Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Reverse (-)

15314867 .. 15317160

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G31600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGGTTCAAGCTGAAATGGAGCCTACCTCGTCCATTAGTTTAGTCGCAGCTGTTTCATATGGCATTGCTTCAATGGCAATGGTTTTTATCAACAAGGCTGTGATTATGCAGTATCCACATTCCATGACTGTTCTTACTCTTCAGCAATTGGCTACTTCTTTGCTTATACACTTTGGTAGACGAATGGGATACACAAGAGCTAAAGGAATTGATATGGCTACGGCCAAAAAGCTTCTTCCGGTTTCTATCTTCTACAATGCTAATGTTGCATTTGCTCTTGCAAGTTTGAAAGGAGTAAACATTCCAATGTATATCGCCATTAAGAGACTCACTCCACTTGCTGTTTTGATTTCTGGGGTTTTGTTTGGTAAAGGCAAACCAACAACTCAGGTTGCTCTATCTGTACTACTTACCGCTGCAGGCTGTGTAATTGCAGCTCTTGGTGATTTTTCTTTTGATCTTTTTGGGTATGGTTTGGCTTTAACATCTGTCTTTTTCCAGACTATGTACCTTGTGCTGGTGGAGAAGTCTGGTGCAGAAGACGGGCTTTCCTCCATCGAGATAATGTTCTATAACAGCTTCCTTTCTCTCCCATTTTTGTCCATCCTCATCATAGTTACCGGCGAATTCCCAAACTCTCTATCACTATTACTTGCAAAGTGTTCTTATTTGCCGTTCTTGGTGATTCTCATTCTTTCACTGGTTATGGGCATTGTCCTCAACTTCACCATGTTTCTTTGCACCATTGTGAACTCTGCACTAACAACAACCATCGTTGGTGTTCTCAAAGGCGTTGGTTCCACTACGCTCGGTTTTGTCCTCTTGGGTGGTGTTGAAGTACATGCTTTGAACGTGTCCGGTTTAGTGGTCAACACAGCTGGTGGTGTGTGGTACTCATATGCCAAGTACCGACAGAAAAAGGCTAAACCGGCTAAGCTAATGTCTGATTTGGAAGCTCACAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

323

Amino Acids

34.63

Weight (kDa)

9.39

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	23 - 300	7.2e-15	Triose-phosphate Transporter family
UAA	PF08449	30 - 265	4e-07	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	181
AciI	CCGC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	629
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	5 cut(s)	408, 512, 843, 896, 911
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	5 cut(s)	11, 75, 292, 839, 853
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	9 cut(s)	14, 53, 203, 235, 440, 582, 881, 940, 959
AluI	AGCT	9 cut(s)	14, 53, 203, 235, 440, 582, 881, 940, 959
Alw26I	GTCTC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	3 cut(s)	50, 419, 437
ApoI	RAATTY	1 cut(s)	629
AsuHPI	GGTGA	3 cut(s)	458, 697, 721
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	62, 406, 449
BccI	CCATC	3 cut(s)	566, 614, 782
BceAI	ACGGC	2 cut(s)	240, 661
BciVI	GTATCC	2 cut(s)	126, 185
BcoDI	GTCTC	1 cut(s)	322
BfmI	CTRYAG	1 cut(s)	420
BfuI	GTATCC	2 cut(s)	126, 185
BisI	GCNGC	3 cut(s)	51, 420, 438
BlpI	GCTNAGC	1 cut(s)	936
BlsI	GCNGC	3 cut(s)	52, 421, 439
BmiI	GGNNCC	2 cut(s)	24, 802
BpiI	GAAGAC	1 cut(s)	549
BplI	GAGNNNNNCTC	4 cut(s)	14, 46, 319, 351
Bpu1102I	GCTNAGC	1 cut(s)	936
BsaWI	WCCGGW	2 cut(s)	241, 860
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	2 cut(s)	623, 931
Bse1I	ACTGG	1 cut(s)	708
Bse3DI	GCAATG	2 cut(s)	66, 87
BseGI	GGATG	1 cut(s)	606
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	2 cut(s)	66, 87
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	708
BseXI	GCAGC	3 cut(s)	62, 406, 449
BsgI	GTGCAG	2 cut(s)	558, 744
BshFI	GGCC	1 cut(s)	227
BsiSI	CCGG	4 cut(s)	242, 624, 861, 932
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	460
Bsp1720I	GCTNAGC	1 cut(s)	936
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	403
BspLI	GGNNCC	2 cut(s)	24, 802
BspMAI	CTGCAG	1 cut(s)	424
BsrDI	GCAATG	2 cut(s)	66, 87
BsrFI	RCCGGY	2 cut(s)	623, 931
BsrI	ACTGG	1 cut(s)	708
BssAI	RCCGGY	2 cut(s)	623, 931
BssMI	GATC	1 cut(s)	460
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	390, 936
BstF5I	GGATG	1 cut(s)	606
BstKTI	GATC	1 cut(s)	463
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 269, 932
BstNSI	RCATGY	1 cut(s)	848
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	62, 406, 449
BstV2I	GAAGAC	1 cut(s)	549
BsuI	GTATCC	2 cut(s)	126, 185
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	606
BtsIMutI	CAGTG	1 cut(s)	701
Cac8I	GCNNGC	1 cut(s)	424
Cfr10I	RCCGGY	2 cut(s)	623, 931
Csp6I	GTAC	5 cut(s)	407, 511, 842, 895, 910
CviAII	CATG	3 cut(s)	127, 733, 845
CviQI	GTAC	5 cut(s)	407, 511, 842, 895, 910
DdeI	CTNAG	2 cut(s)	390, 936
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	629
FaeI	CATG	3 cut(s)	130, 736, 848
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	3 cut(s)	126, 732, 844
FauNDI	CATATG	2 cut(s)	61, 901
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	51, 420, 438
FokI	GGATG	1 cut(s)	593
Fsp4HI	GCNGC	3 cut(s)	51, 420, 438
GluI	GCNGC	3 cut(s)	51, 420, 438
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	4 cut(s)	242, 624, 861, 932
Hin1II	CATG	3 cut(s)	130, 736, 848
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	330, 688
HpaII	CCGG	4 cut(s)	242, 624, 861, 932
HphI	GGTGA	3 cut(s)	458, 697, 721
Hpy166II	GTNNAC	4 cut(s)	182, 301, 754, 874
Hpy188I	TCNGA	1 cut(s)	949
Hpy188III	TCNNGA	2 cut(s)	502, 562
Hpy8I	GTNNAC	4 cut(s)	182, 301, 754, 874
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	855
HpyCH4V	TGCA	9 cut(s)	112, 272, 284, 422, 437, 539, 659, 744, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 269, 932
HpyF3I	CTNAG	2 cut(s)	390, 936
HpySE526I	ACGT	1 cut(s)	855
Hsp92II	CATG	3 cut(s)	130, 736, 848
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	3 cut(s)	62, 406, 449
MaeII	ACGT	1 cut(s)	855
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	4 cut(s)	134, 230, 244, 554
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	4 cut(s)	149, 210, 432, 629
MlyI	GAGTC	1 cut(s)	324
MnlI	CCTC	5 cut(s)	40, 565, 620, 731, 833
MseI	TTAA	2 cut(s)	324, 485
MslI	CAYNNNNRTG	2 cut(s)	308, 749
MspA1I	CMGCKG	3 cut(s)	53, 419, 881
MspI	CCGG	4 cut(s)	242, 624, 861, 932
MunI	CAATTG	1 cut(s)	149
MwoI	GCNNNNNNNGC	3 cut(s)	77, 269, 932
NdeI	CATATG	2 cut(s)	61, 901
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	3 cut(s)	130, 736, 848
NlaIV	GGNNCC	2 cut(s)	24, 802
NspI	RCATGY	1 cut(s)	848
OliI	CACNNNNGTG	1 cut(s)	749
PfeI	GAWTC	1 cut(s)	688
PkrI	GCNGC	3 cut(s)	52, 421, 439
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	24, 802
PstI	CTGCAG	1 cut(s)	424
PvuII	CAGCTG	2 cut(s)	53, 881
RsaI	GTAC	5 cut(s)	408, 512, 843, 896, 911
RsaNI	GTAC	5 cut(s)	407, 511, 842, 895, 910
RseI	CAYNNNNRTG	2 cut(s)	308, 749
SaqAI	TTAA	2 cut(s)	324, 485
SatI	GCNGC	3 cut(s)	51, 420, 438
Sau3AI	GATC	1 cut(s)	460
SchI	GAGTC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	420
SmiMI	CAYNNNNRTG	2 cut(s)	308, 749
Sse9I	AATT	4 cut(s)	149, 210, 432, 629
SsiI	CCGC	1 cut(s)	417
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	858
TaqI	TCGA	1 cut(s)	561
TasI	AATT	4 cut(s)	149, 210, 432, 629
TatI	WGTACW	2 cut(s)	406, 841
TfiI	GAWTC	1 cut(s)	688
Tru1I	TTAA	2 cut(s)	324, 485
Tru9I	TTAA	2 cut(s)	324, 485
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	3 cut(s)	50, 419, 437
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	708
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.