Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009562

Physical Location & Seq

Genomic Coordinates Forward (+)

8771273 .. 8772434

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g10530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTATATTGCAATCAAGAGGCTCACACCGCTTGCTGTGCTTGTAGCTGGATTCTTCTCAGGGAAGGGGAGACCCCCAATACAGGTGTGTCTTTCAGTAATATTGACTGCAGTAGGGGTTCTGATAGCTGCACTCGGAGATTTTTCATTTGACCTTTTTGGATATAGCATGGCCCTTACTTCTGTTTTTTTTCCAGACCATGTACCTTGTGTTGGTGGAGAAATCTGGGCTGAAGATGGGCTATCATCAGTTGAGATCGATGTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0021700 GO:0022622 GO:0022857 GO:0030154 GO:0032501 GO:0032502 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0055085 GO:0071695 GO:0071702 GO:0071705 GO:0072334 GO:0080147 GO:0090481 GO:0090558 GO:0090627 GO:0090696 GO:0098656 GO:0099402 GO:1901264 GO:1901505 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

90

Amino Acids

9.43

Weight (kDa)

4.45

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009562)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31600 AT4G31600
fragaria_vesca	FvH4_2g36601 FvH4_2g36601 FvH4_2g36601
malus_domestica	MD08G1126100.v1.1 MD15G1105900.v1.1
prunus_persica	Prupe.1G457700_v2.0.a1
pyrus_communis	pycom08g10530 pycom15g09610
rosa_chinensis	RchiOBHm_Chr6g0305211
rosa_laevigata	RLG00000010908
rosa_multiflora	Rmu_sc0000061.1_g000005
rosa_roxburghii	Rroxscaffold_7G00163040
rosa_rugosa	Rorug06G0338600 Rorug06G0338600 Rorug06G0338600
rosa_samantha	Rh6AG450300 Rh6BG451100 Rh6CG464100 Rh6DG450900
rosa_wichuraiana	Rw6G039240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	204, 264
AfiI	CCNNNNNNNGG	2 cut(s)	82, 212
AluBI	AGCT	2 cut(s)	47, 128
AluI	AGCT	2 cut(s)	47, 128
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	172
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	64
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 212
BseCI	ATCGAT	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	82, 212
BseMII	CTCAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	173
BshVI	ATCGAT	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	82, 212
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	258
BspMAI	CTGCAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	64
BssMI	GATC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 37
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	173
BsuTUI	ATCGAT	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	33
Cfr13I	GGNCC	1 cut(s)	172
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	203, 263
CviAII	CATG	2 cut(s)	169, 200
CviJI	RGCY	6 cut(s)	22, 47, 128, 173, 230, 241
CviKI_1	RGCY	6 cut(s)	22, 47, 128, 173, 230, 241
CviQI	GTAC	2 cut(s)	203, 263
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	252
FaeI	CATG	2 cut(s)	172, 203
FaiI	YATR	5 cut(s)	6, 165, 170, 201, 268
FatI	CATG	2 cut(s)	168, 199
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	172, 203
HinfI	GANTC	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	123, 137
Hpy188III	TCNNGA	2 cut(s)	16, 194
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	11, 110, 131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 37
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	172, 203
Kzo9I	GATC	1 cut(s)	255
LpnPI	CCDG	5 cut(s)	33, 45, 68, 207, 211
Lsp1109I	GCAGC	1 cut(s)	115
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	2 cut(s)	46, 245
MnlI	CCTC	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	28, 37
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	2 cut(s)	172, 203
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	2 cut(s)	204, 264
RsaNI	GTAC	2 cut(s)	203, 263
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	172
SetI	ASST	5 cut(s)	49, 87, 130, 156, 208
SfcI	CTRYAG	1 cut(s)	108
SsiI	CCGC	1 cut(s)	29
SspI	AATATT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	258
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	51
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.