pycom08g12760

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015344
Physical Location & Seq
Forward (+)
11325164 .. 11329994
4831 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g12760.7

Sequence Viewer

Length: 1053 bp
ATGTTGGGTTCGGGCAAGAATTCGATATTGCCGGTGTCGGATCCTTCGAGTGACCAGGAGAGAGAGAGACTCATTGGAGCTGACGACGATGAGAAGTTCTTCAGAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCCATCTCTTACATGGCTTGCGCAGTGCTGTTGGTGATGTTCAACAAGGCAGCTCTGTCTTCTTATAAATTTCCAAGTGCAAACGTTATCACACTCTTTCAGATGATATGTTCGTGTGGTTTTCTCTACACCTTGAGACGGTGGAACATGATTTCTTTCACAGTAGGTGAATCTTCGATCATTTATGACGACAACGCCACTACACTTGTACCATTAAAGACATTGAAGAAAACCCTTCCTCTTGCAGGAGCCTATTTGATGTACATGCTAGCCTCCATGGAGTCTGTCCGCGGGGTAAATGTTCCCATGTACACCACCCTTAGGAGGACTACTGTAGTATTTACAATGGTTATGGAGTATATTTTGGCTGGGCAGAGATATACATCTCCTATTGTTCGAAGTGTCGGTGTGATTGTTCTTGGTGCATTTGTTGCTGGATCTCGGGATTTTTCATTTGATGCCTATGGCTATGGTGTTGTTTTCTTATCCAACATCACGACAGCAGTATATCTTGCAACCATAGCCCGTATTGGGAAATCCAGTGGCCTTAATAGTTTTGGCCTCATGTGGTGTAATGGATTCATATGCGGACCAGTTTTGCTGTTTTTGACTTTTATTCGTGGTGACTTGAAGGCAACAATCGACTTTCCTTATCTCCTTTCACCTGGTTTTATGGCGGTCTTGCTTTGTTCCTGTATACTGGCATTCTTCTTGAACTACAGCATATTCCTCAACACAACTCTAAATTCAGCTCTTACGCAGACAATTTGCGGTAACTTGAAGGATTTTTTTACCATCGGACTTGGTTGGATGCTATTCGGTGGCCTTCCATTTGATATCTTGAATGTTATCGGTCAATTTCTCGGTTTCCTTGGCTCTGGGTTGTATGCCTACTACAAGCTCATAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

351

Amino Acids

38.45

Weight (kDa)

9.03

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
Acc16I TGCGCA 1 cut(s) 160
AccI GTMKAC 1 cut(s) 835
AccII CGCG 1 cut(s) 429
AciI CCGC 6 cut(s) 111, 427, 429, 726, 815, 909
AclI AACGTT 1 cut(s) 222
AclWI GGATC 5 cut(s) 35, 48, 102, 115, 583
AcsI RAATTY 3 cut(s) 19, 206, 883
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 3 cut(s) 348, 401, 449
AfiI CCNNNNNNNGG 5 cut(s) 276, 383, 459, 462, 669
AgsI TTSAA 6 cut(s) 181, 364, 769, 853, 919, 982
AjiI CACGTC 1 cut(s) 125
AjnI CCWGG 2 cut(s) 54, 802
AluBI AGCT 4 cut(s) 80, 191, 890, 1039
AluI AGCT 4 cut(s) 80, 191, 890, 1039
Alw26I GTCTC 2 cut(s) 61, 268
AlwI GGATC 5 cut(s) 35, 48, 102, 115, 583
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 3 cut(s) 682, 697, 961
ApeKI GCWGC 2 cut(s) 137, 188
ApoI RAATTY 3 cut(s) 19, 206, 883
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 728
AsuHPI GGTGA 4 cut(s) 184, 317, 773, 792
AsuII TTCGAA 1 cut(s) 535
AsuNHI GCTAGC 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 458
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BamHI GGATCC 2 cut(s) 40, 107
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 2 cut(s) 124, 200
BccI CCATC 2 cut(s) 149, 941
BciT130I CCWGG 2 cut(s) 56, 804
BcoDI GTCTC 2 cut(s) 61, 268
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 2 cut(s) 471, 856
BisI GCNGC 2 cut(s) 138, 189
BlsI GCNGC 2 cut(s) 139, 190
Bme1390I CCNGG 2 cut(s) 56, 804
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 579
BmgBI CACGTC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 728
BmiI GGNNCC 4 cut(s) 42, 109, 130, 388
BmrFI CCNGG 2 cut(s) 56, 804
BmsI GCATC 2 cut(s) 586, 939
BmtI GCTAGC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 520
BsaJI CCNNGG 3 cut(s) 414, 427, 1009
Bsc4I CCNNNNNNNGG 5 cut(s) 276, 383, 459, 462, 669
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 3 cut(s) 678, 731, 843
Bse21I CCTNAGG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 520
BseBI CCWGG 2 cut(s) 56, 804
BseDI CCNNGG 3 cut(s) 414, 427, 1009
BseGI GGATG 1 cut(s) 954
BseJI GATNNNNATC 1 cut(s) 520
BseLI CCNNNNNNNGG 5 cut(s) 276, 383, 459, 462, 669
BseNI ACTGG 3 cut(s) 678, 731, 843
BseXI GCAGC 2 cut(s) 124, 200
BseYI CCCAGC 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 684, 699, 963
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 5 cut(s) 276, 383, 459, 462, 669
BsmAI GTCTC 2 cut(s) 61, 268
BsmBI CGTCTC 1 cut(s) 268
BsmI GAATGC 1 cut(s) 842
BsnI GGCC 3 cut(s) 684, 699, 963
BsoBI CYCGRG 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 535
Bsp1407I TGTACA 2 cut(s) 399, 447
Bsp143I GATC 4 cut(s) 40, 107, 315, 575
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 6 cut(s) 111, 427, 429, 726, 815, 909
BspANI GGCC 3 cut(s) 684, 699, 963
BspFNI CGCG 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 42, 109, 130, 388
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 5 cut(s) 35, 48, 102, 115, 583
BspT104I TTCGAA 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 399, 447
BsrI ACTGG 3 cut(s) 678, 731, 843
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 414, 427, 1009
BssMI GATC 4 cut(s) 40, 107, 315, 575
BssNAI GTATAC 1 cut(s) 836
BssT1I CCWWGG 2 cut(s) 414, 1009
Bst1107I GTATAC 1 cut(s) 836
Bst2UI CCWGG 2 cut(s) 56, 804
Bst4CI ACNGT 3 cut(s) 279, 301, 472
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 2 cut(s) 399, 447
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 157, 408
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 2 cut(s) 414, 427
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 954
BstFNI CGCG 1 cut(s) 429
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 4 cut(s) 43, 110, 318, 578
BstMAI GTCTC 2 cut(s) 61, 268
BstMBI GATC 4 cut(s) 40, 107, 315, 575
BstMWI GCNNNNNNNGC 3 cut(s) 137, 569, 659
BstNI CCWGG 2 cut(s) 56, 804
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 54, 802
BstSFI CTRYAG 2 cut(s) 471, 856
BstUI CGCG 1 cut(s) 429
BstV1I GCAGC 2 cut(s) 124, 200
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 3 cut(s) 40, 107, 575
BstYI RGATCY 3 cut(s) 40, 107, 575
BstZ17I GTATAC 1 cut(s) 836
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 3 cut(s) 684, 699, 963
BtgI CCRYGG 2 cut(s) 414, 427
BtrI CACGTC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 954
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 685
Cac8I GCNNGC 2 cut(s) 157, 408
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 728
Cfr42I CCGCGG 1 cut(s) 430
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 3 cut(s) 347, 400, 448
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 7 cut(s) 115, 151, 286, 403, 415, 445, 703
CviQI GTAC 3 cut(s) 347, 400, 448
DdeI CTNAG 1 cut(s) 458
DpnI GATC 4 cut(s) 42, 109, 317, 577
DpnII GATC 4 cut(s) 40, 107, 315, 575
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 414, 1009
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 579
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 54, 802
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 2 cut(s) 414, 1009
ErhI CCWWGG 2 cut(s) 414, 1009
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 7 cut(s) 118, 154, 289, 406, 418, 448, 706
FatI CATG 7 cut(s) 114, 150, 285, 402, 414, 444, 702
FauI CCCGC 1 cut(s) 422
FauNDI CATATG 1 cut(s) 722
FblI GTMKAC 1 cut(s) 835
Fnu4HI GCNGC 2 cut(s) 138, 189
FokI GGATG 1 cut(s) 961
Fsp4HI GCNGC 2 cut(s) 138, 189
FspBI CTAG 1 cut(s) 407
FspI TGCGCA 1 cut(s) 160
GlaI GCGC 1 cut(s) 160
GluI GCNGC 2 cut(s) 138, 189
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 3 cut(s) 684, 699, 963
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 161
Hin1II CATG 7 cut(s) 118, 154, 289, 406, 418, 448, 706
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 4 cut(s) 69, 308, 419, 717
HpaII CCGG 1 cut(s) 32
HphI GGTGA 4 cut(s) 184, 317, 773, 792
Hpy166II GTNNAC 2 cut(s) 450, 836
Hpy188I TCNGA 4 cut(s) 40, 104, 240, 938
Hpy188III TCNNGA 4 cut(s) 581, 634, 850, 979
Hpy8I GTNNAC 2 cut(s) 450, 836
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 5 cut(s) 54, 383, 763, 913, 974
HpyCH4III ACNGT 3 cut(s) 279, 301, 472
HpyCH4IV ACGT 2 cut(s) 124, 222
HpyCH4V TGCA 4 cut(s) 218, 383, 563, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 569, 659
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 2 cut(s) 124, 222
Hsp92II CATG 7 cut(s) 118, 154, 289, 406, 418, 448, 706
HspAI GCGC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 430
Kzo9I GATC 4 cut(s) 40, 107, 315, 575
LmnI GCTCC 3 cut(s) 77, 128, 386
Lsp1109I GCAGC 2 cut(s) 124, 200
LweI GCATC 2 cut(s) 586, 939
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 1 cut(s) 407
MaeII ACGT 2 cut(s) 124, 222
MaeIII GTNAC 3 cut(s) 50, 761, 911
MalI GATC 4 cut(s) 42, 109, 317, 577
MboI GATC 4 cut(s) 40, 107, 315, 575
MboII GAAGA 5 cut(s) 91, 189, 303, 376, 838
MflI RGATCY 3 cut(s) 40, 107, 575
MluCI AATT 5 cut(s) 19, 206, 883, 903, 995
MlyI GAGTC 2 cut(s) 63, 428
MmeI TCCRAC 3 cut(s) 18, 651, 926
MnlI CCTC 6 cut(s) 98, 387, 421, 456, 710, 878
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 2 cut(s) 353, 687
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 56, 804
Mva1269I GAATGC 1 cut(s) 842
MvaI CCWGG 2 cut(s) 56, 804
MvnI CGCG 1 cut(s) 429
MwoI GCNNNNNNNGC 3 cut(s) 137, 569, 659
NcoI CCATGG 1 cut(s) 414
NdeI CATATG 1 cut(s) 722
NdeII GATC 4 cut(s) 40, 107, 315, 575
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 7 cut(s) 118, 154, 289, 406, 418, 448, 706
NlaIV GGNNCC 4 cut(s) 42, 109, 130, 388
NmuCI GTSAC 2 cut(s) 50, 761
NsbI TGCGCA 1 cut(s) 160
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 308, 717
PkrI GCNGC 2 cut(s) 139, 190
PleI GAGTC 2 cut(s) 63, 427
PpsI GAGTC 2 cut(s) 63, 427
PsiI TTATAA 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 54, 802
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 54, 802
PspN4I GGNNCC 4 cut(s) 42, 109, 130, 388
PspPI GGNCC 1 cut(s) 728
PsuI RGATCY 3 cut(s) 40, 107, 575
RsaI GTAC 3 cut(s) 348, 401, 449
RsaNI GTAC 3 cut(s) 347, 400, 448
SacII CCGCGG 1 cut(s) 430
SaqAI TTAA 2 cut(s) 353, 687
SatI GCNGC 2 cut(s) 138, 189
Sau3AI GATC 4 cut(s) 40, 107, 315, 575
Sau96I GGNCC 1 cut(s) 728
SchI GAGTC 2 cut(s) 63, 428
ScrFI CCNGG 2 cut(s) 56, 804
SetI ASST 9 cut(s) 82, 127, 193, 225, 272, 307, 805, 892, 1041
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 2 cut(s) 586, 939
SfcI CTRYAG 2 cut(s) 471, 856
Sfr303I CCGCGG 1 cut(s) 430
SfuI TTCGAA 1 cut(s) 535
SgrBI CCGCGG 1 cut(s) 430
SinI GGWCC 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 5 cut(s) 19, 206, 883, 903, 995
SsiI CCGC 6 cut(s) 111, 427, 429, 726, 815, 909
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 54, 802
StyI CCWWGG 2 cut(s) 414, 1009
TaaI ACNGT 3 cut(s) 279, 301, 472
TaiI ACGT 2 cut(s) 127, 225
TaqI TCGA 5 cut(s) 23, 47, 314, 535, 780
TaqII GACCGA 1 cut(s) 980
TasI AATT 5 cut(s) 19, 206, 883, 903, 995
TatI WGTACW 2 cut(s) 399, 447
TfiI GAWTC 2 cut(s) 308, 717
Tru1I TTAA 2 cut(s) 353, 687
Tru9I TTAA 2 cut(s) 353, 687
TscAI CASTG 2 cut(s) 168, 685
TseFI GTSAC 2 cut(s) 50, 761
TseI GCWGC 2 cut(s) 137, 188
Tsp45I GTSAC 2 cut(s) 50, 761
TspDTI ATGAA 2 cut(s) 579, 709
TspRI CASTG 2 cut(s) 168, 685
VpaK11BI GGWCC 1 cut(s) 728
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 3 cut(s) 19, 206, 883
XceI RCATGY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 835
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.