Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Forward (+)

7397894 .. 7401211

Gene Structure 3318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1105900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGAAATGTATTGAGACAGAAGCTAGCTCGTTTTTGAGTTTGTCCGCGGCCTTGTCGTATGGGGCTGCTTCCATGGCGATGGTTTTCATCAATAAAGCGGTTATTATGGAGTACTCACACTCCATGACCCTTCTCACAATGCAGCAATTGGCAACTGCTTTGCTTATATATGTTGGTCGAAGATTTGGATACACGAGATCAAGAGGATTAGAAATGTCCACTGCGAAAAAGCTTCTCCCTGTGTCGCTTTTCTATAATGCTAATGTGGCGTTTGCATTGGCCAGTTTGAAGGGAGTTAATATTCCCATGTATATTGCAATCAAAAGACTCACACCGCTTGCTGTGCTTGTAGCTGGATTCTTCTCAGGGAAGGGGAGACCCTCAATACAGGTGTGTCTTTCAGTAATATTGACTGCAGTTGGGGTTCTGATAGCTGCACTTGGAGATTTTTCGTTTGACCTTTTTGGATATAGCATGGCCCTCACTTCTGTCTTTTTCCAGACCATGTACCTTGTGTTGGTGGAGAAATCTGGTGCTGAAGATGGGCTATCATCAGTTGAGATCATGTACTATAACAGCTTTCTGTCTCTTCCGTTTTTGATGCTTCTCATTGTAGCTACCGGAGAATTTCCAAATTCTTTATCATTACTAGTTGCAAAGAGTAATTCCTTGTACTTTTTGGTGATCCTCATTCTTTCATTTATCATGGGCATTGTTCTCAACTTCACCATGTTCTTATGTACGATAGTCAACTCCGCTCTAACAACAACCATCGTTGGAGTCCTAAAAGGGGTTGGGTCGACGACTCTCGGTTTTGTACTACTGGGTGGCGTGCAAGTACATGTTTTGAATGTGACTGGACTGGTTATCAACACAGCCGGCGGAGTTTGGTACTCGTTTGCCAAATATCAACAGAGGAAGAGCAAGCCCGCAAAGCGGATTGCAGATGTGGAGGCTCATCGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

324

Amino Acids

34.95

Weight (kDa)

9.5

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 300	7e-13	Triose-phosphate Transporter family
UAA	PF08449	41 - 263	2.9e-07	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	761
AccI	GTMKAC	1 cut(s)	803
AccII	CGCG	1 cut(s)	50
AciI	CCGC	8 cut(s)	48, 50, 101, 338, 759, 885, 933, 940
AclWI	GGATC	1 cut(s)	682
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	629, 637
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	8 cut(s)	116, 512, 572, 677, 745, 822, 843, 896
AfiI	CCNNNNNNNGG	3 cut(s)	520, 793, 939
AflIII	ACRYGT	1 cut(s)	844
AgsI	TTSAA	2 cut(s)	292, 853
AhlI	ACTAGT	1 cut(s)	652
AluBI	AGCT	7 cut(s)	26, 30, 235, 356, 437, 582, 620
AluI	AGCT	7 cut(s)	26, 30, 235, 356, 437, 582, 620
Alw26I	GTCTC	3 cut(s)	11, 373, 594
AlwI	GGATC	1 cut(s)	682
AoxI	GGCC	3 cut(s)	51, 282, 480
ApeKI	GCWGC	3 cut(s)	68, 145, 437
ApoI	RAATTY	2 cut(s)	629, 637
AspS9I	GGNCC	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	697, 721
AsuNHI	GCTAGC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	284
BauI	CACGAG	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	55, 157, 424
BccI	CCATC	3 cut(s)	76, 539, 782
BciVI	GTATCC	1 cut(s)	185
BcoDI	GTCTC	3 cut(s)	11, 373, 594
BcuI	ACTAGT	1 cut(s)	652
BfaI	CTAG	2 cut(s)	27, 653
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	51, 69, 146, 438
BlsI	GCNGC	4 cut(s)	52, 70, 147, 439
BmcAI	AGTACT	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	481
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	1 cut(s)	594
BmtI	GCTAGC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	836
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	48, 75
BsaWI	WCCGGW	1 cut(s)	623
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	520, 793, 939
Bse118I	RCCGGY	1 cut(s)	881
Bse1I	ACTGG	4 cut(s)	285, 831, 865, 870
BseDI	CCNNGG	2 cut(s)	48, 75
BseLI	CCNNNNNNNGG	3 cut(s)	520, 793, 939
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	4 cut(s)	285, 831, 865, 870
BseXI	GCAGC	3 cut(s)	55, 157, 424
BsgI	GTGCAG	1 cut(s)	423
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	53, 284, 482
BsiSI	CCGG	2 cut(s)	624, 882
BslI	CCNNNNNNNGG	3 cut(s)	520, 793, 939
BsmAI	GTCTC	3 cut(s)	11, 373, 594
BsnI	GGCC	3 cut(s)	53, 284, 482
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	200, 564, 687
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	8 cut(s)	48, 50, 101, 338, 759, 885, 933, 940
BspANI	GGCC	3 cut(s)	53, 284, 482
BspCNI	CTCAG	1 cut(s)	380
BspFNI	CGCG	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	421
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	682
BspQI	GCTCTTC	1 cut(s)	917
BspTNI	GGTCTC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	881
BsrI	ACTGG	4 cut(s)	285, 831, 865, 870
BssAI	RCCGGY	1 cut(s)	881
BssECI	CCNNGG	2 cut(s)	48, 75
BssMI	GATC	3 cut(s)	200, 564, 687
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	597, 917
BstC8I	GCNNGC	6 cut(s)	28, 342, 836, 883, 929, 933
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	2 cut(s)	48, 75
BstFNI	CGCG	1 cut(s)	50
BstKTI	GATC	3 cut(s)	203, 567, 690
BstMAI	GTCTC	3 cut(s)	11, 373, 594
BstMBI	GATC	3 cut(s)	200, 564, 687
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 269, 346, 937
BstNSI	RCATGY	1 cut(s)	848
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	3 cut(s)	55, 157, 424
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	3 cut(s)	53, 284, 482
BtgI	CCRYGG	2 cut(s)	48, 75
BtgZI	GCGATG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	6 cut(s)	28, 342, 836, 883, 929, 933
Cfr10I	RCCGGY	1 cut(s)	881
Cfr13I	GGNCC	1 cut(s)	481
Cfr42I	CCGCGG	1 cut(s)	51
Csp6I	GTAC	8 cut(s)	115, 511, 571, 676, 744, 821, 842, 895
CviAII	CATG	9 cut(s)	76, 127, 310, 478, 508, 568, 709, 733, 845
CviQI	GTAC	8 cut(s)	115, 511, 571, 676, 744, 821, 842, 895
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	3 cut(s)	202, 566, 689
DpnII	GATC	3 cut(s)	200, 564, 687
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	2 cut(s)	597, 917
EarI	CTCTTC	2 cut(s)	597, 917
EciI	GGCGGA	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	9 cut(s)	79, 130, 313, 481, 511, 571, 712, 736, 848
FatI	CATG	9 cut(s)	75, 126, 309, 477, 507, 567, 708, 732, 844
FauI	CCCGC	1 cut(s)	940
FblI	GTMKAC	1 cut(s)	803
Fnu4HI	GCNGC	4 cut(s)	51, 69, 146, 438
Fsp4HI	GCNGC	4 cut(s)	51, 69, 146, 438
FspBI	CTAG	2 cut(s)	27, 653
GluI	GCNGC	4 cut(s)	51, 69, 146, 438
HaeIII	GGCC	3 cut(s)	53, 284, 482
HapII	CCGG	2 cut(s)	624, 882
Hin1II	CATG	9 cut(s)	79, 130, 313, 481, 511, 571, 712, 736, 848
HincII	GTYRAC	2 cut(s)	754, 804
HindII	GTYRAC	2 cut(s)	754, 804
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	4 cut(s)	330, 360, 783, 808
HpaII	CCGG	2 cut(s)	624, 882
HphI	GGTGA	2 cut(s)	697, 721
Hpy166II	GTNNAC	3 cut(s)	222, 754, 804
Hpy188I	TCNGA	1 cut(s)	432
Hpy188III	TCNNGA	2 cut(s)	204, 502
Hpy8I	GTNNAC	3 cut(s)	222, 754, 804
Hpy99I	CGWCG	1 cut(s)	808
HpyAV	CCTTC	3 cut(s)	143, 286, 367
HpyCH4V	TGCA	8 cut(s)	145, 278, 320, 419, 440, 659, 838, 947
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 269, 346, 937
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	9 cut(s)	79, 130, 313, 481, 511, 571, 712, 736, 848
KroI	GCCGGC	1 cut(s)	881
KroNI	GCCGGC	1 cut(s)	883
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	200, 564, 687
LguI	GCTCTTC	1 cut(s)	917
Lsp1109I	GCAGC	3 cut(s)	55, 157, 424
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	2 cut(s)	27, 653
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	3 cut(s)	202, 566, 689
MbiI	CCGCTC	1 cut(s)	761
MboI	GATC	3 cut(s)	200, 564, 687
MboII	GAAGA	5 cut(s)	195, 355, 554, 584, 934
MfeI	CAATTG	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	4 cut(s)	149, 629, 637, 667
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	324, 792, 802
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	6 cut(s)	200, 394, 494, 701, 912, 949
Mox20I	TGGCCA	1 cut(s)	284
MroNI	GCCGGC	1 cut(s)	881
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	2 cut(s)	624, 882
MunI	CAATTG	1 cut(s)	149
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	4 cut(s)	77, 269, 346, 937
NaeI	GCCGGC	1 cut(s)	883
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	200, 564, 687
NgoMIV	GCCGGC	1 cut(s)	881
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	9 cut(s)	79, 130, 313, 481, 511, 571, 712, 736, 848
NmuCI	GTSAC	1 cut(s)	856
NspI	RCATGY	1 cut(s)	848
PciI	ACATGT	1 cut(s)	844
PciSI	GCTCTTC	1 cut(s)	917
PdiI	GCCGGC	1 cut(s)	883
PfeI	GAWTC	1 cut(s)	360
PkrI	GCNGC	4 cut(s)	52, 70, 147, 439
PleI	GAGTC	3 cut(s)	324, 791, 802
PpsI	GAGTC	3 cut(s)	324, 791, 802
PscI	ACATGT	1 cut(s)	844
PspPI	GGNCC	1 cut(s)	481
PstI	CTGCAG	1 cut(s)	421
RsaI	GTAC	8 cut(s)	116, 512, 572, 677, 745, 822, 843, 896
RsaNI	GTAC	8 cut(s)	115, 511, 571, 676, 744, 821, 842, 895
RseI	CAYNNNNRTG	1 cut(s)	80
SacII	CCGCGG	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	802
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	4 cut(s)	51, 69, 146, 438
Sau3AI	GATC	3 cut(s)	200, 564, 687
Sau96I	GGNCC	1 cut(s)	481
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	3 cut(s)	324, 792, 802
SfaNI	GCATC	1 cut(s)	594
SfcI	CTRYAG	1 cut(s)	417
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	652
Sse9I	AATT	4 cut(s)	149, 629, 637, 667
SsiI	CCGC	8 cut(s)	48, 50, 101, 338, 759, 885, 933, 940
SspI	AATATT	2 cut(s)	304, 411
SspMI	CTAG	2 cut(s)	27, 653
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	181, 803, 964
TasI	AATT	4 cut(s)	149, 629, 637, 667
TatI	WGTACW	5 cut(s)	114, 570, 675, 820, 841
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	3 cut(s)	68, 145, 437
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	2 cut(s)	79, 690
TspGWI	ACGGA	1 cut(s)	585
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	629, 637
XceI	RCATGY	1 cut(s)	848
XmiI	GTMKAC	1 cut(s)	803
XspI	CTAG	2 cut(s)	27, 653
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.