RchiOBHm_Chr6g0297811

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015344
Physical Location & Seq
Reverse (-)
59457727 .. 59462048
4322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26732

Sequence Viewer

Length: 1074 bp
ATGCCTGTGAGGGCGTCGAGTTCCGGCAAGAATTTGATGCTGCCGGTATCGGATCCTCCGCGGGACCAAGAGCTAGGCCGGCTCATCGGAGACGACGACGATGAGGATGAGGAGAAGCTCTTTAAAGGATCGGCCATGACCAGACGTGGAGCCTACGCTGCAATTTCTTACATGGCCTGTGCAGTGTTGTTGGTGATGTTCAACAAAGCAGCACTCTCTTCTTATCGATTCCCTAGTGCAAATGTCATCACACTCTTTCAGATGATATGTTCATGTTTCTTTCTATATACCTTGAGACGCTGGAAGATGATTACTTTCACAGCTGGGGAATCCTCAGCCTTTTCTGATATCAACACCACAACACTTGTACCGTTGAAGACTTTGAAGAAAACATTTCCTCTTGCTGGAGCCTATTTGCTATACATGCTAGCCTCCATGGAGTCTGTCCGTGGAGTAAATGTTCCAATGTACACTACCCTCAGGAGGACTACAGTGGTTTTCACAATGGTGATGGAGTATTTTCTGGCTGGGCAGAGATATACATCTCCTATTGTTGGAAGTGTTGGACTGATCGTTCTTGGTGCATTTATTGCTGGAGCTCGGGATTTGTCATTTGATGCCTATGGCTATGCTGTTGTCTTCTTATCCAACATCACAACAGCAATATATCTTGCAACTATAGCCCGTATTGGGAAATCCAGTGGCCTCAATAGCTTTGGCCTTATGTGGTGTAATGGAATCATATGTGGACCAGCTTTGCTTGTTTTGACTTTTTTTCATGGTGACTTGAAGACGACGATCGATTTTCCTTATCTGCTGTCACCTGGTTTTATGGTTGTCTTGCTTTGTTCCTGTGTCCTGGCATTCTTCCTGAATTACTGTATATTTCTTAATACGACACTAAATTCAGCACTAACGCAGACAATTTGCGGTAACTTGAAGGATTTCTTTACCATTGGACTTGGCTGGGTGATATTTGGTGGCCTTCCATTTGATATTTTGAATGTCATTGGGCAATTTCTCGGTTTTCTTGGTTCTGGCTTGTACGCCTACAATAAGCTCATAGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

357

Amino Acids

39.15

Weight (kDa)

8.78

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 59 - 349 6.4e-13 Triose-phosphate Transporter family
UAA PF08449 75 - 352 1.2e-08 UAA transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 59, 61, 930
AclWI GGATC 3 cut(s) 47, 60, 136
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 31, 904
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 3 cut(s) 369, 470, 1046
AfiI CCNNNNNNNGG 4 cut(s) 404, 483, 554, 690
AgsI TTSAA 6 cut(s) 202, 376, 385, 790, 940, 1003
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 2 cut(s) 823, 858
AleI CACNNNNGTG 1 cut(s) 506
AloI GAACNNNNNNTCC 4 cut(s) 444, 476, 558, 590
AluBI AGCT 7 cut(s) 73, 118, 323, 599, 714, 755, 1060
AluI AGCT 7 cut(s) 73, 118, 323, 599, 714, 755, 1060
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 2 cut(s) 84, 289
AlwI GGATC 3 cut(s) 47, 60, 136
Ama87I CYCGRG 1 cut(s) 600
AoxI GGCC 6 cut(s) 76, 132, 174, 703, 718, 982
ApeKI GCWGC 3 cut(s) 40, 158, 209
ApoI RAATTY 2 cut(s) 31, 904
Asp700I GAANNNNTTC 1 cut(s) 944
AspS9I GGNCC 2 cut(s) 64, 749
AsuHPI GGTGA 5 cut(s) 205, 520, 794, 813, 982
AsuNHI GCTAGC 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 600
AvaII GGWCC 2 cut(s) 64, 749
AxyI CCTNAGG 1 cut(s) 479
BaeI ACNNNNGTAYC 2 cut(s) 351, 384
BamHI GGATCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 601
BbsI GAAGAC 3 cut(s) 383, 631, 797
Bbv12I GWGCWC 1 cut(s) 601
BbvCI CCTCAGC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 27, 145, 221
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 825, 860
BcoDI GTCTC 2 cut(s) 84, 289
BfaI CTAG 3 cut(s) 74, 234, 428
BfmI CTRYAG 2 cut(s) 489, 678
BisI GCNGC 3 cut(s) 41, 159, 210
BlsI GCNGC 3 cut(s) 42, 160, 211
Bme1390I CCNGG 2 cut(s) 825, 860
Bme18I GGWCC 2 cut(s) 64, 749
BmeT110I CYCGRG 1 cut(s) 600
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 64, 749
BmiI GGNNCC 4 cut(s) 54, 65, 151, 409
BmrFI CCNGG 2 cut(s) 825, 860
BmsI GCATC 2 cut(s) 27, 607
BmtI GCTAGC 1 cut(s) 431
BpiI GAAGAC 3 cut(s) 383, 631, 797
BpmI CTGGAG 2 cut(s) 426, 615
Bpu10I CCTNAGC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 313
Bsa29I ATCGAT 2 cut(s) 226, 801
BsaBI GATNNNNATC 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 59, 435, 448
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 4 cut(s) 404, 483, 554, 690
Bse118I RCCGGY 2 cut(s) 43, 78
Bse1I ACTGG 1 cut(s) 699
Bse21I CCTNAGG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 2 cut(s) 825, 860
BseCI ATCGAT 2 cut(s) 226, 801
BseDI CCNNGG 3 cut(s) 59, 435, 448
BseGI GGATG 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 4 cut(s) 404, 483, 554, 690
BseMII CTCAG 2 cut(s) 348, 493
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 27, 145, 221
BseYI CCCAGC 3 cut(s) 323, 527, 966
BsgI GTGCAG 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 801
BshFI GGCC 6 cut(s) 78, 134, 176, 705, 720, 984
BshVI ATCGAT 2 cut(s) 226, 801
BsiEI CGRYCG 1 cut(s) 801
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 600
BsiSI CCGG 3 cut(s) 24, 44, 79
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 4 cut(s) 404, 483, 554, 690
BsmAI GTCTC 2 cut(s) 84, 289
BsmBI CGTCTC 2 cut(s) 84, 289
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 863
BsnI GGCC 6 cut(s) 78, 134, 176, 705, 720, 984
BsoBI CYCGRG 1 cut(s) 600
Bsp1286I GDGCHC 1 cut(s) 601
Bsp1407I TGTACA 1 cut(s) 468
Bsp143I GATC 4 cut(s) 52, 128, 570, 798
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 3 cut(s) 59, 61, 930
BspANI GGCC 6 cut(s) 78, 134, 176, 705, 720, 984
BspCNI CTCAG 2 cut(s) 347, 492
BspDI ATCGAT 2 cut(s) 226, 801
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 54, 65, 151, 409
BspOI GCTAGC 1 cut(s) 431
BspPI GGATC 3 cut(s) 47, 60, 136
BsrFI RCCGGY 2 cut(s) 43, 78
BsrGI TGTACA 1 cut(s) 468
BsrI ACTGG 1 cut(s) 699
BssAI RCCGGY 2 cut(s) 43, 78
BssECI CCNNGG 3 cut(s) 59, 435, 448
BssMI GATC 4 cut(s) 52, 128, 570, 798
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 435
Bst2UI CCWGG 2 cut(s) 825, 860
Bst4CI ACNGT 3 cut(s) 372, 493, 881
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 590
BstAUI TGTACA 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 80, 429
BstDEI CTNAG 2 cut(s) 334, 479
BstDSI CCRYGG 3 cut(s) 59, 435, 448
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 4 cut(s) 55, 131, 573, 801
BstMAI GTCTC 2 cut(s) 84, 289
BstMBI GATC 4 cut(s) 52, 128, 570, 798
BstMCI CGRYCG 1 cut(s) 801
BstMWI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 711
BstNI CCWGG 2 cut(s) 825, 860
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 823, 858
BstSFI CTRYAG 2 cut(s) 489, 678
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 27, 145, 221
BstV2I GAAGAC 3 cut(s) 383, 631, 797
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
Bsu15I ATCGAT 2 cut(s) 226, 801
Bsu36I CCTNAGG 1 cut(s) 479
BsuRI GGCC 6 cut(s) 78, 134, 176, 705, 720, 984
BsuTUI ATCGAT 2 cut(s) 226, 801
BtgI CCRYGG 3 cut(s) 59, 435, 448
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 498, 706
Cac8I GCNNGC 2 cut(s) 80, 429
Cfr10I RCCGGY 2 cut(s) 43, 78
Cfr13I GGNCC 2 cut(s) 64, 749
Cfr42I CCGCGG 1 cut(s) 62
ClaI ATCGAT 2 cut(s) 226, 801
CseI GACGC 2 cut(s) 3, 306
CsiI ACCWGGT 1 cut(s) 823
Csp6I GTAC 3 cut(s) 368, 469, 1045
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 6 cut(s) 136, 172, 273, 424, 436, 779
CviQI GTAC 3 cut(s) 368, 469, 1045
DdeI CTNAG 2 cut(s) 334, 479
DpnI GATC 4 cut(s) 54, 130, 572, 800
DpnII GATC 4 cut(s) 52, 128, 570, 798
DraI TTTAAA 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 601
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 64, 749
Eco53kI GAGCTC 1 cut(s) 599
Eco81I CCTNAGG 1 cut(s) 479
Eco88I CYCGRG 1 cut(s) 600
EcoICRI GAGCTC 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 823, 858
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 1 cut(s) 435
Esp3I CGTCTC 2 cut(s) 84, 289
FaeI CATG 6 cut(s) 139, 175, 276, 427, 439, 782
FalI AAGNNNNNCTT 2 cut(s) 932, 964
FaqI GGGAC 1 cut(s) 77
FatI CATG 6 cut(s) 135, 171, 272, 423, 435, 778
FauI CCCGC 1 cut(s) 54
FauNDI CATATG 1 cut(s) 743
Fnu4HI GCNGC 3 cut(s) 41, 159, 210
FokI GGATG 1 cut(s) 119
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 3 cut(s) 41, 159, 210
FspBI CTAG 3 cut(s) 74, 234, 428
GluI GCNGC 3 cut(s) 41, 159, 210
GsaI CCCAGC 3 cut(s) 327, 531, 970
GsuI CTGGAG 2 cut(s) 426, 615
HaeIII GGCC 6 cut(s) 78, 134, 176, 705, 720, 984
HapII CCGG 3 cut(s) 24, 44, 79
HgaI GACGC 2 cut(s) 3, 306
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 139, 175, 276, 427, 439, 782
HinfI GANTC 4 cut(s) 228, 329, 440, 738
HpaII CCGG 3 cut(s) 24, 44, 79
HphI GGTGA 5 cut(s) 205, 520, 794, 813, 982
Hpy166II GTNNAC 2 cut(s) 471, 749
Hpy188I TCNGA 4 cut(s) 52, 89, 261, 346
Hpy188III TCNNGA 3 cut(s) 481, 602, 871
Hpy8I GTNNAC 2 cut(s) 471, 749
Hpy99I CGWCG 4 cut(s) 19, 98, 101, 799
HpyAV CCTTC 2 cut(s) 934, 995
HpyCH4III ACNGT 3 cut(s) 372, 493, 881
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 5 cut(s) 161, 182, 239, 584, 674
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 711
HpyF3I CTNAG 2 cut(s) 334, 479
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 139, 175, 276, 427, 439, 782
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 4 cut(s) 52, 128, 570, 798
LmnI GCTCC 3 cut(s) 149, 407, 596
Lsp1109I GCAGC 3 cut(s) 27, 145, 221
LweI GCATC 2 cut(s) 27, 607
MabI ACCWGGT 1 cut(s) 823
MaeI CTAG 3 cut(s) 74, 234, 428
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 782, 819, 932
MalI GATC 4 cut(s) 54, 130, 572, 800
MboI GATC 4 cut(s) 52, 128, 570, 798
MboII GAAGA 7 cut(s) 210, 316, 388, 397, 631, 802, 859
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 6 cut(s) 31, 162, 874, 904, 924, 1016
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 3 cut(s) 535, 544, 672
MroNI GCCGGC 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 944
MseI TTAA 2 cut(s) 123, 891
MslI CAYNNNNRTG 1 cut(s) 506
MspA1I CMGCKG 2 cut(s) 61, 323
MspI CCGG 3 cut(s) 24, 44, 79
MspR9I CCNGG 2 cut(s) 825, 860
Mva1269I GAATGC 1 cut(s) 863
MvaI CCWGG 2 cut(s) 825, 860
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 6 cut(s) 79, 158, 424, 590, 680, 711
NaeI GCCGGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 435
NdeI CATATG 1 cut(s) 743
NdeII GATC 4 cut(s) 52, 128, 570, 798
NgoMIV GCCGGC 1 cut(s) 78
NheI GCTAGC 1 cut(s) 427
NlaIII CATG 6 cut(s) 139, 175, 276, 427, 439, 782
NlaIV GGNNCC 4 cut(s) 54, 65, 151, 409
NmuCI GTSAC 2 cut(s) 782, 819
NspI RCATGY 1 cut(s) 427
OliI CACNNNNGTG 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 863
PdiI GCCGGC 1 cut(s) 80
PdmI GAANNNNTTC 1 cut(s) 944
PfeI GAWTC 3 cut(s) 228, 329, 738
PkrI GCNGC 3 cut(s) 42, 160, 211
Ple19I CGATCG 1 cut(s) 801
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 823, 858
PspFI CCCAGC 3 cut(s) 323, 527, 966
PspGI CCWGG 2 cut(s) 823, 858
PspN4I GGNNCC 4 cut(s) 54, 65, 151, 409
PspPI GGNCC 2 cut(s) 64, 749
PsuI RGATCY 1 cut(s) 52
PvuI CGATCG 1 cut(s) 801
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 3 cut(s) 369, 470, 1046
RsaNI GTAC 3 cut(s) 368, 469, 1045
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 601
SacII CCGCGG 1 cut(s) 62
SaqAI TTAA 2 cut(s) 123, 891
SatI GCNGC 3 cut(s) 41, 159, 210
Sau3AI GATC 4 cut(s) 52, 128, 570, 798
Sau96I GGNCC 2 cut(s) 64, 749
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 825, 860
SduI GDGCHC 1 cut(s) 601
SexAI ACCWGGT 1 cut(s) 823
SfaNI GCATC 2 cut(s) 27, 607
SfcI CTRYAG 2 cut(s) 489, 678
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SinI GGWCC 2 cut(s) 64, 749
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 6 cut(s) 31, 162, 874, 904, 924, 1016
SsiI CCGC 3 cut(s) 59, 61, 930
SspMI CTAG 3 cut(s) 74, 234, 428
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 2 cut(s) 823, 858
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 372, 493, 881
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 17, 226, 801
TasI AATT 6 cut(s) 31, 162, 874, 904, 924, 1016
TatI WGTACW 1 cut(s) 468
TfiI GAWTC 3 cut(s) 228, 329, 738
Tru1I TTAA 2 cut(s) 123, 891
Tru9I TTAA 2 cut(s) 123, 891
TscAI CASTG 3 cut(s) 189, 498, 706
TseFI GTSAC 2 cut(s) 782, 819
TseI GCWGC 3 cut(s) 40, 158, 209
Tsp45I GTSAC 2 cut(s) 782, 819
TspDTI ATGAA 2 cut(s) 261, 767
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 3 cut(s) 189, 498, 706
VpaK11BI GGWCC 2 cut(s) 64, 749
XapI RAATTY 2 cut(s) 31, 904
XceI RCATGY 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 944
XspI CTAG 3 cut(s) 74, 234, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.