Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Reverse (-)

63277294 .. 63281647

Gene Structure 4354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G039240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGACACCAGCAAACTAAAAATCCGAGAACGAAGGCCAGAACTGGACTTGGGTATTCCTTCCTCTTTCAGATCTCATCCCGATTCTTCTTTATTTGCTGCATTGTCATATGGGGCTGCTTCCATGGCTATGGTTTTCATCAATAAAGCTGTTCTTATGGAGTACTCCCATTCAATGACACTTCTCACCATGCAGCAATTGGCCACTGCTTTGCTTATACATTTCGGTCGAAGAATGGGATACACGAGATCGAGAGGACTAGAAATGAGCACTGCCAAGAAACTTCTCCCCGTGTCGCTTTTCTATAATGCTAATGTCGCATTTGCGTTGGCCAGTCTGAAGGGAGTCAATATTCCCATGTACATTGCAATCAAAAGACTCACACCGCTTGCTGTGCTTATCGCTGGATTCTTCTCTGGAAAGGGGAAACCCTCAATACAGGTGATTCTTTCAGTGATATTGACTGCTGGAGGGGTTGTCATAGCAGCACTAGGAGACTTTTCATTTGATCTTTTTGGATATAGCTTGGCCTTGACTTCAGTTTTTTTCCAGACCATGTACCTTGTGCTAGTGGAGAAGTCTGGTGCAGAGGATGGGCTATCATCAGTTGAGATCATGTTCTATAACAGCTTTCTGTCTCTTCCATTTTTGCTATTTCTCATTATAGCTACCGGAGAATTTCCAAATTCTTTCTCATTACTACTTGTAAAGAGCAAATCCATACATTTTTTGGTGATCCTTATTCTTTCATTTGTTATGGGCATCGCTCTCAACTTCACCATGTTCTTATGTACCATAGTCAACTCTGCTCTGACAACGACCATAGTTGGAGTCCTAAAAGGGGTTGGGTCCACGACCCTTGGTTTTGTCTTACTGGGTGGTGTGCAAGTACATGGTTTGAATGTGACTGGACTAGTTATCAACACAGCCGGTGGAGTTTGGTATTCATATGCCAAATATCAGCAAAGGAAGAGCAAGGCCCCAAAACGGGTATCAGATGTGGAGACTTACCATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

339

Amino Acids

36.87

Weight (kDa)

9.77

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	40 - 316	5.4e-15	Triose-phosphate Transporter family
UAA	PF08449	51 - 281	7.6e-09	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	386
AclWI	GGATC	1 cut(s)	730
AcoI	YGGCCR	2 cut(s)	201, 330
AcsI	RAATTY	2 cut(s)	677, 685
AcuI	CTGAAG	2 cut(s)	359, 522
AfaI	GTAC	5 cut(s)	164, 362, 560, 793, 891
AfiI	CCNNNNNNNGG	3 cut(s)	841, 987, 988
AgsI	TTSAA	2 cut(s)	174, 901
AhlI	ACTAGT	1 cut(s)	913
AluBI	AGCT	4 cut(s)	149, 525, 630, 668
AluI	AGCT	4 cut(s)	149, 525, 630, 668
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	3 cut(s)	489, 642, 998
AlwI	GGATC	1 cut(s)	730
AoxI	GGCC	5 cut(s)	35, 201, 330, 528, 978
ApeKI	GCWGC	4 cut(s)	98, 116, 193, 485
ApoI	RAATTY	2 cut(s)	677, 685
ArsI	GACNNNNNNTTYG	2 cut(s)	488, 520
AspS9I	GGNCC	2 cut(s)	849, 979
AsuHPI	GGTGA	4 cut(s)	178, 454, 745, 769
AvaII	GGWCC	1 cut(s)	849
BalI	TGGCCA	2 cut(s)	203, 332
BauI	CACGAG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	85, 103, 205, 497
BccI	CCATC	1 cut(s)	587
BciVI	GTATCC	1 cut(s)	233
BcoDI	GTCTC	3 cut(s)	489, 642, 998
BcuI	ACTAGT	1 cut(s)	913
BfaI	CTAG	4 cut(s)	260, 491, 569, 914
BfuI	GTATCC	1 cut(s)	233
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	4 cut(s)	99, 117, 194, 486
BlsI	GCNGC	4 cut(s)	100, 118, 195, 487
BmcAI	AGTACT	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	849
BmgT120I	GGNCC	2 cut(s)	849, 979
BmiI	GGNNCC	2 cut(s)	850, 981
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	1 cut(s)	771
BmuI	ACTGGG	1 cut(s)	884
BpmI	CTGGAG	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	123, 859
BsaWI	WCCGGW	1 cut(s)	671
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	841, 987, 988
Bse118I	RCCGGY	1 cut(s)	929
Bse1I	ACTGG	4 cut(s)	48, 333, 879, 913
Bse3DI	GCAATG	1 cut(s)	363
BseDI	CCNNGG	2 cut(s)	123, 859
BseGI	GGATG	2 cut(s)	76, 598
BseLI	CCNNNNNNNGG	3 cut(s)	841, 987, 988
BseMI	GCAATG	1 cut(s)	363
BseNI	ACTGG	4 cut(s)	48, 333, 879, 913
BseXI	GCAGC	4 cut(s)	85, 103, 205, 497
BsgI	GTGCAG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	5 cut(s)	37, 203, 332, 530, 980
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	672, 930
BslI	CCNNNNNNNGG	3 cut(s)	841, 987, 988
BsmAI	GTCTC	3 cut(s)	489, 642, 998
BsnI	GGCC	5 cut(s)	37, 203, 332, 530, 980
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	5 cut(s)	71, 248, 508, 612, 735
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	5 cut(s)	37, 203, 332, 530, 980
BspLI	GGNNCC	2 cut(s)	850, 981
BspPI	GGATC	1 cut(s)	730
BspQI	GCTCTTC	1 cut(s)	965
BsrDI	GCAATG	1 cut(s)	363
BsrFI	RCCGGY	1 cut(s)	929
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	4 cut(s)	48, 333, 879, 913
BssAI	RCCGGY	1 cut(s)	929
BssECI	CCNNGG	2 cut(s)	123, 859
BssMI	GATC	5 cut(s)	71, 248, 508, 612, 735
BssSI	CACGAG	1 cut(s)	244
BssT1I	CCWWGG	2 cut(s)	123, 859
Bst2BI	CACGAG	1 cut(s)	244
Bst6I	CTCTTC	2 cut(s)	645, 965
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	390
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	76, 598
BstKTI	GATC	5 cut(s)	74, 251, 511, 615, 738
BstMAI	GTCTC	3 cut(s)	489, 642, 998
BstMBI	GATC	5 cut(s)	71, 248, 508, 612, 735
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 317, 394
BstV1I	GCAGC	4 cut(s)	85, 103, 205, 497
BstX2I	RGATCY	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	233
BsuRI	GGCC	5 cut(s)	37, 203, 332, 530, 980
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	748
BtsCI	GGATG	2 cut(s)	76, 598
BtsI	GCAGTG	2 cut(s)	204, 270
BtsIMutI	CAGTG	3 cut(s)	204, 270, 459
Cac8I	GCNNGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	929
Cfr13I	GGNCC	2 cut(s)	849, 979
Csp6I	GTAC	5 cut(s)	163, 361, 559, 792, 890
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
CviAII	CATG	7 cut(s)	124, 190, 358, 556, 616, 781, 893
CviQI	GTAC	5 cut(s)	163, 361, 559, 792, 890
DpnI	GATC	5 cut(s)	73, 250, 510, 614, 737
DpnII	GATC	5 cut(s)	71, 248, 508, 612, 735
EaeI	YGGCCR	2 cut(s)	201, 330
Eam1104I	CTCTTC	2 cut(s)	645, 965
EarI	CTCTTC	2 cut(s)	645, 965
Eco130I	CCWWGG	2 cut(s)	123, 859
Eco47I	GGWCC	1 cut(s)	849
Eco57I	CTGAAG	2 cut(s)	359, 522
EcoO109I	RGGNCCY	1 cut(s)	979
EcoT14I	CCWWGG	2 cut(s)	123, 859
ErhI	CCWWGG	2 cut(s)	123, 859
FaeI	CATG	7 cut(s)	127, 193, 361, 559, 619, 784, 896
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	7 cut(s)	123, 189, 357, 555, 615, 780, 892
FauNDI	CATATG	2 cut(s)	109, 949
Fnu4HI	GCNGC	4 cut(s)	99, 117, 194, 486
FokI	GGATG	2 cut(s)	63, 605
Fsp4HI	GCNGC	4 cut(s)	99, 117, 194, 486
FspBI	CTAG	4 cut(s)	260, 491, 569, 914
GluI	GCNGC	4 cut(s)	99, 117, 194, 486
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	5 cut(s)	37, 203, 332, 530, 980
HapII	CCGG	2 cut(s)	672, 930
Hin1II	CATG	7 cut(s)	127, 193, 361, 559, 619, 784, 896
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	6 cut(s)	83, 345, 378, 408, 445, 831
HpaII	CCGG	2 cut(s)	672, 930
HphI	GGTGA	4 cut(s)	178, 454, 745, 769
Hpy166II	GTNNAC	2 cut(s)	802, 852
Hpy188I	TCNGA	5 cut(s)	26, 71, 339, 813, 997
Hpy188III	TCNNGA	4 cut(s)	80, 252, 417, 550
Hpy8I	GTNNAC	2 cut(s)	802, 852
HpyAV	CCTTC	3 cut(s)	27, 69, 334
HpyCH4V	TGCA	5 cut(s)	101, 193, 368, 587, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 317, 394
Hsp92II	CATG	7 cut(s)	127, 193, 361, 559, 619, 784, 896
Kzo9I	GATC	5 cut(s)	71, 248, 508, 612, 735
LguI	GCTCTTC	1 cut(s)	965
Lsp1109I	GCAGC	4 cut(s)	85, 103, 205, 497
LweI	GCATC	1 cut(s)	771
MaeI	CTAG	4 cut(s)	260, 491, 569, 914
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	5 cut(s)	73, 250, 510, 614, 737
MboI	GATC	5 cut(s)	71, 248, 508, 612, 735
MboII	GAAGA	5 cut(s)	78, 243, 403, 632, 982
MfeI	CAATTG	1 cut(s)	197
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	272
MlsI	TGGCCA	2 cut(s)	203, 332
MluCI	AATT	3 cut(s)	197, 677, 685
MluNI	TGGCCA	2 cut(s)	203, 332
MlyI	GAGTC	3 cut(s)	354, 372, 840
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	5 cut(s)	73, 248, 442, 464, 583
Mox20I	TGGCCA	2 cut(s)	203, 332
MscI	TGGCCA	2 cut(s)	203, 332
MslI	CAYNNNNRTG	1 cut(s)	128
Msp20I	TGGCCA	2 cut(s)	203, 332
MspI	CCGG	2 cut(s)	672, 930
MunI	CAATTG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	125, 317, 394
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	2 cut(s)	109, 949
NdeII	GATC	5 cut(s)	71, 248, 508, 612, 735
NlaIII	CATG	7 cut(s)	127, 193, 361, 559, 619, 784, 896
NlaIV	GGNNCC	2 cut(s)	850, 981
NmuCI	GTSAC	1 cut(s)	904
PciSI	GCTCTTC	1 cut(s)	965
PfeI	GAWTC	3 cut(s)	83, 408, 445
PkrI	GCNGC	4 cut(s)	100, 118, 195, 487
PleI	GAGTC	3 cut(s)	353, 372, 839
PpsI	GAGTC	3 cut(s)	353, 372, 839
PspN4I	GGNNCC	2 cut(s)	850, 981
PspPI	GGNCC	2 cut(s)	849, 979
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	5 cut(s)	164, 362, 560, 793, 891
RsaNI	GTAC	5 cut(s)	163, 361, 559, 792, 890
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	965
SatI	GCNGC	4 cut(s)	99, 117, 194, 486
Sau3AI	GATC	5 cut(s)	71, 248, 508, 612, 735
Sau96I	GGNCC	2 cut(s)	849, 979
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	3 cut(s)	354, 372, 840
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	6 cut(s)	151, 444, 527, 564, 632, 670
SfaNI	GCATC	1 cut(s)	771
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	913
Sse9I	AATT	3 cut(s)	197, 677, 685
SsiI	CCGC	1 cut(s)	386
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	4 cut(s)	260, 491, 569, 914
StyI	CCWWGG	2 cut(s)	123, 859
TaqI	TCGA	2 cut(s)	229, 251
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	197, 677, 685
TatI	WGTACW	3 cut(s)	162, 360, 889
TfiI	GAWTC	3 cut(s)	83, 408, 445
TscAI	CASTG	3 cut(s)	211, 277, 459
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	4 cut(s)	98, 116, 193, 485
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	4 cut(s)	127, 492, 738, 936
TspRI	CASTG	3 cut(s)	211, 277, 459
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	2 cut(s)	677, 685
XcmI	CCANNNNNNNNNTGG	2 cut(s)	196, 727
XspI	CTAG	4 cut(s)	260, 491, 569, 914
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.