGG 2 cut(s) 598, 894
MspR9I CCNGG 7 cut(s) 598, 599, 707, 839, 895, 935, 995
MunI CAATTG 1 cut(s) 812
Mva1269I GAATGC 1 cut(s) 862
MvaI CCWGG 4 cut(s) 707, 839, 935, 995
MvnI CGCG 2 cut(s) 70, 220
MwoI GCNNNNNNNGC 5 cut(s) 51, 60, 67, 140, 985
NciI CCSGG 3 cut(s) 598, 599, 895
NdeII GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
NlaIII CATG 4 cut(s) 629, 821, 869, 948
NlaIV GGNNCC 4 cut(s) 419, 435, 899, 900
NspI RCATGY 1 cut(s) 948
PagI TCATGA 1 cut(s) 865
PciSI GCTCTTC 1 cut(s) 695
PctI GAATGC 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 690
PfoI TCCNGGA 1 cut(s) 993
PkrI GCNGC 6 cut(s) 65, 133, 545, 680, 874, 877
Ple19I CGATCG 1 cut(s) 38
PleI GAGTC 3 cut(s) 298, 511, 961
PpsI GAGTC 3 cut(s) 298, 511, 961
PpuMI RGGWCCY 1 cut(s) 898
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 4 cut(s) 705, 837, 933, 993
PspGI CCWGG 4 cut(s) 705, 837, 933, 993
PspN4I GGNNCC 4 cut(s) 419, 435, 899, 900
PspPI GGNCC 2 cut(s) 433, 898
PspPPI RGGWCCY 1 cut(s) 898
PstNI CAGNNNCTG 1 cut(s) 455
PvuI CGATCG 1 cut(s) 38
RsaI GTAC 3 cut(s) 9, 269, 317
RsaNI GTAC 3 cut(s) 8, 268, 316
RseI CAYNNNNRTG 1 cut(s) 822
SacI GAGCTC 1 cut(s) 111
SacII CCGCGG 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 695
SaqAI TTAA 1 cut(s) 849
SatI GCNGC 6 cut(s) 64, 132, 544, 679, 873, 876
Sau3AI GATC 8 cut(s) 35, 126, 183, 229, 445, 524, 862, 910
Sau96I GGNCC 2 cut(s) 433, 898
SchI GAGTC 3 cut(s) 299, 512, 961
ScrFI CCNGG 7 cut(s) 598, 599, 707, 839, 895, 935, 995
SduI GDGCHC 1 cut(s) 111
SexAI ACCWGGT 1 cut(s) 933
SfaNI GCATC 1 cut(s) 454
Sfr303I CCGCGG 1 cut(s) 221
SgrBI CCGCGG 1 cut(s) 221
SinI GGWCC 2 cut(s) 433, 898
SmaI CCCGGG 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 822
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 7 cut(s) 94, 330, 364, 556, 690, 798, 812
SsiI CCGC 6 cut(s) 45, 218, 220, 306, 803, 876
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 7 cut(s) 596, 597, 705, 837, 893, 933, 993
StyI CCWWGG 1 cut(s) 925
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 48
TasI AATT 7 cut(s) 94, 330, 364, 556, 690, 798, 812
TatI WGTACW 2 cut(s) 7, 267
TauI GCSGC 1 cut(s) 878
Tru1I TTAA 1 cut(s) 849
Tru9I TTAA 1 cut(s) 849
TscAI CASTG 2 cut(s) 47, 290
TseI GCWGC 5 cut(s) 63, 131, 543, 678, 872
TspDTI ATGAA 4 cut(s) 17, 156, 549, 834
TspGWI ACGGA 2 cut(s) 446, 971
TspMI CCCGGG 1 cut(s) 597
TspRI CASTG 2 cut(s) 47, 290
VpaK11BI GGWCC 2 cut(s) 433, 898
XapI RAATTY 3 cut(s) 94, 364, 556
XbaI TCTAGA 1 cut(s) 299
XceI RCATGY 1 cut(s) 948
XmaI CCCGGG 1 cut(s) 597
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.