RLG00000011560

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015344
Physical Location & Seq
Forward (+)
10536063 .. 10539659
3597 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011560

Sequence Viewer

Length: 1077 bp
ATGCCTGTGAGGGCGTCGAGTTCCGGCAAGAATTTGACGCTGCCGGTATCGGATCCTCCGCGGGACCAAGAGCTAGGCCGGCTCATCGGAGACGACGACGATGAGGAGGAGGAGGAGAAGCTCTTCAAAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCAATTTCTTACATGGCCTGTGCAGTGTTGTTGGTGATGTTCAACAAAGCAGCACTCTCTTCTTATCGATTCCCTAGTGCAAATGTCATCACACTCTTTCAGATGATATGTTCATGTTTCTTTCTATATACCTTGAGACGCTGGAAGATGATTACTTTCACAGCTGGGGAATCCTCGGCCTTTTCTGATATCAACACCACAACACTTGTACCGTTGAAGACTCTGAAGAAAACATTTCCTCTTGCTGGAGCCTATTTGCTATACATGCTAGCCACCATGGAGTCTGTCCGTGGAGTAAATGTTCCAATGTACACCACCCTCAGGAGGACTACAGTGGTTTTCACAATGGTGATGGAGTATTTTCTGGCTGGGCAGAGATATACATCTCCTATTGTTGGAAGTGTTGGACTGATCGTTCTTGGTGCATTTATTGCTGGAGCTCGGGATTTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTCTTATCCAACATCACAACAGCAATATATCTTGCAACTATAGCCCGTATTGGGAAATCCAGTGGCCTCAATAGCTTTGGCCTTATGTGGTGTAATGGAATCATATGTGGACCAGCTTTGCTTGTTTTGACTTTTTTTCATGGTGACCTGAAGACGACAATCGATTTTCCTTATCTGCTGTCACCTGGTTTTATGGTTGTCTTGCTCTGTTCCTGTGTACTGGCATTCTTCCTGAATTACTGCATATTTCTTAATACGACACTAAATTCAGCACTAACGCAGACAATTTGCGGTAACTTGAAGGATTTCTTTACCATTGGACTTGGCTGGGTGATATTTGGTGGCCTTCCATTTGATATTTTGAATGTCATTGGGCAATGTCTCGGTTTTCTTGGTTCTGGATTGTACGCCTACAATAAGCTCATGGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

359

Amino Acids

39.25

Weight (kDa)

8.61

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 60 - 350 1.3e-13 Triose-phosphate Transporter family
UAA PF08449 76 - 353 1.4e-08 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 4 cut(s) 59, 61, 135, 933
AclWI GGATC 4 cut(s) 47, 60, 126, 139
AcsI RAATTY 2 cut(s) 31, 907
AcuI CTGAAG 2 cut(s) 407, 812
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 4 cut(s) 372, 473, 861, 1049
AfiI CCNNNNNNNGG 5 cut(s) 407, 483, 486, 557, 693
AgsI TTSAA 5 cut(s) 127, 205, 379, 943, 1006
AjiI CACGTC 1 cut(s) 149
AjnI CCWGG 1 cut(s) 826
AleI CACNNNNGTG 1 cut(s) 509
AloI GAACNNNNNNTCC 4 cut(s) 447, 479, 561, 593
AluBI AGCT 7 cut(s) 73, 121, 326, 602, 717, 758, 1063
AluI AGCT 7 cut(s) 73, 121, 326, 602, 717, 758, 1063
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 3 cut(s) 84, 292, 1028
AlwI GGATC 4 cut(s) 47, 60, 126, 139
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 6 cut(s) 76, 177, 339, 706, 721, 985
ApeKI GCWGC 3 cut(s) 40, 161, 212
ApoI RAATTY 2 cut(s) 31, 907
Asp700I GAANNNNTTC 2 cut(s) 122, 947
AspS9I GGNCC 2 cut(s) 64, 752
AsuHPI GGTGA 5 cut(s) 208, 523, 797, 816, 985
AsuNHI GCTAGC 1 cut(s) 430
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 64, 752
AxyI CCTNAGG 1 cut(s) 482
BaeI ACNNNNGTAYC 2 cut(s) 354, 387
BamHI GGATCC 2 cut(s) 52, 131
BanII GRGCYC 1 cut(s) 604
BbsI GAAGAC 3 cut(s) 386, 634, 800
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 3 cut(s) 27, 148, 224
BccI CCATC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 828
BcoDI GTCTC 3 cut(s) 84, 292, 1028
BfaI CTAG 3 cut(s) 74, 237, 431
BfmI CTRYAG 2 cut(s) 492, 681
BisI GCNGC 3 cut(s) 41, 162, 213
BlsI GCNGC 3 cut(s) 42, 163, 214
Bme1390I CCNGG 1 cut(s) 828
Bme18I GGWCC 2 cut(s) 64, 752
BmeT110I CYCGRG 1 cut(s) 603
BmgBI CACGTC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 64, 752
BmiI GGNNCC 5 cut(s) 54, 65, 133, 154, 412
BmrFI CCNGG 1 cut(s) 828
BmsI GCATC 1 cut(s) 610
BmtI GCTAGC 1 cut(s) 434
BpiI GAAGAC 3 cut(s) 386, 634, 800
BpmI CTGGAG 2 cut(s) 429, 618
BpuEI CTTGAG 1 cut(s) 316
Bsa29I ATCGAT 2 cut(s) 229, 804
BsaBI GATNNNNATC 1 cut(s) 544
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 4 cut(s) 59, 336, 438, 451
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 5 cut(s) 407, 483, 486, 557, 693
Bse118I RCCGGY 2 cut(s) 43, 78
Bse1I ACTGG 2 cut(s) 702, 867
Bse21I CCTNAGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 1025
Bse8I GATNNNNATC 1 cut(s) 544
BseBI CCWGG 1 cut(s) 828
BseCI ATCGAT 2 cut(s) 229, 804
BseDI CCNNGG 4 cut(s) 59, 336, 438, 451
BseJI GATNNNNATC 1 cut(s) 544
BseLI CCNNNNNNNGG 5 cut(s) 407, 483, 486, 557, 693
BseMI GCAATG 1 cut(s) 1025
BseMII CTCAG 1 cut(s) 496
BseNI ACTGG 2 cut(s) 702, 867
BseRI GAGGAG 4 cut(s) 119, 122, 125, 128
BseXI GCAGC 3 cut(s) 27, 148, 224
BseYI CCCAGC 3 cut(s) 326, 530, 969
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 6 cut(s) 78, 179, 341, 708, 723, 987
BshVI ATCGAT 2 cut(s) 229, 804
BsiHKAI GWGCWC 1 cut(s) 604
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 3 cut(s) 24, 44, 79
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 5 cut(s) 407, 483, 486, 557, 693
BsmAI GTCTC 3 cut(s) 84, 292, 1028
BsmBI CGTCTC 2 cut(s) 84, 292
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 866
BsnI GGCC 6 cut(s) 78, 179, 341, 708, 723, 987
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 3 cut(s) 52, 131, 573
Bsp19I CCATGG 1 cut(s) 438
BspACI CCGC 4 cut(s) 59, 61, 135, 933
BspANI GGCC 6 cut(s) 78, 179, 341, 708, 723, 987
BspCNI CTCAG 1 cut(s) 495
BspDI ATCGAT 2 cut(s) 229, 804
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 54, 65, 133, 154, 412
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 4 cut(s) 47, 60, 126, 139
BspQI GCTCTTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 1025
BsrFI RCCGGY 2 cut(s) 43, 78
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 2 cut(s) 702, 867
BssAI RCCGGY 2 cut(s) 43, 78
BssECI CCNNGG 4 cut(s) 59, 336, 438, 451
BssMI GATC 3 cut(s) 52, 131, 573
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 2 cut(s) 375, 496
Bst6I CTCTTC 2 cut(s) 128, 226
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 593
BstAUI TGTACA 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 80, 432
BstDEI CTNAG 1 cut(s) 482
BstDSI CCRYGG 3 cut(s) 59, 438, 451
BstEII GGTNACC 1 cut(s) 785
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 3 cut(s) 55, 134, 576
BstMAI GTCTC 3 cut(s) 84, 292, 1028
BstMBI GATC 3 cut(s) 52, 131, 573
BstMWI GCNNNNNNNGC 6 cut(s) 79, 161, 427, 593, 683, 714
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 430
BstPI GGTNACC 1 cut(s) 785
BstSCI CCNGG 1 cut(s) 826
BstSFI CTRYAG 2 cut(s) 492, 681
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 27, 148, 224
BstV2I GAAGAC 3 cut(s) 386, 634, 800
BstX2I RGATCY 2 cut(s) 52, 131
BstYI RGATCY 2 cut(s) 52, 131
Bsu15I ATCGAT 2 cut(s) 229, 804
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 6 cut(s) 78, 179, 341, 708, 723, 987
BsuTUI ATCGAT 2 cut(s) 229, 804
BtgI CCRYGG 3 cut(s) 59, 438, 451
BtrI CACGTC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 3 cut(s) 192, 501, 709
Cac8I GCNNGC 2 cut(s) 80, 432
Cfr10I RCCGGY 2 cut(s) 43, 78
Cfr13I GGNCC 2 cut(s) 64, 752
Cfr42I CCGCGG 1 cut(s) 62
ClaI ATCGAT 2 cut(s) 229, 804
CseI GACGC 3 cut(s) 3, 46, 309
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 4 cut(s) 371, 472, 860, 1048
CspCI CAANNNNNGTGG 2 cut(s) 349, 384
CviAII CATG 7 cut(s) 139, 175, 276, 427, 439, 782, 1066
CviQI GTAC 4 cut(s) 371, 472, 860, 1048
DdeI CTNAG 1 cut(s) 482
DpnI GATC 3 cut(s) 54, 133, 575
DpnII GATC 3 cut(s) 52, 131, 573
Eam1104I CTCTTC 2 cut(s) 128, 226
EarI CTCTTC 2 cut(s) 128, 226
EciI GGCGGA 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 604
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 64, 752
Eco53kI GAGCTC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 407, 812
Eco81I CCTNAGG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 785
EcoICRI GAGCTC 1 cut(s) 602
EcoO65I GGTNACC 1 cut(s) 785
EcoRII CCWGG 1 cut(s) 826
EcoRV GATATC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 438
EcoT38I GRGCYC 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 438
Esp3I CGTCTC 2 cut(s) 84, 292
FaeI CATG 7 cut(s) 142, 178, 279, 430, 442, 785, 1069
FalI AAGNNNNNCTT 2 cut(s) 935, 967
FaqI GGGAC 1 cut(s) 77
FatI CATG 7 cut(s) 138, 174, 275, 426, 438, 781, 1065
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 746
Fnu4HI GCNGC 3 cut(s) 41, 162, 213
FriOI GRGCYC 1 cut(s) 604
Fsp4HI GCNGC 3 cut(s) 41, 162, 213
FspBI CTAG 3 cut(s) 74, 237, 431
GluI GCNGC 3 cut(s) 41, 162, 213
GsaI CCCAGC 3 cut(s) 330, 534, 973
GsuI CTGGAG 2 cut(s) 429, 618
HaeIII GGCC 6 cut(s) 78, 179, 341, 708, 723, 987
HapII CCGG 3 cut(s) 24, 44, 79
HgaI GACGC 3 cut(s) 3, 46, 309
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 7 cut(s) 142, 178, 279, 430, 442, 785, 1069
HinfI GANTC 5 cut(s) 231, 332, 382, 443, 741
HpaII CCGG 3 cut(s) 24, 44, 79
HphI GGTGA 5 cut(s) 208, 523, 797, 816, 985
Hpy166II GTNNAC 3 cut(s) 474, 752, 860
Hpy188I TCNGA 5 cut(s) 52, 89, 264, 349, 387
Hpy188III TCNNGA 4 cut(s) 484, 605, 874, 1041
Hpy8I GTNNAC 3 cut(s) 474, 752, 860
Hpy99I CGWCG 3 cut(s) 19, 98, 101
HpyAV CCTTC 2 cut(s) 937, 998
HpyCH4III ACNGT 2 cut(s) 375, 496
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 6 cut(s) 164, 185, 242, 587, 677, 885
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 161, 427, 593, 683, 714
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 148
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 7 cut(s) 142, 178, 279, 430, 442, 785, 1069
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 3 cut(s) 52, 131, 573
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 3 cut(s) 152, 410, 599
Lsp1109I GCAGC 3 cut(s) 27, 148, 224
LweI GCATC 1 cut(s) 610
MabI ACCWGGT 1 cut(s) 826
MaeI CTAG 3 cut(s) 74, 237, 431
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 3 cut(s) 785, 822, 935
MalI GATC 3 cut(s) 54, 133, 575
MboI GATC 3 cut(s) 52, 131, 573
MboII GAAGA 8 cut(s) 115, 213, 319, 391, 400, 634, 805, 862
MflI RGATCY 2 cut(s) 52, 131
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 5 cut(s) 31, 165, 877, 907, 927
MlyI GAGTC 2 cut(s) 376, 452
MmeI TCCRAC 3 cut(s) 538, 547, 675
MroNI GCCGGC 1 cut(s) 78
MroXI GAANNNNTTC 2 cut(s) 122, 947
MseI TTAA 1 cut(s) 894
MslI CAYNNNNRTG 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 61, 326
MspI CCGG 3 cut(s) 24, 44, 79
MspR9I CCNGG 1 cut(s) 828
Mva1269I GAATGC 1 cut(s) 866
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 6 cut(s) 79, 161, 427, 593, 683, 714
NaeI GCCGGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 438
NdeI CATATG 1 cut(s) 746
NdeII GATC 3 cut(s) 52, 131, 573
NgoMIV GCCGGC 1 cut(s) 78
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 7 cut(s) 142, 178, 279, 430, 442, 785, 1069
NlaIV GGNNCC 5 cut(s) 54, 65, 133, 154, 412
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 785, 822
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 866
PdiI GCCGGC 1 cut(s) 80
PdmI GAANNNNTTC 2 cut(s) 122, 947
PfeI GAWTC 3 cut(s) 231, 332, 741
PkrI GCNGC 3 cut(s) 42, 163, 214
PleI GAGTC 2 cut(s) 376, 451
PpsI GAGTC 2 cut(s) 376, 451
Psp124BI GAGCTC 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 826
PspEI GGTNACC 1 cut(s) 785
PspFI CCCAGC 3 cut(s) 326, 530, 969
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 5 cut(s) 54, 65, 133, 154, 412
PspPI GGNCC 2 cut(s) 64, 752
PsuI RGATCY 2 cut(s) 52, 131
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 4 cut(s) 372, 473, 861, 1049
RsaNI GTAC 4 cut(s) 371, 472, 860, 1048
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 604
SacII CCGCGG 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 894
SatI GCNGC 3 cut(s) 41, 162, 213
Sau3AI GATC 3 cut(s) 52, 131, 573
Sau96I GGNCC 2 cut(s) 64, 752
SchI GAGTC 2 cut(s) 376, 452
ScrFI CCNGG 1 cut(s) 828
SduI GDGCHC 1 cut(s) 604
SexAI ACCWGGT 1 cut(s) 826
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 2 cut(s) 492, 681
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SinI GGWCC 2 cut(s) 64, 752
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 5 cut(s) 31, 165, 877, 907, 927
SsiI CCGC 4 cut(s) 59, 61, 135, 933
SspMI CTAG 3 cut(s) 74, 237, 431
SstI GAGCTC 1 cut(s) 604
StyD4I CCNGG 1 cut(s) 826
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 375, 496
TaiI ACGT 1 cut(s) 151
TaqI TCGA 3 cut(s) 17, 229, 804
TasI AATT 5 cut(s) 31, 165, 877, 907, 927
TatI WGTACW 2 cut(s) 471, 859
TfiI GAWTC 3 cut(s) 231, 332, 741
Tru1I TTAA 1 cut(s) 894
Tru9I TTAA 1 cut(s) 894
TscAI CASTG 3 cut(s) 192, 501, 709
TseFI GTSAC 2 cut(s) 785, 822
TseI GCWGC 3 cut(s) 40, 161, 212
Tsp45I GTSAC 2 cut(s) 785, 822
TspDTI ATGAA 2 cut(s) 264, 770
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 3 cut(s) 192, 501, 709
VpaK11BI GGWCC 2 cut(s) 64, 752
XapI RAATTY 2 cut(s) 31, 907
XceI RCATGY 1 cut(s) 430
XmnI GAANNNNTTC 2 cut(s) 122, 947
XspI CTAG 3 cut(s) 74, 237, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.