Rroxscaffold_7G00170180

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015344
Physical Location & Seq
Forward (+)
10618716 .. 10622918
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170180.1

Sequence Viewer

Length: 1059 bp
ATGCCTGTGAGGGCGTCGAGTTCCGGCAAGAATTTGATGCTGCCGGTATCGGATCCTCCGCGGGACCACGAGCTAGGCCGGCTCATCGGAGACGACGACGATGAGGAGGAGGAGAAGCTCTTTAAAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCAATTTCTTACATGGCCTGTGCAGTGTTGTTGGTGATGTTCAACAAAGCAGCACTCTCTTCTTATCGATTCCCTAGTGCAAATGTCATCACACTCTTTCAGATGATATGTTCATGTTTCTTTCTATATACCTTGAGACGCTGGAAGATGATTACTTTCACAGCTGGGGAATCCTCGGCCTTTTCTGATATCAACACCACAACACTTGTACCATTGAAGACTTTGAAGAAAACATTTCCTCTTGCTGGAGCCTATTTGCTATACATGCTAGCCACCATGGAGTCTGTCCGTGGAGTAAATGTTCCAATGTACACCACCCTCAGGAGGACTACAGTGGTTTTCACAATGGTGATGGAGTATTTTCTGGCTGGGCAGAGATATACATCTCCTATTGTTGGAAGTGTTGGACTGATCGTTCTTGGTGCATTTATTGCTGGAGCTCGGGATTTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTCTTATCCAACATCACAACAGCAATATATCTTGCAACTATAGCACGGAAATCCAGTGGCCTTAATAGCTTTGGCCTTATGTGGAATCATGTGTGGACCAGCTTTGCTTCTTTTGACTTTTTTCATGGTGACCTGAAGACGACGATCGATTTTCCTTATCTGCTGTCACCTGGTTTTATGGTTGTCTTGCTCTGTTCCTGTGTACTGGCATTCTTCCTGAATTACTGTATATTTCTTAATACGACACTAAATTCAGCACTAACGCAGACAATTTGCGGTAACTTGAAGGATTTCTTTACCATTGGACTTGGCTGGGTGATATTTGGTGGCCTTCCATTTGATATTTTGAATGTCATTGGGCAATGTCTTGGTTTTCTTGGTTCTGGATTGTACGCCTACAATAAGCTCATAGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

352

Amino Acids

38.89

Weight (kDa)

8.69

Isoelectric Point (pI)

39.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 59 - 344 1.8e-11 Triose-phosphate Transporter family
UAA PF08449 75 - 347 8.6e-09 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 59, 61, 132, 915
AclWI GGATC 4 cut(s) 47, 60, 123, 136
AcsI RAATTY 2 cut(s) 31, 889
AcuI CTGAAG 1 cut(s) 794
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 4 cut(s) 369, 470, 843, 1031
AfiI CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
AgsI TTSAA 5 cut(s) 202, 376, 385, 925, 988
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 808
AleI CACNNNNGTG 1 cut(s) 506
AloI GAACNNNNNNTCC 4 cut(s) 444, 476, 558, 590
AluBI AGCT 7 cut(s) 73, 118, 323, 599, 708, 741, 1045
AluI AGCT 7 cut(s) 73, 118, 323, 599, 708, 741, 1045
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 2 cut(s) 84, 289
AlwI GGATC 4 cut(s) 47, 60, 123, 136
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 6 cut(s) 76, 174, 336, 697, 712, 967
ApeKI GCWGC 3 cut(s) 40, 158, 209
ApoI RAATTY 2 cut(s) 31, 889
Asp700I GAANNNNTTC 1 cut(s) 929
AspS9I GGNCC 2 cut(s) 64, 735
AsuHPI GGTGA 5 cut(s) 205, 520, 779, 798, 967
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 2 cut(s) 64, 735
AxyI CCTNAGG 1 cut(s) 479
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BamHI GGATCC 2 cut(s) 52, 128
BanII GRGCYC 1 cut(s) 601
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 3 cut(s) 383, 631, 782
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 27, 145, 221
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 810
BcoDI GTCTC 2 cut(s) 84, 289
BfaI CTAG 3 cut(s) 74, 234, 428
BfmI CTRYAG 2 cut(s) 489, 678
BisI GCNGC 3 cut(s) 41, 159, 210
BlsI GCNGC 3 cut(s) 42, 160, 211
Bme1390I CCNGG 1 cut(s) 810
Bme18I GGWCC 2 cut(s) 64, 735
BmeT110I CYCGRG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 64, 735
BmiI GGNNCC 5 cut(s) 54, 65, 130, 151, 409
BmrFI CCNGG 1 cut(s) 810
BmsI GCATC 2 cut(s) 27, 607
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 3 cut(s) 383, 631, 782
BpmI CTGGAG 2 cut(s) 426, 615
BpuEI CTTGAG 1 cut(s) 313
Bsa29I ATCGAT 2 cut(s) 226, 786
BsaBI GATNNNNATC 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 59, 333, 435, 448
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
Bse118I RCCGGY 2 cut(s) 43, 78
Bse1I ACTGG 2 cut(s) 693, 849
Bse21I CCTNAGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 1007
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 1 cut(s) 810
BseCI ATCGAT 2 cut(s) 226, 786
BseDI CCNNGG 4 cut(s) 59, 333, 435, 448
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
BseMI GCAATG 1 cut(s) 1007
BseMII CTCAG 1 cut(s) 493
BseNI ACTGG 2 cut(s) 693, 849
BseRI GAGGAG 3 cut(s) 119, 122, 125
BseXI GCAGC 3 cut(s) 27, 145, 221
BseYI CCCAGC 3 cut(s) 323, 527, 951
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 786
BshFI GGCC 6 cut(s) 78, 176, 338, 699, 714, 969
BshVI ATCGAT 2 cut(s) 226, 786
BsiEI CGRYCG 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 3 cut(s) 24, 44, 79
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
BsmAI GTCTC 2 cut(s) 84, 289
BsmBI CGTCTC 2 cut(s) 84, 289
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 848
BsnI GGCC 6 cut(s) 78, 176, 338, 699, 714, 969
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 4 cut(s) 52, 128, 570, 783
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 4 cut(s) 59, 61, 132, 915
BspANI GGCC 6 cut(s) 78, 176, 338, 699, 714, 969
BspCNI CTCAG 1 cut(s) 492
BspDI ATCGAT 2 cut(s) 226, 786
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 54, 65, 130, 151, 409
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 4 cut(s) 47, 60, 123, 136
BsrDI GCAATG 1 cut(s) 1007
BsrFI RCCGGY 2 cut(s) 43, 78
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 2 cut(s) 693, 849
BssAI RCCGGY 2 cut(s) 43, 78
BssECI CCNNGG 4 cut(s) 59, 333, 435, 448
BssMI GATC 4 cut(s) 52, 128, 570, 783
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 2 cut(s) 493, 866
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 80, 429
BstDEI CTNAG 1 cut(s) 479
BstDSI CCRYGG 3 cut(s) 59, 435, 448
BstEII GGTNACC 1 cut(s) 767
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 4 cut(s) 55, 131, 573, 786
BstMAI GTCTC 2 cut(s) 84, 289
BstMBI GATC 4 cut(s) 52, 128, 570, 783
BstMCI CGRYCG 1 cut(s) 786
BstMWI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 705
BstNI CCWGG 1 cut(s) 810
BstNSI RCATGY 1 cut(s) 427
BstPI GGTNACC 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 808
BstSFI CTRYAG 2 cut(s) 489, 678
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 27, 145, 221
BstV2I GAAGAC 3 cut(s) 383, 631, 782
BstX2I RGATCY 2 cut(s) 52, 128
BstYI RGATCY 2 cut(s) 52, 128
Bsu15I ATCGAT 2 cut(s) 226, 786
Bsu36I CCTNAGG 1 cut(s) 479
BsuRI GGCC 6 cut(s) 78, 176, 338, 699, 714, 969
BsuTUI ATCGAT 2 cut(s) 226, 786
BtgI CCRYGG 3 cut(s) 59, 435, 448
BtrI CACGTC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 498, 700
Cac8I GCNNGC 2 cut(s) 80, 429
Cfr10I RCCGGY 2 cut(s) 43, 78
Cfr13I GGNCC 2 cut(s) 64, 735
Cfr42I CCGCGG 1 cut(s) 62
ClaI ATCGAT 2 cut(s) 226, 786
CseI GACGC 2 cut(s) 3, 306
CsiI ACCWGGT 1 cut(s) 808
Csp6I GTAC 4 cut(s) 368, 469, 842, 1030
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 7 cut(s) 136, 172, 273, 424, 436, 728, 764
CviQI GTAC 4 cut(s) 368, 469, 842, 1030
DdeI CTNAG 1 cut(s) 479
DpnI GATC 4 cut(s) 54, 130, 572, 785
DpnII GATC 4 cut(s) 52, 128, 570, 783
DraI TTTAAA 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 64, 735
Eco53kI GAGCTC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 794
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 767
EcoICRI GAGCTC 1 cut(s) 599
EcoO65I GGTNACC 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 808
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 2 cut(s) 84, 289
FaeI CATG 7 cut(s) 139, 175, 276, 427, 439, 731, 767
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 1 cut(s) 77
FatI CATG 7 cut(s) 135, 171, 272, 423, 435, 727, 763
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 41, 159, 210
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 3 cut(s) 41, 159, 210
FspBI CTAG 3 cut(s) 74, 234, 428
GluI GCNGC 3 cut(s) 41, 159, 210
GsaI CCCAGC 3 cut(s) 327, 531, 955
GsuI CTGGAG 2 cut(s) 426, 615
HaeIII GGCC 6 cut(s) 78, 176, 338, 699, 714, 969
HapII CCGG 3 cut(s) 24, 44, 79
HgaI GACGC 2 cut(s) 3, 306
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 139, 175, 276, 427, 439, 731, 767
HinfI GANTC 4 cut(s) 228, 329, 440, 724
HpaII CCGG 3 cut(s) 24, 44, 79
HphI GGTGA 5 cut(s) 205, 520, 779, 798, 967
Hpy166II GTNNAC 3 cut(s) 471, 735, 842
Hpy188I TCNGA 4 cut(s) 52, 89, 261, 346
Hpy188III TCNNGA 4 cut(s) 481, 602, 856, 1023
Hpy8I GTNNAC 3 cut(s) 471, 735, 842
Hpy99I CGWCG 4 cut(s) 19, 98, 101, 784
HpyAV CCTTC 2 cut(s) 919, 980
HpyCH4III ACNGT 2 cut(s) 493, 866
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 161, 182, 239, 584, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 705
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 139, 175, 276, 427, 439, 731, 767
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 4 cut(s) 52, 128, 570, 783
LmnI GCTCC 3 cut(s) 149, 407, 596
Lsp1109I GCAGC 3 cut(s) 27, 145, 221
LweI GCATC 2 cut(s) 27, 607
MabI ACCWGGT 1 cut(s) 808
MaeI CTAG 3 cut(s) 74, 234, 428
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 767, 804, 917
MalI GATC 4 cut(s) 54, 130, 572, 785
MboI GATC 4 cut(s) 52, 128, 570, 783
MboII GAAGA 7 cut(s) 210, 316, 388, 397, 631, 787, 844
MflI RGATCY 2 cut(s) 52, 128
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 5 cut(s) 31, 162, 859, 889, 909
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 3 cut(s) 535, 544, 672
MnlI CCTC 9 cut(s) 3, 66, 97, 100, 103, 343, 408, 477, 488
MroNI GCCGGC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 929
MseI TTAA 3 cut(s) 123, 702, 876
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 2 cut(s) 61, 323
MspI CCGG 3 cut(s) 24, 44, 79
MspR9I CCNGG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 848
MvaI CCWGG 1 cut(s) 810
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 705
NaeI GCCGGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 52, 128, 570, 783
NgoMIV GCCGGC 1 cut(s) 78
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 7 cut(s) 139, 175, 276, 427, 439, 731, 767
NlaIV GGNNCC 5 cut(s) 54, 65, 130, 151, 409
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 2 cut(s) 767, 804
NspI RCATGY 1 cut(s) 427
OliI CACNNNNGTG 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 848
PdiI GCCGGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 929
PfeI GAWTC 3 cut(s) 228, 329, 724
PkrI GCNGC 3 cut(s) 42, 160, 211
Ple19I CGATCG 1 cut(s) 786
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 808
PspEI GGTNACC 1 cut(s) 767
PspFI CCCAGC 3 cut(s) 323, 527, 951
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 5 cut(s) 54, 65, 130, 151, 409
PspPI GGNCC 2 cut(s) 64, 735
PsuI RGATCY 2 cut(s) 52, 128
PvuI CGATCG 1 cut(s) 786
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 4 cut(s) 369, 470, 843, 1031
RsaNI GTAC 4 cut(s) 368, 469, 842, 1030
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 601
SacII CCGCGG 1 cut(s) 62
SaqAI TTAA 3 cut(s) 123, 702, 876
SatI GCNGC 3 cut(s) 41, 159, 210
Sau3AI GATC 4 cut(s) 52, 128, 570, 783
Sau96I GGNCC 2 cut(s) 64, 735
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 810
SduI GDGCHC 1 cut(s) 601
SexAI ACCWGGT 1 cut(s) 808
SfaNI GCATC 2 cut(s) 27, 607
SfcI CTRYAG 2 cut(s) 489, 678
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SinI GGWCC 2 cut(s) 64, 735
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 5 cut(s) 31, 162, 859, 889, 909
SsiI CCGC 4 cut(s) 59, 61, 132, 915
SspMI CTAG 3 cut(s) 74, 234, 428
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 808
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 493, 866
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 17, 226, 786
TasI AATT 5 cut(s) 31, 162, 859, 889, 909
TatI WGTACW 2 cut(s) 468, 841
TfiI GAWTC 3 cut(s) 228, 329, 724
Tru1I TTAA 3 cut(s) 123, 702, 876
Tru9I TTAA 3 cut(s) 123, 702, 876
TscAI CASTG 3 cut(s) 189, 498, 700
TseFI GTSAC 2 cut(s) 767, 804
TseI GCWGC 3 cut(s) 40, 158, 209
Tsp45I GTSAC 2 cut(s) 767, 804
TspDTI ATGAA 2 cut(s) 261, 752
TspGWI ACGGA 2 cut(s) 437, 700
TspRI CASTG 3 cut(s) 189, 498, 700
VpaK11BI GGWCC 2 cut(s) 64, 735
XapI RAATTY 2 cut(s) 31, 889
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 929
XspI CTAG 3 cut(s) 74, 234, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.