AT4G32272

Triose-phosphate Transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015344
Physical Location & Seq
Reverse (-)
15576763 .. 15579896
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32272.2

Sequence Viewer

Length: 1035 bp
ATGAGGAATAATCCTGTCCTTCCGGTTTCCGATCCTCCCCTCGCCGGTGAGAATGATAGCGATGGTAAAGGTGTCGATGATCGGCTTTTCAAAGGATCTGCCATGACCAAACGTGGAGCTTATGCTGCTCTTTCTTACATGGCTTGTGCTGTTATGCTTGTGCTGTTCAATAAAGCAGCTCTGTCTTCCTATGATTTTCCGTGTGTGAACGTTATCACGCTATTCCAGATGGTTTCCTCTAGCTTATTTCTATATGCTTTGAGGCGCAGGAAGATCATCTCTTTCACAGCTGCTGATTCTTTTTCTATTGATAGTGCCTCAACCTTTGTGCCAGTGAAGACATTGTTTCACACCCTTCCTCTAGCAATAGCATATCTTTTGTACATGCTAGCCTCTATGGCATCTGTTAGAGGGGTAAATGTTCCCATGTATACCACGCTTAGGCGTACTACTGTGGCATTTACTATGGTGATTGAGTACATGCTCACAGGTCAGAGATATACACGGTCTATCATTGGAAGTGTTGGTATTATCTTGCTTGGCGCATTTTTTGCTGGAGCTAGGGACTTGTCATTTGACTTTTATGGATATGGTGTTGTTTTCTTAGCCAACATATCAACAGCAGTATATCTAGCAACCATTGCCCGTACTGGTAAATCAAGTGGCTTGAATAGCTTTGGCCTTATGTGGTCCAATGGAATTATATGCGGACCTATATTGATGATTTGGACATTTATTTGCGGTGACTTGGAGAAGACAATTAACTTTCCTCACCTCTTAACTCCTGGTTTCATGGTTGTATTACTCTGCTCGTGCGTGCTGGCTTTCGTCTTAAACTACTGCATTTTCCTTAACACCACTCTCAATTCAGCTTTGACGCAGACAATTTGTGGCAATATGAAGGATCTATTCACGGTTGGACTAGGCTGGATGCTCTTTGGAGGACTCCCATTCGACCTGATGAATGTGATTGGACAGCTTTTTGGTTTCTTCGGGTCAGGTTTATATGCATATTATAAGATCATCGGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

344

Amino Acids

37.64

Weight (kDa)

9.06

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 64 - 351 6e-12 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1017
AccI GTMKAC 1 cut(s) 431
AciI CCGC 2 cut(s) 708, 741
AclI AACGTT 1 cut(s) 210
AclWI GGATC 3 cut(s) 26, 103, 912
AfaI GTAC 4 cut(s) 383, 448, 479, 649
AfiI CCNNNNNNNGG 2 cut(s) 44, 441
AgsI TTSAA 3 cut(s) 91, 169, 670
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 8 cut(s) 119, 179, 243, 290, 560, 675, 872, 979
AluI AGCT 8 cut(s) 119, 179, 243, 290, 560, 675, 872, 979
AlwI GGATC 3 cut(s) 26, 103, 912
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 1 cut(s) 679
ApeKI GCWGC 3 cut(s) 125, 176, 290
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AspLEI GCGC 2 cut(s) 267, 545
AspS9I GGNCC 2 cut(s) 690, 710
AsuHPI GGTGA 4 cut(s) 59, 481, 755, 764
AsuNHI GCTAGC 1 cut(s) 388
AvaII GGWCC 2 cut(s) 690, 710
BauI CACGAG 1 cut(s) 811
BbsI GAAGAC 3 cut(s) 177, 344, 761
BbvI GCAGC 3 cut(s) 112, 188, 277
BccI CCATC 2 cut(s) 56, 223
BciT130I CCWGG 1 cut(s) 786
BfaI CTAG 6 cut(s) 240, 362, 389, 561, 632, 923
BglI GCCNNNNNGGC 1 cut(s) 398
BisI GCNGC 3 cut(s) 126, 177, 291
BlsI GCNGC 3 cut(s) 127, 178, 292
Bme1390I CCNGG 1 cut(s) 786
Bme18I GGWCC 2 cut(s) 690, 710
BmgT120I GGNCC 2 cut(s) 690, 710
BmrFI CCNGG 1 cut(s) 786
BmsI GCATC 2 cut(s) 410, 921
BmtI GCTAGC 1 cut(s) 392
BpiI GAAGAC 3 cut(s) 177, 344, 761
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 440
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 441
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 2 cut(s) 332, 655
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 786
BseGI GGATG 1 cut(s) 936
BseLI CCNNNNNNNGG 2 cut(s) 44, 441
BseMI GCAATG 1 cut(s) 639
BseNI ACTGG 2 cut(s) 332, 655
BseXI GCAGC 3 cut(s) 112, 188, 277
BshFI GGCC 1 cut(s) 681
BsiSI CCGG 2 cut(s) 23, 45
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 2 cut(s) 44, 441
BsmFI GGGAC 1 cut(s) 578
BsnI GGCC 1 cut(s) 681
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
BspACI CCGC 2 cut(s) 708, 741
BspANI GGCC 1 cut(s) 681
BspOI GCTAGC 1 cut(s) 392
BspPI GGATC 3 cut(s) 26, 103, 912
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 44
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 2 cut(s) 332, 655
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
BssNAI GTATAC 1 cut(s) 432
BssSI CACGAG 1 cut(s) 811
Bst1107I GTATAC 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 811
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 3 cut(s) 454, 507, 916
BstAPI GCANNNNNTGC 2 cut(s) 551, 641
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 390, 818, 822
BstDEI CTNAG 2 cut(s) 440, 604
BstF5I GGATG 1 cut(s) 936
BstHHI GCGC 2 cut(s) 267, 545
BstKTI GATC 6 cut(s) 34, 82, 98, 276, 907, 1023
BstMBI GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 125, 398, 551, 641, 672
BstNI CCWGG 1 cut(s) 786
BstNSI RCATGY 2 cut(s) 388, 484
BstSCI CCNGG 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 112, 188, 277
BstV2I GAAGAC 3 cut(s) 177, 344, 761
BstX2I RGATCY 2 cut(s) 95, 904
BstYI RGATCY 2 cut(s) 95, 904
BstZ17I GTATAC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 681
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 936
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 390, 818, 822
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 2 cut(s) 267, 545
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 690, 710
CseI GACGC 1 cut(s) 886
Csp6I GTAC 4 cut(s) 382, 447, 478, 648
CviAII CATG 6 cut(s) 103, 139, 385, 427, 481, 793
CviQI GTAC 4 cut(s) 382, 447, 478, 648
DdeI CTNAG 2 cut(s) 440, 604
DpnI GATC 6 cut(s) 33, 81, 97, 275, 906, 1022
DpnII GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
Eco47I GGWCC 2 cut(s) 690, 710
EcoRII CCWGG 1 cut(s) 784
EcoT22I ATGCAT 1 cut(s) 1012
FaeI CATG 6 cut(s) 106, 142, 388, 430, 484, 796
FaqI GGGAC 1 cut(s) 578
FatI CATG 6 cut(s) 102, 138, 384, 426, 480, 792
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 126, 177, 291
FokI GGATG 1 cut(s) 943
Fsp4HI GCNGC 3 cut(s) 126, 177, 291
FspBI CTAG 6 cut(s) 240, 362, 389, 561, 632, 923
GlaI GCGC 2 cut(s) 266, 544
GluI GCNGC 3 cut(s) 126, 177, 291
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 1 cut(s) 681
HapII CCGG 2 cut(s) 23, 45
HgaI GACGC 1 cut(s) 886
HhaI GCGC 2 cut(s) 267, 545
Hin1II CATG 6 cut(s) 106, 142, 388, 430, 484, 796
Hin6I GCGC 2 cut(s) 265, 543
HinP1I GCGC 2 cut(s) 265, 543
HinfI GANTC 2 cut(s) 296, 945
HpaII CCGG 2 cut(s) 23, 45
HphI GGTGA 4 cut(s) 59, 481, 755, 764
Hpy166II GTNNAC 2 cut(s) 208, 432
Hpy188I TCNGA 2 cut(s) 31, 495
Hpy188III TCNNGA 2 cut(s) 226, 1027
Hpy8I GTNNAC 2 cut(s) 208, 432
HpyAV CCTTC 3 cut(s) 29, 365, 895
HpyCH4III ACNGT 3 cut(s) 454, 507, 916
HpyCH4IV ACGT 2 cut(s) 112, 210
HpyCH4V TGCA 2 cut(s) 843, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 398, 551, 641, 672
HpyF3I CTNAG 2 cut(s) 440, 604
HpySE526I ACGT 2 cut(s) 112, 210
Hsp92II CATG 6 cut(s) 106, 142, 388, 430, 484, 796
HspAI GCGC 2 cut(s) 265, 543
Kzo9I GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
LmnI GCTCC 2 cut(s) 116, 557
Lsp1109I GCAGC 3 cut(s) 112, 188, 277
LweI GCATC 2 cut(s) 410, 921
MaeI CTAG 6 cut(s) 240, 362, 389, 561, 632, 923
MaeII ACGT 2 cut(s) 112, 210
MaeIII GTNAC 1 cut(s) 743
MalI GATC 6 cut(s) 33, 81, 97, 275, 906, 1022
MboI GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
MboII GAAGA 5 cut(s) 177, 283, 349, 766, 982
MflI RGATCY 2 cut(s) 95, 904
MluCI AATT 4 cut(s) 699, 759, 865, 885
MlyI GAGTC 1 cut(s) 939
MmeI TCCRAC 1 cut(s) 898
Mph1103I ATGCAT 1 cut(s) 1012
MseI TTAA 4 cut(s) 762, 779, 833, 852
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 23, 45
MspR9I CCNGG 1 cut(s) 786
MvaI CCWGG 1 cut(s) 786
MwoI GCNNNNNNNGC 5 cut(s) 125, 398, 551, 641, 672
NdeII GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 6 cut(s) 106, 142, 388, 430, 484, 796
NmuCI GTSAC 1 cut(s) 743
NsiI ATGCAT 1 cut(s) 1012
NspI RCATGY 2 cut(s) 388, 484
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 127, 178, 292
PleI GAGTC 1 cut(s) 939
PpsI GAGTC 1 cut(s) 939
PsiI TTATAA 1 cut(s) 1017
Psp1406I AACGTT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspPI GGNCC 2 cut(s) 690, 710
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 2 cut(s) 95, 904
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 4 cut(s) 383, 448, 479, 649
RsaNI GTAC 4 cut(s) 382, 447, 478, 648
SaqAI TTAA 4 cut(s) 762, 779, 833, 852
SatI GCNGC 3 cut(s) 126, 177, 291
Sau3AI GATC 6 cut(s) 31, 79, 95, 273, 904, 1020
Sau96I GGNCC 2 cut(s) 690, 710
SchI GAGTC 1 cut(s) 939
ScrFI CCNGG 1 cut(s) 786
SfaNI GCATC 2 cut(s) 410, 921
SgrAI CRCCGGYG 1 cut(s) 44
SinI GGWCC 2 cut(s) 690, 710
Sse9I AATT 4 cut(s) 699, 759, 865, 885
SsiI CCGC 2 cut(s) 708, 741
SspMI CTAG 6 cut(s) 240, 362, 389, 561, 632, 923
StyD4I CCNGG 1 cut(s) 784
TaaI ACNGT 3 cut(s) 454, 507, 916
TaiI ACGT 2 cut(s) 115, 213
TaqI TCGA 2 cut(s) 75, 954
TasI AATT 4 cut(s) 699, 759, 865, 885
TatI WGTACW 2 cut(s) 381, 477
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 4 cut(s) 762, 779, 833, 852
Tru9I TTAA 4 cut(s) 762, 779, 833, 852
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 1 cut(s) 743
TseI GCWGC 3 cut(s) 125, 176, 290
Tsp45I GTSAC 1 cut(s) 743
TspDTI ATGAA 3 cut(s) 781, 914, 977
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 339
VpaK11BI GGWCC 2 cut(s) 690, 710
XceI RCATGY 2 cut(s) 388, 484
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 6 cut(s) 240, 362, 389, 561, 632, 923
Zsp2I ATGCAT 1 cut(s) 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.