Rorug06G0275600

UDP-sugar transporter

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
42293423 .. 42294621
1199 bp
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UTR
Exon/CDS
Intron
Rorug06G0275600.1

Sequence Viewer

Length: 303 bp
ATGTCAGGGACAACGGGAGGAGCTCCGGAGGAAGATAAGAAGCCCAGTGATCAATCTGCCCACATTAACCTCAAAGTGAAGGGTCAGGATGGTAATGAGGTATTCTTCAGGATCAAACATAGCACCCAGCTGAAGAAACTCATGAATGCCTACTGTGATCGGCAGTCAGTGGACATGAACTCCATTGCATTCTTGTTTGATGGACGCAGACTCCGGCCAGAGCAGACTCCAGATGAGCTTGAGATGGAAGATGGTGATGAGATTGATGCAATGCTGCACCAAACTGGAGGAGGGTGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.17

Weight (kDa)

4.92

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 22 - 92 1.4e-26 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 24 - 94 2.3e-16 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 25
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 91, 152
AluBI AGCT 3 cut(s) 23, 130, 238
AluI AGCT 3 cut(s) 23, 130, 238
Alw21I GWGCWC 1 cut(s) 25
AlwI GGATC 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 266
BanII GRGCYC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 261
BccI CCATC 4 cut(s) 83, 194, 238, 245
BclI TGATCA 1 cut(s) 49
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 260
BsaWI WCCGGW 1 cut(s) 25
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 195, 225
Bse1I ACTGG 2 cut(s) 45, 289
Bse3DI GCAATG 2 cut(s) 183, 276
BseAI TCCGGA 1 cut(s) 25
BseGI GGATG 1 cut(s) 94
BseMI GCAATG 2 cut(s) 183, 276
BseNI ACTGG 2 cut(s) 45, 289
BseRI GAGGAG 2 cut(s) 33, 303
BseXI GCAGC 1 cut(s) 261
BseYI CCCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 260
BshFI GGCC 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 26, 214
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 2 cut(s) 151, 188
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 25
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 3 cut(s) 49, 111, 157
BspANI GGCC 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 25
BspHI TCATGA 1 cut(s) 141
BspPI GGATC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 183, 276
BsrI ACTGG 2 cut(s) 45, 289
BssMI GATC 3 cut(s) 49, 111, 157
Bst4CI ACNGT 1 cut(s) 155
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 3 cut(s) 52, 114, 160
BstMBI GATC 3 cut(s) 49, 111, 157
BstV1I GCAGC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 52, 174
CciI TCATGA 1 cut(s) 141
CseI GACGC 1 cut(s) 213
CviAII CATG 3 cut(s) 142, 175, 300
CviJI RGCY 5 cut(s) 23, 43, 130, 217, 238
CviKI_1 RGCY 5 cut(s) 23, 43, 130, 217, 238
DpnI GATC 3 cut(s) 51, 113, 159
DpnII GATC 3 cut(s) 49, 111, 157
EaeI YGGCCR 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 25
Eco53kI GAGCTC 1 cut(s) 23
Eco57I CTGAAG 2 cut(s) 91, 152
EcoICRI GAGCTC 1 cut(s) 23
EcoT38I GRGCYC 1 cut(s) 25
FaeI CATG 3 cut(s) 145, 178, 303
FaiI YATR 4 cut(s) 120, 143, 176, 301
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 141, 174, 299
FbaI TGATCA 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
GsaI CCCAGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 1 cut(s) 217
HapII CCGG 2 cut(s) 26, 214
HgaI GACGC 1 cut(s) 213
Hin1II CATG 3 cut(s) 145, 178, 303
HinfI GANTC 2 cut(s) 210, 226
HpaII CCGG 2 cut(s) 26, 214
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 5 cut(s) 26, 86, 109, 142, 230
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 3 cut(s) 188, 269, 277
Hsp92II CATG 3 cut(s) 145, 178, 303
Kpn2I TCCGGA 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 3 cut(s) 49, 111, 157
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 9 cut(s) 39, 58, 71, 94, 140, 227, 231, 243, 270
Lsp1109I GCAGC 1 cut(s) 261
LweI GCATC 1 cut(s) 256
MalI GATC 3 cut(s) 51, 113, 159
MboI GATC 3 cut(s) 49, 111, 157
MboII GAAGA 4 cut(s) 44, 97, 145, 260
MhlI GDGCHC 1 cut(s) 25
MlyI GAGTC 2 cut(s) 204, 220
MnlI CCTC 6 cut(s) 11, 22, 80, 91, 281, 284
MroI TCCGGA 1 cut(s) 25
MseI TTAA 1 cut(s) 66
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 2 cut(s) 26, 214
Mva1269I GAATGC 2 cut(s) 151, 188
NdeII GATC 3 cut(s) 49, 111, 157
NlaIII CATG 3 cut(s) 145, 178, 303
PagI TCATGA 1 cut(s) 141
PctI GAATGC 2 cut(s) 151, 188
PkrI GCNGC 1 cut(s) 276
PleI GAGTC 2 cut(s) 204, 220
PpsI GAGTC 2 cut(s) 204, 220
Psp124BI GAGCTC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 130
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 3 cut(s) 49, 111, 157
SchI GAGTC 2 cut(s) 204, 220
SduI GDGCHC 1 cut(s) 25
SetI ASST 5 cut(s) 25, 72, 102, 132, 240
SfaNI GCATC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SstI GAGCTC 1 cut(s) 25
TaaI ACNGT 1 cut(s) 155
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 2 cut(s) 52, 174
TseI GCWGC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 158, 191
TspRI CASTG 2 cut(s) 52, 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.