Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Forward (+)

66509128 .. 66511879

Gene Structure 2752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG451100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGATAAACTCACTGATGCAGGAGCTGCTAGTCCTTCTTTGAGTTTATTTGCTGCATTGTCATATGGGGCTGCTTCCATGGCTATGGTTTTCATCAATAAAGCTGTTCTTATGGAGTACTCCCATTCAATGACACTTCTCACTATGCAGCAATTGGCCACTGCTTTGCTTATACATTTTGGTCGAAGAATGGGATACACGAGATCAAGAGAACTAGAAATGAGCACTGCCAGGAAACTTCTCCCCGTGTCGCTTTTCTATAATGCTAACGTCGCATTTGCTTTGGCCAGTCTGAAGGGAGTCAATATTCCCATGTACATTGCAATCAAAAGACTCACACCGCTTGCTGTGCTTATCGCTGGATTCTTCTCAGGAAAGGGGAAACCCTCAATACAGGTGATCCTTTCAGTGATATTGACTGCTGGAGGGGTTGTCATAGCAGCAATAGGAGACTTTTCATTTGATCTTTTTGGATATAGCTTGGCCCTCACTTCAGTTTTTTTCCAGACCATGTACCTTGTGCTAGTGGAGAAGTCTGGTGCAGAGGATGGGCTATCATCAGTTGAGATCATGTTCTATAACAGCTTTCTGTCTCTTCCATTTTTGCTATTTCTCATTATAGCTACCGGAGAATTTCCAAATTCTTTCTCATTACTACTTGGAAAGAGCAAATCCATACATTTTTTGGTGATCCTTATTCTTTCATTTGTTATGGGCATTGCTCTCAACTTCACCATGTTCTTATGTACCATAGTCAACTCTGCTCTGACAACGACCATAGTTGGAGTCCTAAAAGGGGTTGGGTCCACGACCCTTGGTTTTGTCTTGCTGGGTGGTGTGCAAGTACATGGTTTAAATGTGACTGGACTAGTTATCAACACAGCTGGTGGAGTTTGGTATTCATATGCCAAATATCAGCAAAGGAAGAGCAAGGCCCCAAAACGGGTATCAGATGTGGAGACTTACCATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

324

Amino Acids

34.93

Weight (kDa)

9.61

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 301	9.6e-16	Triose-phosphate Transporter family
UAA	PF08449	33 - 267	6.2e-09	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	2 cut(s)	394, 685
AcoI	YGGCCR	2 cut(s)	156, 285
AcsI	RAATTY	2 cut(s)	632, 640
AcuI	CTGAAG	2 cut(s)	314, 477
AfaI	GTAC	5 cut(s)	119, 317, 515, 748, 846
AfiI	CCNNNNNNNGG	3 cut(s)	796, 942, 943
AgsI	TTSAA	1 cut(s)	129
AhlI	ACTAGT	1 cut(s)	868
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	6 cut(s)	26, 104, 480, 585, 623, 884
AluI	AGCT	6 cut(s)	26, 104, 480, 585, 623, 884
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	3 cut(s)	444, 597, 953
AlwI	GGATC	2 cut(s)	394, 685
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	4 cut(s)	156, 285, 483, 933
ApeKI	GCWGC	5 cut(s)	26, 53, 71, 148, 440
ApoI	RAATTY	2 cut(s)	632, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspS9I	GGNCC	3 cut(s)	484, 804, 934
AsuHPI	GGTGA	3 cut(s)	409, 700, 724
AvaII	GGWCC	1 cut(s)	804
BalI	TGGCCA	2 cut(s)	158, 287
BauI	CACGAG	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	5 cut(s)	13, 40, 58, 160, 452
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	188
BcoDI	GTCTC	3 cut(s)	444, 597, 953
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	4 cut(s)	30, 215, 524, 869
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
BlsI	GCNGC	5 cut(s)	28, 55, 73, 150, 442
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	232
Bme18I	GGWCC	1 cut(s)	804
BmgT120I	GGNCC	3 cut(s)	484, 804, 934
BmiI	GGNNCC	2 cut(s)	805, 936
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	78, 814
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	796, 942, 943
Bse1I	ACTGG	2 cut(s)	288, 868
Bse3DI	GCAATG	2 cut(s)	318, 717
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	78, 814
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	3 cut(s)	796, 942, 943
BseMI	GCAATG	2 cut(s)	318, 717
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	288, 868
BseXI	GCAGC	5 cut(s)	13, 40, 58, 160, 452
BseYI	CCCAGC	1 cut(s)	829
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	4 cut(s)	158, 287, 485, 935
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	627
BslI	CCNNNNNNNGG	3 cut(s)	796, 942, 943
BsmAI	GTCTC	3 cut(s)	444, 597, 953
BsnI	GGCC	4 cut(s)	158, 287, 485, 935
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	5 cut(s)	203, 399, 463, 567, 690
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	4 cut(s)	158, 287, 485, 935
BspCNI	CTCAG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	805, 936
BspPI	GGATC	2 cut(s)	394, 685
BspQI	GCTCTTC	1 cut(s)	920
BsrDI	GCAATG	2 cut(s)	318, 717
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	288, 868
BssECI	CCNNGG	2 cut(s)	78, 814
BssMI	GATC	5 cut(s)	203, 399, 463, 567, 690
BssSI	CACGAG	1 cut(s)	199
BssT1I	CCWWGG	2 cut(s)	78, 814
Bst2BI	CACGAG	1 cut(s)	199
Bst2UI	CCWGG	1 cut(s)	232
Bst6I	CTCTTC	2 cut(s)	600, 920
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	370
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	5 cut(s)	206, 402, 466, 570, 693
BstMAI	GTCTC	3 cut(s)	444, 597, 953
BstMBI	GATC	5 cut(s)	203, 399, 463, 567, 690
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 80, 272, 349
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstV1I	GCAGC	5 cut(s)	13, 40, 58, 160, 452
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	158, 287, 485, 935
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	2 cut(s)	159, 225
BtsIMutI	CAGTG	4 cut(s)	12, 159, 225, 414
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	484, 804, 934
Csp6I	GTAC	5 cut(s)	118, 316, 514, 747, 845
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviAII	CATG	6 cut(s)	79, 313, 511, 571, 736, 848
CviQI	GTAC	5 cut(s)	118, 316, 514, 747, 845
DdeI	CTNAG	1 cut(s)	370
DpnI	GATC	5 cut(s)	205, 401, 465, 569, 692
DpnII	GATC	5 cut(s)	203, 399, 463, 567, 690
DraI	TTTAAA	1 cut(s)	855
EaeI	YGGCCR	2 cut(s)	156, 285
Eam1104I	CTCTTC	2 cut(s)	600, 920
EarI	CTCTTC	2 cut(s)	600, 920
Eco130I	CCWWGG	2 cut(s)	78, 814
Eco47I	GGWCC	1 cut(s)	804
Eco57I	CTGAAG	2 cut(s)	314, 477
EcoO109I	RGGNCCY	1 cut(s)	934
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	78, 814
ErhI	CCWWGG	2 cut(s)	78, 814
FaeI	CATG	6 cut(s)	82, 316, 514, 574, 739, 851
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	6 cut(s)	78, 312, 510, 570, 735, 847
FauNDI	CATATG	2 cut(s)	64, 904
Fnu4HI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
FspBI	CTAG	4 cut(s)	30, 215, 524, 869
GluI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
GsaI	CCCAGC	1 cut(s)	833
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	4 cut(s)	158, 287, 485, 935
HapII	CCGG	1 cut(s)	627
Hin1II	CATG	6 cut(s)	82, 316, 514, 574, 739, 851
HincII	GTYRAC	1 cut(s)	757
HindII	GTYRAC	1 cut(s)	757
HinfI	GANTC	4 cut(s)	300, 333, 363, 786
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	3 cut(s)	409, 700, 724
Hpy166II	GTNNAC	2 cut(s)	757, 807
Hpy188I	TCNGA	3 cut(s)	294, 768, 952
Hpy188III	TCNNGA	3 cut(s)	207, 372, 505
Hpy8I	GTNNAC	2 cut(s)	757, 807
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	2 cut(s)	45, 289
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	20, 56, 148, 323, 542, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 80, 272, 349
HpyF3I	CTNAG	1 cut(s)	370
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	6 cut(s)	82, 316, 514, 574, 739, 851
Kzo9I	GATC	5 cut(s)	203, 399, 463, 567, 690
LguI	GCTCTTC	1 cut(s)	920
LmnI	GCTCC	1 cut(s)	23
Lsp1109I	GCAGC	5 cut(s)	13, 40, 58, 160, 452
LweI	GCATC	1 cut(s)	7
MaeI	CTAG	4 cut(s)	30, 215, 524, 869
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	5 cut(s)	205, 401, 465, 569, 692
MboI	GATC	5 cut(s)	203, 399, 463, 567, 690
MboII	GAAGA	4 cut(s)	198, 358, 587, 937
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	2 cut(s)	158, 287
MluCI	AATT	3 cut(s)	152, 632, 640
MluNI	TGGCCA	2 cut(s)	158, 287
MlyI	GAGTC	3 cut(s)	309, 327, 795
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	4 cut(s)	397, 419, 497, 538
Mox20I	TGGCCA	2 cut(s)	158, 287
MscI	TGGCCA	2 cut(s)	158, 287
MseI	TTAA	1 cut(s)	854
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	2 cut(s)	158, 287
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	1 cut(s)	627
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	26, 80, 272, 349
NcoI	CCATGG	1 cut(s)	78
NdeI	CATATG	2 cut(s)	64, 904
NdeII	GATC	5 cut(s)	203, 399, 463, 567, 690
NlaIII	CATG	6 cut(s)	82, 316, 514, 574, 739, 851
NlaIV	GGNNCC	2 cut(s)	805, 936
NmuCI	GTSAC	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	5 cut(s)	28, 55, 73, 150, 442
PleI	GAGTC	3 cut(s)	308, 327, 794
PpsI	GAGTC	3 cut(s)	308, 327, 794
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	2 cut(s)	805, 936
PspPI	GGNCC	3 cut(s)	484, 804, 934
PstNI	CAGNNNCTG	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	5 cut(s)	119, 317, 515, 748, 846
RsaNI	GTAC	5 cut(s)	118, 316, 514, 747, 845
RseI	CAYNNNNRTG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	920
SaqAI	TTAA	1 cut(s)	854
SatI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
Sau3AI	GATC	5 cut(s)	203, 399, 463, 567, 690
Sau96I	GGNCC	3 cut(s)	484, 804, 934
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	3 cut(s)	309, 327, 795
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	9 cut(s)	28, 106, 273, 399, 482, 519, 587, 625, 886
SfaNI	GCATC	1 cut(s)	7
SinI	GGWCC	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	83
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	3 cut(s)	152, 632, 640
SsiI	CCGC	1 cut(s)	341
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	4 cut(s)	30, 215, 524, 869
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	78, 814
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	152, 632, 640
TatI	WGTACW	3 cut(s)	117, 315, 844
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	854
Tru9I	TTAA	1 cut(s)	854
TscAI	CASTG	4 cut(s)	19, 166, 232, 414
TseFI	GTSAC	1 cut(s)	859
TseI	GCWGC	5 cut(s)	26, 53, 71, 148, 440
Tsp45I	GTSAC	1 cut(s)	859
TspDTI	ATGAA	4 cut(s)	82, 447, 693, 891
TspRI	CASTG	4 cut(s)	19, 166, 232, 414
VpaK11BI	GGWCC	1 cut(s)	804
XapI	RAATTY	2 cut(s)	632, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	682
XspI	CTAG	4 cut(s)	30, 215, 524, 869
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.