Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Forward (+)

38349629 .. 38353622

Gene Structure 3994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G457700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGAAACTTCCTGATGCAGAAGTTAGCTCAATTTTGAGTTTGTCTGCGGCTTTGTCGTATGGGGCTGCTTCCATGGCAATGGTTTTTATCAATAAAGCAGTTCTTATGGAGTACTCACATTCAATGACTCTTCTCACTGTCCAGCAATTGGCAACTGCTTTGCTTATACACGTTGGTCGAAGATTGGGATATACCAGGTCAAGAGGATTAGAAATGAGCACTGCAAAAAAACTTCTCCCGGTGTCGCTGTTCTATAATGCTAATGTGGCGTTTGCTTTGGCCAGTTTGAAGGGAGTTAATATTCCCATGTATATTGCAATCAAAAGACTCACACCTCTCGCTGTGCTTATAGCTGGGTTCGTCTCAGGAAAGGGGAAACCCACAATACAGGTGTCTCTTTCAGTAATATTGACTGCAGGAGGGGTTGTGATAGCTGCACTGGGAGATTTTTCGTTTGACTTTTTTGGATATAGCATGGCTCTCACTTCTGTTTTTTTCCAGACCATGTACCTTGTGTTGGTGGAGAAATCTGGGGCAGAGGATGGGCTATCATCAGTTGAGATCATGTACTATAACAGCTTTCTGTCTCTTCCAGTTTTGATGTTTCTCATTGTAGCTACAGGAGAATTTCCAAATTCTCTATTATTACTAATTGCAAAGAGTAATTCGTTTTATTTTTTGGTGATCCTTATTCTTTCATTTGTTATGGGCATTGTTCTCAACTACACCATGTTCTTATGTACCATAGTCAACTCCGCTCTAACAACAACTATCGTTGGAGTCCTAAAAGGGGTTGGCTCTACGACCCTTGGTTTTGTCTTACTGGGTGGTGTGCAAGTGCATTTTCTGAATGTGACTGGACTAGTTATCAACACAGCTGGCGGAGTTTGGTATTCATTTGCCAAATATCAGCAAAGGAAGAGCAAGCCCCCGAAGAGGATTTCAGACGTGGAGGCTCATCGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

324

Amino Acids

34.87

Weight (kDa)

9.59

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	151
AccBSI	CCGCTC	1 cut(s)	761
AciI	CCGC	3 cut(s)	50, 759, 885
AclWI	GGATC	1 cut(s)	682
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	629, 637
AfaI	GTAC	4 cut(s)	116, 512, 572, 745
AfiI	CCNNNNNNNGG	4 cut(s)	151, 520, 793, 939
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	126, 292
AhlI	ACTAGT	1 cut(s)	865
AjiI	CACGTC	1 cut(s)	952
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	6 cut(s)	30, 356, 437, 582, 620, 881
AluI	AGCT	6 cut(s)	30, 356, 437, 582, 620, 881
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	3 cut(s)	370, 402, 594
AlwI	GGATC	1 cut(s)	682
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	68, 437
ApoI	RAATTY	2 cut(s)	629, 637
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	55, 424
BccI	CCATC	1 cut(s)	539
BciT130I	CCWGG	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	370, 402, 594
BcuI	ACTAGT	1 cut(s)	865
BfaI	CTAG	1 cut(s)	866
BfmI	CTRYAG	2 cut(s)	417, 621
BisI	GCNGC	3 cut(s)	51, 69, 438
BlsI	GCNGC	3 cut(s)	52, 70, 439
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	2 cut(s)	199, 242
BmgBI	CACGTC	1 cut(s)	952
BmrFI	CCNGG	2 cut(s)	199, 242
BmrI	ACTGGG	2 cut(s)	452, 836
BmsI	GCATC	1 cut(s)	7
BmuI	ACTGGG	2 cut(s)	452, 836
BpuMI	CCSGG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	75, 811
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 520, 793, 939
Bse1I	ACTGG	5 cut(s)	285, 447, 596, 831, 865
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	75, 811
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	4 cut(s)	151, 520, 793, 939
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	5 cut(s)	285, 447, 596, 831, 865
BseXI	GCAGC	2 cut(s)	55, 424
BseYI	CCCAGC	1 cut(s)	356
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	4 cut(s)	151, 520, 793, 939
BsmAI	GTCTC	3 cut(s)	370, 402, 594
BsmBI	CGTCTC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	564, 687
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	3 cut(s)	50, 759, 885
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	380
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	1 cut(s)	682
BspQI	GCTCTTC	1 cut(s)	917
BsrBI	CCGCTC	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	5 cut(s)	285, 447, 596, 831, 865
BssECI	CCNNGG	2 cut(s)	75, 811
BssMI	GATC	2 cut(s)	564, 687
BssT1I	CCWWGG	2 cut(s)	75, 811
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	4 cut(s)	138, 597, 917, 932
BstC8I	GCNNGC	2 cut(s)	883, 929
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	567, 690
BstMAI	GTCTC	3 cut(s)	370, 402, 594
BstMBI	GATC	2 cut(s)	564, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 269
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	197, 240
BstSFI	CTRYAG	2 cut(s)	417, 621
BstV1I	GCAGC	2 cut(s)	55, 424
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	952
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	3 cut(s)	138, 222, 440
Cac8I	GCNNGC	2 cut(s)	883, 929
CsiI	ACCWGGT	1 cut(s)	197
Csp6I	GTAC	4 cut(s)	115, 511, 571, 744
CviAII	CATG	6 cut(s)	76, 310, 478, 508, 568, 733
CviQI	GTAC	4 cut(s)	115, 511, 571, 744
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	2 cut(s)	566, 689
DpnII	GATC	2 cut(s)	564, 687
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	4 cut(s)	138, 597, 917, 932
EarI	CTCTTC	4 cut(s)	138, 597, 917, 932
EciI	GGCGGA	1 cut(s)	900
Eco130I	CCWWGG	2 cut(s)	75, 811
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	2 cut(s)	75, 811
ErhI	CCWWGG	2 cut(s)	75, 811
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	6 cut(s)	79, 313, 481, 511, 571, 736
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	6 cut(s)	75, 309, 477, 507, 567, 732
Fnu4HI	GCNGC	3 cut(s)	51, 69, 438
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	3 cut(s)	51, 69, 438
FspBI	CTAG	1 cut(s)	866
GluI	GCNGC	3 cut(s)	51, 69, 438
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	6 cut(s)	79, 313, 481, 511, 571, 736
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HinfI	GANTC	3 cut(s)	130, 330, 783
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	2 cut(s)	852, 949
Hpy188III	TCNNGA	4 cut(s)	14, 204, 369, 502
Hpy8I	GTNNAC	1 cut(s)	754
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	174, 951
HpyCH4V	TGCA	8 cut(s)	20, 227, 320, 419, 440, 659, 838, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 269
HpyF3I	CTNAG	1 cut(s)	367
HpySE526I	ACGT	2 cut(s)	174, 951
Hsp92II	CATG	6 cut(s)	79, 313, 481, 511, 571, 736
Kzo9I	GATC	2 cut(s)	564, 687
LguI	GCTCTTC	1 cut(s)	917
Lsp1109I	GCAGC	2 cut(s)	55, 424
LweI	GCATC	1 cut(s)	7
MabI	ACCWGGT	1 cut(s)	197
MaeI	CTAG	1 cut(s)	866
MaeII	ACGT	2 cut(s)	174, 951
MaeIII	GTNAC	1 cut(s)	856
MalI	GATC	2 cut(s)	566, 689
MbiI	CCGCTC	1 cut(s)	761
MboI	GATC	2 cut(s)	564, 687
MboII	GAAGA	5 cut(s)	125, 195, 584, 934, 949
MfeI	CAATTG	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	6 cut(s)	33, 149, 629, 637, 654, 667
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	124, 324, 792
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	6 cut(s)	200, 348, 416, 535, 933, 949
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	1 cut(s)	300
MslI	CAYNNNNRTG	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	881
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	199, 242
MunI	CAATTG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	77, 269
NciI	CCSGG	1 cut(s)	242
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	564, 687
NlaIII	CATG	6 cut(s)	79, 313, 481, 511, 571, 736
NmuCI	GTSAC	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	917
PflMI	CCANNNNNTGG	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	52, 70, 439
PleI	GAGTC	3 cut(s)	124, 324, 791
PpsI	GAGTC	3 cut(s)	124, 324, 791
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	197
PstI	CTGCAG	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	4 cut(s)	116, 512, 572, 745
RsaNI	GTAC	4 cut(s)	115, 511, 571, 744
RseI	CAYNNNNRTG	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	51, 69, 438
Sau3AI	GATC	2 cut(s)	564, 687
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	3 cut(s)	124, 324, 792
ScrFI	CCNGG	2 cut(s)	199, 242
SduI	GDGCHC	1 cut(s)	224
SexAI	ACCWGGT	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	7
SfcI	CTRYAG	2 cut(s)	417, 621
SmiMI	CAYNNNNRTG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	865
Sse9I	AATT	6 cut(s)	33, 149, 629, 637, 654, 667
SsiI	CCGC	3 cut(s)	50, 759, 885
SspI	AATATT	2 cut(s)	304, 411
SspMI	CTAG	1 cut(s)	866
StyD4I	CCNGG	2 cut(s)	197, 240
StyI	CCWWGG	2 cut(s)	75, 811
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	177, 954
TaqI	TCGA	1 cut(s)	181
TasI	AATT	6 cut(s)	33, 149, 629, 637, 654, 667
TatI	WGTACW	2 cut(s)	114, 570
TauI	GCSGC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	3 cut(s)	145, 229, 447
TseFI	GTSAC	1 cut(s)	856
TseI	GCWGC	2 cut(s)	68, 437
Tsp45I	GTSAC	1 cut(s)	856
TspDTI	ATGAA	2 cut(s)	690, 888
TspRI	CASTG	3 cut(s)	145, 229, 447
Van91I	CCANNNNNTGG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	629, 637
XspI	CTAG	1 cut(s)	866
ZrmI	AGTACT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.