MD15G1125800.v1.1

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015344
Physical Location & Seq
Forward (+)
9156971 .. 9160891
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1125800.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGTCGGGTTCGGTCAAGAATTCGATATTGCCGGTGTCGGATCCTCCGAGGGACCAGGAGAGAGAGAGACTCATCGGAGCTGGCGACGATGAGAAACTCTTCAGAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCAATCTCGTACATGGCTTGTGCAGTGATGTTGGTGATGTTCAACAAGGCAGCTCTCTCGTCTTATAAATTTCCAAGTGCAAACGTTATCACACTTTTTCAGATGATATGTTCATGTGGTTTTCTCTACACCTTGAGACGCTGGAAGATGATTTCTTTCACAGTAGGTGAATCTTTGATTATTTCTGACGACAGCACCACAACACTTGTACCATTAAAAACATTGAAGAAAACCCTTCCTCTTGCAGGAGCTTATTTGCTGTACATGCTAGCCACCATGGAGTCTGTCCGTGGAGTAAATGTTCCCATGTACACCACCCTCAGAAGAACTACCGTGGTATTTACAATGGTTATGGAGTATGTTTTGGCTGGGCAGAGATATACAGCTCCCATTGTTCGAAGTGTCGGCCTGATTGTTCTTGGTGCATTTGTTGCCGGATCTCGGGATTTGTCATTTGATGCCTATGGCTATGGTGTTGTTTTCTTATCCAACATCACGACAGCAGTATATCTTGCAACCATAGCCCGTATTGGGAAATCCAGTGGCCTTAATAGTTTTGGCCTCATGTGGTGTAACGGATTCACATGCGGACCGATTTTGCTGTTTTTGACTTTTATTAGTGGTGACTTGAAGGCAACAATCGAGTTTCCTTATCTTCTTTCACCTGGTTTTATGGCGGTCTTGCTTTGTTCCTGTATATTAGCCTTCTTCTTGAATTACAGCATATTCCTTAACACAACTCTGAATTCAGCTCTTACGCAGACAATTTGTGGTAACTTGAAGGATTTTTTTACTGTTGGACTTGGCTGGATGCTATTCGGCGGCCTTCCATTTGATATTTTGAATGTTATCGGTCAATCTCTCGGTTTCCTTGGCTCTGGGTTGTATGCCTACTATAAGCTCATAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

351

Amino Acids

38.26

Weight (kDa)

9.2

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 52 - 342 4e-11 Triose-phosphate Transporter family
UAA PF08449 69 - 345 1.4e-06 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AciI CCGC 4 cut(s) 111, 726, 815, 960
AclI AACGTT 1 cut(s) 222
AclWI GGATC 5 cut(s) 35, 48, 102, 115, 583
AcsI RAATTY 3 cut(s) 19, 206, 883
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 4 cut(s) 149, 348, 401, 449
AfiI CCNNNNNNNGG 3 cut(s) 383, 579, 669
AgsI TTSAA 6 cut(s) 181, 364, 769, 853, 919, 982
AjiI CACGTC 1 cut(s) 125
AjnI CCWGG 2 cut(s) 54, 802
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 6 cut(s) 80, 191, 389, 524, 890, 1039
AluI AGCT 6 cut(s) 80, 191, 389, 524, 890, 1039
Alw26I GTCTC 2 cut(s) 61, 268
AlwI GGATC 5 cut(s) 35, 48, 102, 115, 583
Ama87I CYCGRG 1 cut(s) 579
AoxI GGCC 4 cut(s) 544, 682, 697, 961
ApeKI GCWGC 2 cut(s) 137, 188
ApoI RAATTY 3 cut(s) 19, 206, 883
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 52, 728
AsuHPI GGTGA 4 cut(s) 184, 317, 773, 792
AsuII TTCGAA 1 cut(s) 535
AsuNHI GCTAGC 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 2 cut(s) 52, 728
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BamHI GGATCC 2 cut(s) 40, 107
BbvI GCAGC 2 cut(s) 124, 200
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BciT130I CCWGG 2 cut(s) 56, 804
BcoDI GTCTC 2 cut(s) 61, 268
BfaI CTAG 1 cut(s) 407
BisI GCNGC 3 cut(s) 138, 189, 961
BlsI GCNGC 3 cut(s) 139, 190, 962
Bme1390I CCNGG 2 cut(s) 56, 804
Bme18I GGWCC 2 cut(s) 52, 728
BmeT110I CYCGRG 1 cut(s) 579
BmgBI CACGTC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 52, 728
BmiI GGNNCC 4 cut(s) 42, 53, 109, 130
BmrFI CCNGG 2 cut(s) 56, 804
BmsI GCATC 2 cut(s) 586, 939
BmtI GCTAGC 1 cut(s) 410
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu14I TTCGAA 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 292
BsaJI CCNNGG 5 cut(s) 47, 414, 427, 471, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 423, 453
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 579, 669
Bse118I RCCGGY 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 678
BseBI CCWGG 2 cut(s) 56, 804
BseDI CCNNGG 5 cut(s) 47, 414, 427, 471, 1009
BseGI GGATG 1 cut(s) 954
BseLI CCNNNNNNNGG 3 cut(s) 383, 579, 669
BseMII CTCAG 1 cut(s) 472
BseNI ACTGG 1 cut(s) 678
BseXI GCAGC 2 cut(s) 124, 200
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 4 cut(s) 546, 684, 699, 963
BsiHKCI CYCGRG 1 cut(s) 579
BsiSI CCGG 2 cut(s) 32, 573
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 3 cut(s) 383, 579, 669
BsmAI GTCTC 2 cut(s) 61, 268
BsmBI CGTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 4 cut(s) 546, 684, 699, 963
BsoBI CYCGRG 1 cut(s) 579
Bsp119I TTCGAA 1 cut(s) 535
Bsp1407I TGTACA 2 cut(s) 399, 447
Bsp143I GATC 3 cut(s) 40, 107, 575
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 4 cut(s) 111, 726, 815, 960
BspANI GGCC 4 cut(s) 546, 684, 699, 963
BspCNI CTCAG 1 cut(s) 471
BspLI GGNNCC 4 cut(s) 42, 53, 109, 130
BspOI GCTAGC 1 cut(s) 410
BspPI GGATC 5 cut(s) 35, 48, 102, 115, 583
BspT104I TTCGAA 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 31
BsrGI TGTACA 2 cut(s) 399, 447
BsrI ACTGG 1 cut(s) 678
BssAI RCCGGY 1 cut(s) 31
BssECI CCNNGG 5 cut(s) 47, 414, 427, 471, 1009
BssMI GATC 3 cut(s) 40, 107, 575
BssT1I CCWWGG 2 cut(s) 414, 1009
Bst2UI CCWGG 2 cut(s) 56, 804
Bst4CI ACNGT 3 cut(s) 301, 472, 934
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 2 cut(s) 399, 447
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 82, 408
BstDEI CTNAG 1 cut(s) 458
BstDSI CCRYGG 3 cut(s) 414, 427, 471
BstENI CCTNNNNNAGG 1 cut(s) 381
BstF5I GGATG 1 cut(s) 954
BstKTI GATC 3 cut(s) 43, 110, 578
BstMAI GTCTC 2 cut(s) 61, 268
BstMBI GATC 3 cut(s) 40, 107, 575
BstMWI GCNNNNNNNGC 4 cut(s) 137, 403, 569, 659
BstNI CCWGG 2 cut(s) 56, 804
BstNSI RCATGY 2 cut(s) 406, 726
BstSCI CCNGG 2 cut(s) 54, 802
BstV1I GCAGC 2 cut(s) 124, 200
BstX2I RGATCY 3 cut(s) 40, 107, 575
BstYI RGATCY 3 cut(s) 40, 107, 575
BsuRI GGCC 4 cut(s) 546, 684, 699, 963
BtgI CCRYGG 3 cut(s) 414, 427, 471
BtrI CACGTC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 954
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 168, 685
Cac8I GCNNGC 2 cut(s) 82, 408
Cfr10I RCCGGY 1 cut(s) 31
Cfr13I GGNCC 2 cut(s) 52, 728
CpoI CGGWCCG 1 cut(s) 728
CseI GACGC 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 802
Csp6I GTAC 4 cut(s) 148, 347, 400, 448
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CspI CGGWCCG 1 cut(s) 728
CviAII CATG 8 cut(s) 115, 151, 252, 403, 415, 445, 703, 723
CviQI GTAC 4 cut(s) 148, 347, 400, 448
DdeI CTNAG 1 cut(s) 458
DpnI GATC 3 cut(s) 42, 109, 577
DpnII GATC 3 cut(s) 40, 107, 575
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 414, 1009
Eco47I GGWCC 2 cut(s) 52, 728
Eco57I CTGAAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 579
EcoNI CCTNNNNNAGG 1 cut(s) 381
EcoRI GAATTC 2 cut(s) 19, 883
EcoRII CCWGG 2 cut(s) 54, 802
EcoT14I CCWWGG 2 cut(s) 414, 1009
ErhI CCWWGG 2 cut(s) 414, 1009
Esp3I CGTCTC 1 cut(s) 268
FaeI CATG 8 cut(s) 118, 154, 255, 406, 418, 448, 706, 726
FaqI GGGAC 1 cut(s) 65
FatI CATG 8 cut(s) 114, 150, 251, 402, 414, 444, 702, 722
Fnu4HI GCNGC 3 cut(s) 138, 189, 961
FokI GGATG 1 cut(s) 961
Fsp4HI GCNGC 3 cut(s) 138, 189, 961
FspBI CTAG 1 cut(s) 407
GluI GCNGC 3 cut(s) 138, 189, 961
GsaI CCCAGC 1 cut(s) 510
HaeIII GGCC 4 cut(s) 546, 684, 699, 963
HapII CCGG 2 cut(s) 32, 573
HgaI GACGC 1 cut(s) 285
Hin1II CATG 8 cut(s) 118, 154, 255, 406, 418, 448, 706, 726
HinfI GANTC 4 cut(s) 69, 308, 419, 717
HpaII CCGG 2 cut(s) 32, 573
HphI GGTGA 4 cut(s) 184, 317, 773, 792
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 8 cut(s) 40, 48, 77, 104, 240, 325, 461, 882
Hpy188III TCNNGA 4 cut(s) 16, 581, 634, 850
Hpy8I GTNNAC 1 cut(s) 450
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 5 cut(s) 383, 763, 853, 913, 974
HpyCH4III ACNGT 3 cut(s) 301, 472, 934
HpyCH4IV ACGT 2 cut(s) 124, 222
HpyCH4V TGCA 6 cut(s) 140, 161, 218, 383, 563, 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 403, 569, 659
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 2 cut(s) 124, 222
Hsp92II CATG 8 cut(s) 118, 154, 255, 406, 418, 448, 706, 726
Kzo9I GATC 3 cut(s) 40, 107, 575
LmnI GCTCC 4 cut(s) 77, 128, 386, 529
Lsp1109I GCAGC 2 cut(s) 124, 200
LweI GCATC 2 cut(s) 586, 939
MabI ACCWGGT 1 cut(s) 802
MaeI CTAG 1 cut(s) 407
MaeII ACGT 2 cut(s) 124, 222
MaeIII GTNAC 3 cut(s) 710, 761, 911
MalI GATC 3 cut(s) 42, 109, 577
MboI GATC 3 cut(s) 40, 107, 575
MboII GAAGA 6 cut(s) 91, 295, 376, 474, 785, 838
MflI RGATCY 3 cut(s) 40, 107, 575
MluCI AATT 5 cut(s) 19, 206, 853, 883, 903
MlyI GAGTC 2 cut(s) 63, 428
MmeI TCCRAC 3 cut(s) 18, 651, 916
MnlI CCTC 6 cut(s) 42, 54, 98, 387, 467, 710
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 3 cut(s) 353, 687, 870
MspI CCGG 2 cut(s) 32, 573
MspR9I CCNGG 2 cut(s) 56, 804
MvaI CCWGG 2 cut(s) 56, 804
MwoI GCNNNNNNNGC 4 cut(s) 137, 403, 569, 659
NcoI CCATGG 1 cut(s) 414
NdeII GATC 3 cut(s) 40, 107, 575
NheI GCTAGC 1 cut(s) 406
NlaIII CATG 8 cut(s) 118, 154, 255, 406, 418, 448, 706, 726
NlaIV GGNNCC 4 cut(s) 42, 53, 109, 130
NmuCI GTSAC 1 cut(s) 761
NspI RCATGY 2 cut(s) 406, 726
NspV TTCGAA 1 cut(s) 535
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 81
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 308, 717
PkrI GCNGC 3 cut(s) 139, 190, 962
PleI GAGTC 2 cut(s) 63, 427
PpsI GAGTC 2 cut(s) 63, 427
PsiI TTATAA 1 cut(s) 204
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 54, 802
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 54, 802
PspN4I GGNNCC 4 cut(s) 42, 53, 109, 130
PspPI GGNCC 2 cut(s) 52, 728
PsuI RGATCY 3 cut(s) 40, 107, 575
RsaI GTAC 4 cut(s) 149, 348, 401, 449
RsaNI GTAC 4 cut(s) 148, 347, 400, 448
Rsr2I CGGWCCG 1 cut(s) 728
RsrII CGGWCCG 1 cut(s) 728
SaqAI TTAA 3 cut(s) 353, 687, 870
SatI GCNGC 3 cut(s) 138, 189, 961
Sau3AI GATC 3 cut(s) 40, 107, 575
Sau96I GGNCC 2 cut(s) 52, 728
SchI GAGTC 2 cut(s) 63, 428
ScrFI CCNGG 2 cut(s) 56, 804
SexAI ACCWGGT 1 cut(s) 802
SfaNI GCATC 2 cut(s) 586, 939
SfuI TTCGAA 1 cut(s) 535
SinI GGWCC 2 cut(s) 52, 728
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 5 cut(s) 19, 206, 853, 883, 903
SsiI CCGC 4 cut(s) 111, 726, 815, 960
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 54, 802
StyI CCWWGG 2 cut(s) 414, 1009
TaaI ACNGT 3 cut(s) 301, 472, 934
TaiI ACGT 2 cut(s) 127, 225
TaqI TCGA 3 cut(s) 23, 535, 780
TaqII GACCGA 2 cut(s) 745, 980
TasI AATT 5 cut(s) 19, 206, 853, 883, 903
TatI WGTACW 2 cut(s) 399, 447
TauI GCSGC 1 cut(s) 963
TfiI GAWTC 2 cut(s) 308, 717
Tru1I TTAA 3 cut(s) 353, 687, 870
Tru9I TTAA 3 cut(s) 353, 687, 870
TscAI CASTG 2 cut(s) 168, 685
TseFI GTSAC 1 cut(s) 761
TseI GCWGC 2 cut(s) 137, 188
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 1 cut(s) 240
TspGWI ACGGA 2 cut(s) 416, 729
TspRI CASTG 2 cut(s) 168, 685
VpaK11BI GGWCC 2 cut(s) 52, 728
XagI CCTNNNNNAGG 1 cut(s) 381
XapI RAATTY 3 cut(s) 19, 206, 883
XceI RCATGY 2 cut(s) 406, 726
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.