Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Forward (+)

11850274 .. 11866687

Gene Structure 16414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1126100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCATGGAGAAACGTATTGAGACAGAAGCTAGCTCGTTTTTGAGTTTGTCTGCGGCCTTGTCGTATGGGGCTGCTTCCATGGCAATGGTTTTTATCAATAAAGCAGTTATTATGGAGTACTCACATTCAATGACCCTTCTCACAATGCAGCAATTGGCAACTGCTTTGCTTATACATGTTGGTCGAAGATTGGGATACACGAGATCAAGAGGACTAGAAATGTCCACCGCGAAAAAACTTCTCCCTGTGTCGCTTTTCTATAATGCTAATGTGGCGTTTGCTTTGGCCAGTTTAAAGGGAGTTAACATTCCCATGTATATTGCAATCAAAAGGCTCACACCGCTTGCTGTGCTTGTAGCTGGATTCTTCTCAGGGAAGGGGAGACCCCCAATACAGGTGTGTCTTTCAGTATTATTGACTGCAGTAGGGGTTCTGATAGCTGCACTTGGAGATTTTTCATTTGACCTTTTTGGATATAGCATGGCCCTTACTTCTGTTTTTTTCCAGACCATGTACCTTGTGTTGGTGGAGCAATCTGGTGCGGAAGATGGGCTATCATCAGTTGAGATCATGTACTATAACAGCTTTCTGTCTCTTCCGTTTTTTATGCTTCTCATTGTAGCTACAGGAGAATTTCCAAATTCTTTATCATTACTAATTGCAAAGAGTAATTCCTTATATTTTCTGGTGATCCTCATTCTTTCATTTATTATGGGCATTGCTCTCAACTTCACCATGTTCTTATGTACGATAGTCAACTCCGCTCTAACAACAACCATCGTTGGAGTCCTAAAAGGGGTTGGGTCCACGACCCTTGGTTTTGTACTACTGGGTGGCATGCAAGTACATGTTTTGAATGTAACTGGACTGGTTATCAACACAGCTGGCGGAGTTTGGTATTCGTTTGCCAAATATCAACAGAGGAAGAGCAAGCCCGCAATGCGGATTGCAGATGTGGAGGCTTATCGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

326

Amino Acids

35.24

Weight (kDa)

9.52

Isoelectric Point (pI)

29.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	26 - 302	1.9e-12	Triose-phosphate Transporter family
UAA	PF08449	44 - 268	1.5e-07	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	767
AccII	CGCG	1 cut(s)	233
AciI	CCGC	8 cut(s)	56, 231, 344, 545, 765, 891, 939, 946
AclWI	GGATC	1 cut(s)	688
AcoI	YGGCCR	2 cut(s)	3, 288
AcsI	RAATTY	2 cut(s)	635, 643
AfaI	GTAC	6 cut(s)	122, 518, 578, 751, 828, 849
AfiI	CCNNNNNNNGG	4 cut(s)	397, 526, 799, 945
AflIII	ACRYGT	2 cut(s)	178, 850
AgsI	TTSAA	2 cut(s)	132, 859
AluBI	AGCT	7 cut(s)	32, 36, 362, 443, 588, 626, 887
AluI	AGCT	7 cut(s)	32, 36, 362, 443, 588, 626, 887
Alw26I	GTCTC	3 cut(s)	17, 379, 600
AlwI	GGATC	1 cut(s)	688
AoxI	GGCC	4 cut(s)	3, 57, 288, 486
ApeKI	GCWGC	3 cut(s)	74, 151, 443
ApoI	RAATTY	2 cut(s)	635, 643
AspS9I	GGNCC	2 cut(s)	487, 807
AsuHPI	GGTGA	2 cut(s)	703, 727
AsuNHI	GCTAGC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	807
BalI	TGGCCA	2 cut(s)	5, 290
BauI	CACGAG	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	61, 163, 430
BccI	CCATC	2 cut(s)	545, 788
BciVI	GTATCC	1 cut(s)	191
BcoDI	GTCTC	3 cut(s)	17, 379, 600
BfaI	CTAG	2 cut(s)	33, 218
BfmI	CTRYAG	2 cut(s)	423, 627
BfuI	GTATCC	1 cut(s)	191
BisI	GCNGC	4 cut(s)	57, 75, 152, 444
BlsI	GCNGC	4 cut(s)	58, 76, 153, 445
BmcAI	AGTACT	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	2 cut(s)	487, 807
BmiI	GGNNCC	1 cut(s)	808
BmrI	ACTGGG	1 cut(s)	842
BmtI	GCTAGC	1 cut(s)	36
BmuI	ACTGGG	1 cut(s)	842
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	6, 81, 817
Bsc4I	CCNNNNNNNGG	4 cut(s)	397, 526, 799, 945
Bse1I	ACTGG	4 cut(s)	291, 837, 871, 876
Bse3DI	GCAATG	3 cut(s)	93, 720, 948
BseDI	CCNNGG	3 cut(s)	6, 81, 817
BseLI	CCNNNNNNNGG	4 cut(s)	397, 526, 799, 945
BseMI	GCAATG	3 cut(s)	93, 720, 948
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	4 cut(s)	291, 837, 871, 876
BseXI	GCAGC	3 cut(s)	61, 163, 430
BsgI	GTGCAG	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	233
BshFI	GGCC	4 cut(s)	5, 59, 290, 488
BslI	CCNNNNNNNGG	4 cut(s)	397, 526, 799, 945
BsmAI	GTCTC	3 cut(s)	17, 379, 600
BsnI	GGCC	4 cut(s)	5, 59, 290, 488
Bso31I	GGTCTC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	206, 570, 693
Bsp19I	CCATGG	2 cut(s)	6, 81
BspACI	CCGC	8 cut(s)	56, 231, 344, 545, 765, 891, 939, 946
BspANI	GGCC	4 cut(s)	5, 59, 290, 488
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	1 cut(s)	233
BspLI	GGNNCC	1 cut(s)	808
BspMAI	CTGCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	36
BspPI	GGATC	1 cut(s)	688
BspQI	GCTCTTC	1 cut(s)	923
BspTNI	GGTCTC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	767
BsrDI	GCAATG	3 cut(s)	93, 720, 948
BsrI	ACTGG	4 cut(s)	291, 837, 871, 876
BssECI	CCNNGG	3 cut(s)	6, 81, 817
BssMI	GATC	3 cut(s)	206, 570, 693
BssSI	CACGAG	1 cut(s)	202
BssT1I	CCWWGG	3 cut(s)	6, 81, 817
Bst2BI	CACGAG	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	603, 923
BstC8I	GCNNGC	6 cut(s)	34, 348, 842, 889, 935, 939
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	2 cut(s)	6, 81
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	3 cut(s)	209, 573, 696
BstMAI	GTCTC	3 cut(s)	17, 379, 600
BstMBI	GATC	3 cut(s)	206, 570, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 275, 343, 352, 943
BstNSI	RCATGY	3 cut(s)	182, 844, 854
BstSFI	CTRYAG	2 cut(s)	423, 627
BstUI	CGCG	1 cut(s)	233
BstV1I	GCAGC	3 cut(s)	61, 163, 430
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	4 cut(s)	5, 59, 290, 488
BtgI	CCRYGG	2 cut(s)	6, 81
Cac8I	GCNNGC	6 cut(s)	34, 348, 842, 889, 935, 939
Cfr13I	GGNCC	2 cut(s)	487, 807
Csp6I	GTAC	6 cut(s)	121, 517, 577, 750, 827, 848
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviQI	GTAC	6 cut(s)	121, 517, 577, 750, 827, 848
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	3 cut(s)	208, 572, 695
DpnII	GATC	3 cut(s)	206, 570, 693
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	3, 288
Eam1104I	CTCTTC	2 cut(s)	603, 923
EarI	CTCTTC	2 cut(s)	603, 923
EciI	GGCGGA	1 cut(s)	906
Eco130I	CCWWGG	3 cut(s)	6, 81, 817
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	807
EcoT14I	CCWWGG	3 cut(s)	6, 81, 817
ErhI	CCWWGG	3 cut(s)	6, 81, 817
FauI	CCCGC	1 cut(s)	946
Fnu4HI	GCNGC	4 cut(s)	57, 75, 152, 444
Fsp4HI	GCNGC	4 cut(s)	57, 75, 152, 444
FspBI	CTAG	2 cut(s)	33, 218
GluI	GCNGC	4 cut(s)	57, 75, 152, 444
HaeIII	GGCC	4 cut(s)	5, 59, 290, 488
HincII	GTYRAC	2 cut(s)	307, 760
HindII	GTYRAC	2 cut(s)	307, 760
HinfI	GANTC	2 cut(s)	366, 789
HpaI	GTTAAC	1 cut(s)	307
HphI	GGTGA	2 cut(s)	703, 727
Hpy166II	GTNNAC	4 cut(s)	228, 307, 760, 810
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	2 cut(s)	210, 508
Hpy8I	GTNNAC	4 cut(s)	228, 307, 760, 810
HpyAV	CCTTC	2 cut(s)	149, 373
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	7 cut(s)	151, 326, 425, 446, 665, 844, 953
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 275, 343, 352, 943
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	206, 570, 693
LguI	GCTCTTC	1 cut(s)	923
LmnI	GCTCC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	61, 163, 430
MaeI	CTAG	2 cut(s)	33, 218
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	862
MalI	GATC	3 cut(s)	208, 572, 695
MbiI	CCGCTC	1 cut(s)	767
MboI	GATC	3 cut(s)	206, 570, 693
MboII	GAAGA	5 cut(s)	201, 361, 560, 590, 940
MfeI	CAATTG	1 cut(s)	155
MlsI	TGGCCA	2 cut(s)	5, 290
MluCI	AATT	5 cut(s)	155, 635, 643, 660, 673
MluNI	TGGCCA	2 cut(s)	5, 290
MlyI	GAGTC	1 cut(s)	798
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	4 cut(s)	206, 707, 918, 955
Mox20I	TGGCCA	2 cut(s)	5, 290
MscI	TGGCCA	2 cut(s)	5, 290
MseI	TTAA	2 cut(s)	296, 306
MslI	CAYNNNNRTG	2 cut(s)	86, 314
Msp20I	TGGCCA	2 cut(s)	5, 290
MspA1I	CMGCKG	1 cut(s)	887
MunI	CAATTG	1 cut(s)	155
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	5 cut(s)	83, 275, 343, 352, 943
NcoI	CCATGG	2 cut(s)	6, 81
NdeII	GATC	3 cut(s)	206, 570, 693
NheI	GCTAGC	1 cut(s)	32
NlaIV	GGNNCC	1 cut(s)	808
NspI	RCATGY	3 cut(s)	182, 844, 854
PaeI	GCATGC	1 cut(s)	844
PciI	ACATGT	2 cut(s)	178, 850
PciSI	GCTCTTC	1 cut(s)	923
PfeI	GAWTC	1 cut(s)	366
PkrI	GCNGC	4 cut(s)	58, 76, 153, 445
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PscI	ACATGT	2 cut(s)	178, 850
PspN4I	GGNNCC	1 cut(s)	808
PspPI	GGNCC	2 cut(s)	487, 807
PstI	CTGCAG	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	6 cut(s)	122, 518, 578, 751, 828, 849
RsaNI	GTAC	6 cut(s)	121, 517, 577, 750, 827, 848
RseI	CAYNNNNRTG	2 cut(s)	86, 314
SapI	GCTCTTC	1 cut(s)	923
SaqAI	TTAA	2 cut(s)	296, 306
SatI	GCNGC	4 cut(s)	57, 75, 152, 444
Sau3AI	GATC	3 cut(s)	206, 570, 693
Sau96I	GGNCC	2 cut(s)	487, 807
ScaI	AGTACT	1 cut(s)	122
SchI	GAGTC	1 cut(s)	798
SfcI	CTRYAG	2 cut(s)	423, 627
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	2 cut(s)	86, 314
SphI	GCATGC	1 cut(s)	844
Sse9I	AATT	5 cut(s)	155, 635, 643, 660, 673
SsiI	CCGC	8 cut(s)	56, 231, 344, 545, 765, 891, 939, 946
SspMI	CTAG	2 cut(s)	33, 218
StyI	CCWWGG	3 cut(s)	6, 81, 817
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	187
TasI	AATT	5 cut(s)	155, 635, 643, 660, 673
TatI	WGTACW	4 cut(s)	120, 576, 826, 847
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	2 cut(s)	296, 306
Tru9I	TTAA	2 cut(s)	296, 306
TseI	GCWGC	3 cut(s)	74, 151, 443
TspDTI	ATGAA	2 cut(s)	450, 696
TspGWI	ACGGA	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	2 cut(s)	635, 643
XceI	RCATGY	3 cut(s)	182, 844, 854
XspI	CTAG	2 cut(s)	33, 218
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.