Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Reverse (-)

63628969 .. 63632943

Gene Structure 3975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG450300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGATAAACTCACTGATGCAGAAGCTGCCAGTCCTTCTTTGAGTTTATTTGCTGCATTGTCATATGGGGCTGCTTCCATGGCTATGGTTTTCATCAATAAAGCTGTTCTTATGGAGTACTCCCATTCAATGACACTTCTCACCATGCAGCAATTGGCCACTGCTTTGCTTATACATTTTGGTCGAAGAATGGGATACACGAGATCGAGAGGACTAGAAATGAGCACTGCCAAGAAACTTCTCCCCGTGTCGCTTTTCTATAATGCTAATGTCGCATTTGCTTTGGCCAGTCTGAAGGGAGTCAATATTCCCATGTACATTGCAATCAAAAGACTCACACCGCTTGCTGTGCTTATCGCTGGATTCTTCTCTGGAAAGGGGAAACCCTCAATACAGGTGATTCTTTCAGTGATATTGACTGCTGGAGGGGTTGTCATAGCAGCACTAGGAGACTTTTCATTTGATCTTTTTGGATATAGCTTGGCCTTGACTTCAGTTTTTTTCCAGACCATGTACCTTGTGCTAGTGGAGAAGTCTGGTGCAGAGGATGGGCTATCATCAGTTGAGATCATGTTCTATAACAGCTTTCTGTCTCTTCCATTTTTGCTATTTCTCATTATAGCTACCGGAGAATTTCCAAATTCTTTCTCATTACTACTTGTAAAGGTAAGAACTTACCCTTTTGGTGTATATGTATTTTCATTCTTGATAATTTGGAAACACCAGATGCTTGACTGGTTAAATTTCAACCCTATCTCTTATAAAGTAGTCAGGAAACTGATTACTGACTTTGAAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

266

Amino Acids

29.38

Weight (kDa)

9.3

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	24 - 219	1.6e-14	Triose-phosphate Transporter family
UAA	PF08449	34 - 217	3.1e-08	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AciI	CCGC	1 cut(s)	341
AcoI	YGGCCR	2 cut(s)	156, 285
AcsI	RAATTY	3 cut(s)	632, 640, 742
AcuI	CTGAAG	2 cut(s)	314, 477
AfaI	GTAC	3 cut(s)	119, 317, 515
AgsI	TTSAA	3 cut(s)	129, 748, 794
AluBI	AGCT	5 cut(s)	26, 104, 480, 585, 623
AluI	AGCT	5 cut(s)	26, 104, 480, 585, 623
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	444, 597
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	3 cut(s)	156, 285, 483
ApeKI	GCWGC	5 cut(s)	26, 53, 71, 148, 440
ApoI	RAATTY	3 cut(s)	632, 640, 742
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AsuHPI	GGTGA	2 cut(s)	133, 409
BalI	TGGCCA	2 cut(s)	158, 287
BauI	CACGAG	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	5 cut(s)	13, 40, 58, 160, 452
BccI	CCATC	1 cut(s)	542
BciVI	GTATCC	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	444, 597
BfaI	CTAG	4 cut(s)	215, 446, 524, 799
BfuI	GTATCC	1 cut(s)	188
BisI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
BlsI	GCNGC	5 cut(s)	28, 55, 73, 150, 442
BmcAI	AGTACT	1 cut(s)	119
BmsI	GCATC	2 cut(s)	7, 717
BpmI	CTGGAG	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	626
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bse1I	ACTGG	3 cut(s)	30, 288, 740
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	30, 288, 740
BseXI	GCAGC	5 cut(s)	13, 40, 58, 160, 452
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	3 cut(s)	158, 287, 485
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	444, 597
BsnI	GGCC	3 cut(s)	158, 287, 485
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	203, 463, 567
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	3 cut(s)	158, 287, 485
BsrDI	GCAATG	1 cut(s)	318
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	30, 288, 740
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	3 cut(s)	203, 463, 567
BssSI	CACGAG	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	78
Bst2BI	CACGAG	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	600
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	3 cut(s)	206, 466, 570
BstMAI	GTCTC	2 cut(s)	444, 597
BstMBI	GATC	3 cut(s)	203, 463, 567
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 80, 272, 349
BstV1I	GCAGC	5 cut(s)	13, 40, 58, 160, 452
BstXI	CCANNNNNNTGG	1 cut(s)	85
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	158, 287, 485
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	2 cut(s)	159, 225
BtsIMutI	CAGTG	4 cut(s)	12, 159, 225, 414
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	118, 316, 514
CviAII	CATG	5 cut(s)	79, 145, 313, 511, 571
CviQI	GTAC	3 cut(s)	118, 316, 514
DpnI	GATC	3 cut(s)	205, 465, 569
DpnII	GATC	3 cut(s)	203, 463, 567
EaeI	YGGCCR	2 cut(s)	156, 285
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	314, 477
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	5 cut(s)	82, 148, 316, 514, 574
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	5 cut(s)	78, 144, 312, 510, 570
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
FspBI	CTAG	4 cut(s)	215, 446, 524, 799
GluI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
GsuI	CTGGAG	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	158, 287, 485
HapII	CCGG	1 cut(s)	627
Hin1II	CATG	5 cut(s)	82, 148, 316, 514, 574
HinfI	GANTC	4 cut(s)	300, 333, 363, 400
HpaII	CCGG	1 cut(s)	627
HphI	GGTGA	2 cut(s)	133, 409
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	5 cut(s)	207, 372, 505, 706, 772
HpyAV	CCTTC	2 cut(s)	45, 289
HpyCH4V	TGCA	5 cut(s)	20, 56, 148, 323, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 80, 272, 349
Hsp92II	CATG	5 cut(s)	82, 148, 316, 514, 574
Kzo9I	GATC	3 cut(s)	203, 463, 567
Lsp1109I	GCAGC	5 cut(s)	13, 40, 58, 160, 452
LweI	GCATC	2 cut(s)	7, 717
MaeI	CTAG	4 cut(s)	215, 446, 524, 799
MalI	GATC	3 cut(s)	205, 465, 569
MboI	GATC	3 cut(s)	203, 463, 567
MboII	GAAGA	3 cut(s)	198, 358, 587
MfeI	CAATTG	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	227
MlsI	TGGCCA	2 cut(s)	158, 287
MluCI	AATT	5 cut(s)	152, 632, 640, 711, 742
MluNI	TGGCCA	2 cut(s)	158, 287
MlyI	GAGTC	2 cut(s)	309, 327
MnlI	CCTC	4 cut(s)	203, 397, 419, 538
Mox20I	TGGCCA	2 cut(s)	158, 287
MscI	TGGCCA	2 cut(s)	158, 287
MseI	TTAA	1 cut(s)	740
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	2 cut(s)	158, 287
MspI	CCGG	1 cut(s)	627
MunI	CAATTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	26, 80, 272, 349
NcoI	CCATGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	3 cut(s)	203, 463, 567
NlaIII	CATG	5 cut(s)	82, 148, 316, 514, 574
PfeI	GAWTC	2 cut(s)	363, 400
PkrI	GCNGC	5 cut(s)	28, 55, 73, 150, 442
PleI	GAGTC	2 cut(s)	308, 327
PpsI	GAGTC	2 cut(s)	308, 327
PsiI	TTATAA	1 cut(s)	762
PstNI	CAGNNNCTG	1 cut(s)	26
RsaI	GTAC	3 cut(s)	119, 317, 515
RsaNI	GTAC	3 cut(s)	118, 316, 514
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	740
SatI	GCNGC	5 cut(s)	27, 54, 72, 149, 441
Sau3AI	GATC	3 cut(s)	203, 463, 567
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	2 cut(s)	309, 327
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	9 cut(s)	28, 106, 399, 482, 519, 587, 625, 669, 800
SfaNI	GCATC	2 cut(s)	7, 717
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	152, 632, 640, 711, 742
SsiI	CCGC	1 cut(s)	341
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	4 cut(s)	215, 446, 524, 799
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	2 cut(s)	184, 206
TasI	AATT	5 cut(s)	152, 632, 640, 711, 742
TatI	WGTACW	2 cut(s)	117, 315
TfiI	GAWTC	2 cut(s)	363, 400
Tru1I	TTAA	1 cut(s)	740
Tru9I	TTAA	1 cut(s)	740
TscAI	CASTG	4 cut(s)	19, 166, 232, 414
TseI	GCWGC	5 cut(s)	26, 53, 71, 148, 440
TspDTI	ATGAA	3 cut(s)	82, 447, 690
TspRI	CASTG	4 cut(s)	19, 166, 232, 414
XapI	RAATTY	3 cut(s)	632, 640, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XspI	CTAG	4 cut(s)	215, 446, 524, 799
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.