Rroxscaffold_7G00179030

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015344
Physical Location & Seq
Forward (+)
18612854 .. 18617051
4198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179030.1

Sequence Viewer

Length: 1068 bp
ATGCCTGTGAGGGCGTCGAGTTCCGGCAAGAATTTGATGCTGCCGGTATCGGATCCTCCGCGGGACCACGAGCTAGGCCGGCTCATCGGAGACGACGACGATGAGGAGGAGGAGAAGCTCTTTAAAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCAATTTCTTACATGGCCTGTGCAGTGTTGTTGGTGATGTTCAACAAAGCAGCACTCTCTTCTTATCGATTCCCTAGTGCAAATGTCATCACACTCTTTCAGATGATATGTTCATGTTTCTTTCTATATACCTTGAGACGCTGGAAGATGATTACTTTCACAGCTGGGGAATCCTCGGCCTTTTCTGATATCAACACCACAACACTTGTACCATTGAAGACTTTGAAGAAAACATTTCCTCTTGCTGGAGCCTATTTGCTATACATGCTAGCCACCATGGAGTCTGTCCGTGGAGTAAATGTTCCAATGTACACCACCCTCAGGAGGACTACAGTGGTTTTCACAATGGTGATGGAGTATTTTCTGGCTGGGCAGAGATATACATCTCCTATTGTTGGAAGTGTTGGACTGATCGTTCTTGGTGCATTTATTGCTGGAGCTCGGGATTTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTCTTATCCAACATCACAACAGCAATATATCTTGCAACTATAGCACGGAAATCCAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGGAATCATGTGTGGACCAGCTTTGCTTCTTTTGACTTTTTTTCATGGTGACCTGAAGACGACGATCGATTTTCCTTATCTGCTGTCACCTGGTTTTATGGTTGTCTTGCTCTGTTCCTGTGTACTGGCATTCTTCCTGAATTACTGTATATTTCTTAATACGACACTAAATTCAGCACTAACGCAGACAATTTGCGGTAACTTGAAGGATTTCTTTACCATTGGACTTGGCTGGGTGATATTTGGTGGCCTTCCATTTGATATTTTGAATGTCATTGGGCAATGTCTTGGTTTTCTTGGTTCTGGATTGTACGCCTACAATAAGCTCATAGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

355

Amino Acids

39.0

Weight (kDa)

8.74

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 59 - 347 1e-13 Triose-phosphate Transporter family
UAA PF08449 75 - 350 3.5e-08 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 59, 61, 132, 924
AclWI GGATC 4 cut(s) 47, 60, 123, 136
AcsI RAATTY 2 cut(s) 31, 898
AcuI CTGAAG 1 cut(s) 803
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 4 cut(s) 369, 470, 852, 1040
AfiI CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
AgsI TTSAA 5 cut(s) 202, 376, 385, 934, 997
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 1 cut(s) 817
AleI CACNNNNGTG 1 cut(s) 506
AloI GAACNNNNNNTCC 4 cut(s) 444, 476, 558, 590
AluBI AGCT 7 cut(s) 73, 118, 323, 599, 708, 749, 1054
AluI AGCT 7 cut(s) 73, 118, 323, 599, 708, 749, 1054
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 2 cut(s) 84, 289
AlwI GGATC 4 cut(s) 47, 60, 123, 136
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 6 cut(s) 76, 174, 336, 697, 712, 976
ApeKI GCWGC 3 cut(s) 40, 158, 209
ApoI RAATTY 2 cut(s) 31, 898
Asp700I GAANNNNTTC 1 cut(s) 938
AspS9I GGNCC 2 cut(s) 64, 743
AsuHPI GGTGA 5 cut(s) 205, 520, 788, 807, 976
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 2 cut(s) 64, 743
AxyI CCTNAGG 1 cut(s) 479
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BamHI GGATCC 2 cut(s) 52, 128
BanII GRGCYC 1 cut(s) 601
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 3 cut(s) 383, 631, 791
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 27, 145, 221
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 819
BcoDI GTCTC 2 cut(s) 84, 289
BfaI CTAG 3 cut(s) 74, 234, 428
BfmI CTRYAG 2 cut(s) 489, 678
BisI GCNGC 3 cut(s) 41, 159, 210
BlsI GCNGC 3 cut(s) 42, 160, 211
Bme1390I CCNGG 1 cut(s) 819
Bme18I GGWCC 2 cut(s) 64, 743
BmeT110I CYCGRG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 64, 743
BmiI GGNNCC 5 cut(s) 54, 65, 130, 151, 409
BmrFI CCNGG 1 cut(s) 819
BmsI GCATC 2 cut(s) 27, 607
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 3 cut(s) 383, 631, 791
BpmI CTGGAG 2 cut(s) 426, 615
BpuEI CTTGAG 1 cut(s) 313
Bsa29I ATCGAT 2 cut(s) 226, 795
BsaBI GATNNNNATC 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 59, 333, 435, 448
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
Bse118I RCCGGY 2 cut(s) 43, 78
Bse1I ACTGG 2 cut(s) 693, 858
Bse21I CCTNAGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 1016
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 1 cut(s) 819
BseCI ATCGAT 2 cut(s) 226, 795
BseDI CCNNGG 4 cut(s) 59, 333, 435, 448
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
BseMI GCAATG 1 cut(s) 1016
BseMII CTCAG 1 cut(s) 493
BseNI ACTGG 2 cut(s) 693, 858
BseRI GAGGAG 3 cut(s) 119, 122, 125
BseXI GCAGC 3 cut(s) 27, 145, 221
BseYI CCCAGC 3 cut(s) 323, 527, 960
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 6 cut(s) 78, 176, 338, 699, 714, 978
BshVI ATCGAT 2 cut(s) 226, 795
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 3 cut(s) 24, 44, 79
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 4 cut(s) 404, 480, 483, 554
BsmAI GTCTC 2 cut(s) 84, 289
BsmBI CGTCTC 2 cut(s) 84, 289
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 857
BsnI GGCC 6 cut(s) 78, 176, 338, 699, 714, 978
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 4 cut(s) 52, 128, 570, 792
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 4 cut(s) 59, 61, 132, 924
BspANI GGCC 6 cut(s) 78, 176, 338, 699, 714, 978
BspCNI CTCAG 1 cut(s) 492
BspDI ATCGAT 2 cut(s) 226, 795
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 54, 65, 130, 151, 409
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 4 cut(s) 47, 60, 123, 136
BsrDI GCAATG 1 cut(s) 1016
BsrFI RCCGGY 2 cut(s) 43, 78
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 2 cut(s) 693, 858
BssAI RCCGGY 2 cut(s) 43, 78
BssECI CCNNGG 4 cut(s) 59, 333, 435, 448
BssMI GATC 4 cut(s) 52, 128, 570, 792
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 2 cut(s) 493, 875
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 80, 429
BstDEI CTNAG 1 cut(s) 479
BstDSI CCRYGG 3 cut(s) 59, 435, 448
BstEII GGTNACC 1 cut(s) 776
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 4 cut(s) 55, 131, 573, 795
BstMAI GTCTC 2 cut(s) 84, 289
BstMBI GATC 4 cut(s) 52, 128, 570, 792
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 705
BstNI CCWGG 1 cut(s) 819
BstNSI RCATGY 1 cut(s) 427
BstPI GGTNACC 1 cut(s) 776
BstSCI CCNGG 1 cut(s) 817
BstSFI CTRYAG 2 cut(s) 489, 678
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 27, 145, 221
BstV2I GAAGAC 3 cut(s) 383, 631, 791
BstX2I RGATCY 2 cut(s) 52, 128
BstYI RGATCY 2 cut(s) 52, 128
Bsu15I ATCGAT 2 cut(s) 226, 795
Bsu36I CCTNAGG 1 cut(s) 479
BsuRI GGCC 6 cut(s) 78, 176, 338, 699, 714, 978
BsuTUI ATCGAT 2 cut(s) 226, 795
BtgI CCRYGG 3 cut(s) 59, 435, 448
BtrI CACGTC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 498, 700
Cac8I GCNNGC 2 cut(s) 80, 429
Cfr10I RCCGGY 2 cut(s) 43, 78
Cfr13I GGNCC 2 cut(s) 64, 743
Cfr42I CCGCGG 1 cut(s) 62
ClaI ATCGAT 2 cut(s) 226, 795
CseI GACGC 2 cut(s) 3, 306
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 4 cut(s) 368, 469, 851, 1039
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 7 cut(s) 136, 172, 273, 424, 436, 736, 773
CviQI GTAC 4 cut(s) 368, 469, 851, 1039
DdeI CTNAG 1 cut(s) 479
DpnI GATC 4 cut(s) 54, 130, 572, 794
DpnII GATC 4 cut(s) 52, 128, 570, 792
DraI TTTAAA 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 64, 743
Eco53kI GAGCTC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 803
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 600
Eco91I GGTNACC 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 599
EcoO65I GGTNACC 1 cut(s) 776
EcoRII CCWGG 1 cut(s) 817
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 2 cut(s) 84, 289
FaeI CATG 7 cut(s) 139, 175, 276, 427, 439, 739, 776
FalI AAGNNNNNCTT 2 cut(s) 926, 958
FaqI GGGAC 1 cut(s) 77
FatI CATG 7 cut(s) 135, 171, 272, 423, 435, 735, 772
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 41, 159, 210
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 3 cut(s) 41, 159, 210
FspBI CTAG 3 cut(s) 74, 234, 428
GluI GCNGC 3 cut(s) 41, 159, 210
GsaI CCCAGC 3 cut(s) 327, 531, 964
GsuI CTGGAG 2 cut(s) 426, 615
HaeIII GGCC 6 cut(s) 78, 176, 338, 699, 714, 978
HapII CCGG 3 cut(s) 24, 44, 79
HgaI GACGC 2 cut(s) 3, 306
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 139, 175, 276, 427, 439, 739, 776
HinfI GANTC 4 cut(s) 228, 329, 440, 732
HpaII CCGG 3 cut(s) 24, 44, 79
HphI GGTGA 5 cut(s) 205, 520, 788, 807, 976
Hpy166II GTNNAC 3 cut(s) 471, 743, 851
Hpy188I TCNGA 4 cut(s) 52, 89, 261, 346
Hpy188III TCNNGA 4 cut(s) 481, 602, 865, 1032
Hpy8I GTNNAC 3 cut(s) 471, 743, 851
Hpy99I CGWCG 4 cut(s) 19, 98, 101, 793
HpyAV CCTTC 2 cut(s) 928, 989
HpyCH4III ACNGT 2 cut(s) 493, 875
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 161, 182, 239, 584, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 705
HpyF3I CTNAG 1 cut(s) 479
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 139, 175, 276, 427, 439, 739, 776
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 4 cut(s) 52, 128, 570, 792
LmnI GCTCC 3 cut(s) 149, 407, 596
Lsp1109I GCAGC 3 cut(s) 27, 145, 221
LweI GCATC 2 cut(s) 27, 607
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 3 cut(s) 74, 234, 428
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 776, 813, 926
MalI GATC 4 cut(s) 54, 130, 572, 794
MboI GATC 4 cut(s) 52, 128, 570, 792
MboII GAAGA 7 cut(s) 210, 316, 388, 397, 631, 796, 853
MflI RGATCY 2 cut(s) 52, 128
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 5 cut(s) 31, 162, 868, 898, 918
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 3 cut(s) 535, 544, 672
MnlI CCTC 9 cut(s) 3, 66, 97, 100, 103, 343, 408, 477, 488
MroNI GCCGGC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 938
MseI TTAA 3 cut(s) 123, 702, 885
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 2 cut(s) 61, 323
MspI CCGG 3 cut(s) 24, 44, 79
MspR9I CCNGG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 857
MvaI CCWGG 1 cut(s) 819
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 705
NaeI GCCGGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 52, 128, 570, 792
NgoMIV GCCGGC 1 cut(s) 78
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 7 cut(s) 139, 175, 276, 427, 439, 739, 776
NlaIV GGNNCC 5 cut(s) 54, 65, 130, 151, 409
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 2 cut(s) 776, 813
NspI RCATGY 1 cut(s) 427
OliI CACNNNNGTG 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 857
PdiI GCCGGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 938
PfeI GAWTC 3 cut(s) 228, 329, 732
PkrI GCNGC 3 cut(s) 42, 160, 211
Ple19I CGATCG 1 cut(s) 795
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 817
PspEI GGTNACC 1 cut(s) 776
PspFI CCCAGC 3 cut(s) 323, 527, 960
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 5 cut(s) 54, 65, 130, 151, 409
PspPI GGNCC 2 cut(s) 64, 743
PsuI RGATCY 2 cut(s) 52, 128
PvuI CGATCG 1 cut(s) 795
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 4 cut(s) 369, 470, 852, 1040
RsaNI GTAC 4 cut(s) 368, 469, 851, 1039
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 601
SacII CCGCGG 1 cut(s) 62
SaqAI TTAA 3 cut(s) 123, 702, 885
SatI GCNGC 3 cut(s) 41, 159, 210
Sau3AI GATC 4 cut(s) 52, 128, 570, 792
Sau96I GGNCC 2 cut(s) 64, 743
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 819
SduI GDGCHC 1 cut(s) 601
SexAI ACCWGGT 1 cut(s) 817
SfaNI GCATC 2 cut(s) 27, 607
SfcI CTRYAG 2 cut(s) 489, 678
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SinI GGWCC 2 cut(s) 64, 743
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 5 cut(s) 31, 162, 868, 898, 918
SsiI CCGC 4 cut(s) 59, 61, 132, 924
SspMI CTAG 3 cut(s) 74, 234, 428
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 1 cut(s) 817
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 2 cut(s) 493, 875
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 17, 226, 795
TasI AATT 5 cut(s) 31, 162, 868, 898, 918
TatI WGTACW 2 cut(s) 468, 850
TfiI GAWTC 3 cut(s) 228, 329, 732
Tru1I TTAA 3 cut(s) 123, 702, 885
Tru9I TTAA 3 cut(s) 123, 702, 885
TscAI CASTG 3 cut(s) 189, 498, 700
TseFI GTSAC 2 cut(s) 776, 813
TseI GCWGC 3 cut(s) 40, 158, 209
Tsp45I GTSAC 2 cut(s) 776, 813
TspDTI ATGAA 2 cut(s) 261, 761
TspGWI ACGGA 2 cut(s) 437, 700
TspRI CASTG 3 cut(s) 189, 498, 700
VpaK11BI GGWCC 2 cut(s) 64, 743
XapI RAATTY 2 cut(s) 31, 898
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 938
XspI CTAG 3 cut(s) 74, 234, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.