Prupe.1G481800_v2.0.a1

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015344
Physical Location & Seq
Forward (+)
40215648 .. 40219569
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G481800.1

Sequence Viewer

Length: 1065 bp
ATGTCTCTGAAGGCGTCGAGTTCGGGCAAGAATTTGATACTGCCAGTATCGGATTCTCCAAGAGACCTGGAGAGAGAGAGACTCGTCGGAGACGATAACGATGAGAAGCTTTTCAGAGGATCCGCCATGACCAGACGTGGAGCCTACGCTGCAATCTCTTACATGGCCTGCGCAGTGTTATTGGTGATGTTCAACAAAGCAGCTCTCTCTTCTTATAAATTTCCGAGTGCAAATGTTATCACACTCTTTCAGATGATATGTTCATGTGGTTTTCTCTATGCCTTGAGACGGTGGAAGATGATTTCTTTCACCGTAGGTGAATCTTTGACCATTTCTGATGACAATATCACAACACTTGTACCGTTAAAGACATTGAAGAAAACCCTTCCTCTTGCCGGAGCCTATTTGCTGTACATGCTAGCCTCCATGGAGTCTGTCCGTGGAGTAAATGTTCCCATGTACACCACCCTCAGGAGGACTACTGTGGTATTTACAATGGTTATGGAGTATATTTTGGCTGGCCAAAGATATACATCTCCTATTGTTCGAAGTGTTGGACTGATCGTTCTTGGTGCATTCATTGCCGGAGCTCGGGATTTGTCATTTGATGCCTATGGCTATGCTGTTGTTTTCTTATCTAACATCACAACAGCAGTATATCTTGCAACCATAGCCCGTATTGGGAAATCCAGTGGCCTTAATAGCTTTGGCCTTATGTGGTGTAATGGAGTCATATGTGGGCCGGCTTTGCTGTTTTTGACTTTTATTCGTGGTGACTTGAAGACGACAATCGATTTTCCTTATCTGTTTTCACCTGGTTTTATGGCTGTCTTGCTTTGTTCCTGTATACTGGCATTCTTCTTGAATTACAGCATATTCCTGAACACAACTCTAAATTCAGCGCTCACACAGACAATTTGCGGCAACTTGAAGGATTTTTTTACCATTGGACTTGGCTGGATGCTATTCGGTGGCCTTCCATTTGATATTTTGAATGTTATTGGGCAATTTCTGGGTTTCCTTGGCTCTGGATTGTATGCCTACTTTAAGCTCATAGGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

355

Amino Acids

38.84

Weight (kDa)

9.27

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32272 AT4G32272
fragaria_vesca FvH4_2g28960
malus_domestica MD08G1154400.v1.1 MD15G1125800.v1.1
prunus_persica Prupe.1G481800_v2.0.a1
pyrus_communis pycom08g12760 pycom15g11370
rosa_chinensis RchiOBHm_Chr6g0297811
rosa_laevigata RLG00000011560
rosa_multiflora Rmu_sc0003137.1_g000002
rosa_roxburghii Rroxscaffold_7G00170180 Rroxscaffold_7G00179030
rosa_rugosa Rorug06G0275600
rosa_samantha Rh6AG386300
rosa_wichuraiana Rw6G033670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
Acc16I TGCGCA 1 cut(s) 172
AccI GTMKAC 1 cut(s) 847
AciI CCGC 2 cut(s) 123, 921
AclWI GGATC 2 cut(s) 114, 127
AcoI YGGCCR 1 cut(s) 520
AcsI RAATTY 3 cut(s) 31, 218, 895
AcuI CTGAAG 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 3 cut(s) 360, 413, 461
AfeI AGCGCT 1 cut(s) 903
AfiI CCNNNNNNNGG 6 cut(s) 288, 395, 471, 474, 591, 681
AgsI TTSAA 6 cut(s) 193, 376, 781, 865, 931, 994
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 2 cut(s) 66, 814
AloI GAACNNNNNNTCC 4 cut(s) 435, 467, 549, 581
AluBI AGCT 5 cut(s) 109, 203, 590, 705, 1051
AluI AGCT 5 cut(s) 109, 203, 590, 705, 1051
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 5 cut(s) 9, 57, 73, 84, 280
AlwI GGATC 2 cut(s) 114, 127
Ama87I CYCGRG 1 cut(s) 591
Aor51HI AGCGCT 1 cut(s) 903
AoxI GGCC 6 cut(s) 165, 520, 694, 709, 740, 973
ApeKI GCWGC 2 cut(s) 149, 200
ApoI RAATTY 3 cut(s) 31, 218, 895
Asp700I GAANNNNTTC 1 cut(s) 110
AspLEI GCGC 2 cut(s) 173, 904
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 5 cut(s) 196, 301, 329, 785, 804
AsuII TTCGAA 1 cut(s) 547
AsuNHI GCTAGC 1 cut(s) 418
AvaI CYCGRG 1 cut(s) 591
AxyI CCTNAGG 1 cut(s) 470
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BalI TGGCCA 1 cut(s) 522
BamHI GGATCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 788
Bbv12I GWGCWC 1 cut(s) 592
BbvI GCAGC 2 cut(s) 136, 212
BciT130I CCWGG 2 cut(s) 68, 816
BcoDI GTCTC 5 cut(s) 9, 57, 73, 84, 280
BfaI CTAG 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 905
BisI GCNGC 3 cut(s) 150, 201, 922
BlsI GCNGC 3 cut(s) 151, 202, 923
Bme1390I CCNGG 2 cut(s) 68, 816
BmeT110I CYCGRG 1 cut(s) 591
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 3 cut(s) 121, 142, 400
BmrFI CCNGG 2 cut(s) 68, 816
BmsI GCATC 2 cut(s) 598, 951
BmtI GCTAGC 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 788
BplI GAGNNNNNCTC 2 cut(s) 66, 98
BpmI CTGGAG 1 cut(s) 89
Bpu14I TTCGAA 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 304
Bsa29I ATCGAT 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 14
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 426, 439, 1021
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 6 cut(s) 288, 395, 471, 474, 591, 681
Bse118I RCCGGY 1 cut(s) 742
Bse1I ACTGG 3 cut(s) 44, 690, 855
Bse21I CCTNAGG 1 cut(s) 470
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 532
BseBI CCWGG 2 cut(s) 68, 816
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 3 cut(s) 426, 439, 1021
BseGI GGATG 1 cut(s) 966
BseJI GATNNNNATC 1 cut(s) 532
BseLI CCNNNNNNNGG 6 cut(s) 288, 395, 471, 474, 591, 681
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 484
BseNI ACTGG 3 cut(s) 44, 690, 855
BseXI GCAGC 2 cut(s) 136, 212
BshFI GGCC 6 cut(s) 167, 522, 696, 711, 742, 975
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 591
BsiSI CCGG 3 cut(s) 396, 585, 743
BslI CCNNNNNNNGG 6 cut(s) 288, 395, 471, 474, 591, 681
BsmAI GTCTC 5 cut(s) 9, 57, 73, 84, 280
BsmBI CGTCTC 2 cut(s) 84, 280
BsmI GAATGC 2 cut(s) 575, 854
BsnI GGCC 6 cut(s) 167, 522, 696, 711, 742, 975
Bso31I GGTCTC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 547
Bsp1286I GDGCHC 1 cut(s) 592
Bsp1407I TGTACA 2 cut(s) 411, 459
Bsp143I GATC 2 cut(s) 119, 561
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 2 cut(s) 123, 921
BspANI GGCC 6 cut(s) 167, 522, 696, 711, 742, 975
BspCNI CTCAG 1 cut(s) 483
BspDI ATCGAT 1 cut(s) 792
BspLI GGNNCC 3 cut(s) 121, 142, 400
BspOI GCTAGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 114, 127
BspT104I TTCGAA 1 cut(s) 547
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 1 cut(s) 742
BsrGI TGTACA 2 cut(s) 411, 459
BsrI ACTGG 3 cut(s) 44, 690, 855
BssAI RCCGGY 1 cut(s) 742
BssECI CCNNGG 3 cut(s) 426, 439, 1021
BssMI GATC 2 cut(s) 119, 561
BssNAI GTATAC 1 cut(s) 848
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 426, 1021
Bst1107I GTATAC 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 68, 816
Bst4CI ACNGT 4 cut(s) 291, 313, 363, 484
Bst6I CTCTTC 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 14
BstAPI GCANNNNNTGC 1 cut(s) 581
BstAUI TGTACA 2 cut(s) 411, 459
BstBI TTCGAA 1 cut(s) 547
BstC8I GCNNGC 4 cut(s) 169, 420, 520, 744
BstDEI CTNAG 1 cut(s) 470
BstDSI CCRYGG 2 cut(s) 426, 439
BstF5I GGATG 1 cut(s) 966
BstH2I RGCGCY 1 cut(s) 905
BstHHI GCGC 2 cut(s) 173, 904
BstKTI GATC 2 cut(s) 122, 564
BstMAI GTCTC 5 cut(s) 9, 57, 73, 84, 280
BstMBI GATC 2 cut(s) 119, 561
BstMWI GCNNNNNNNGC 6 cut(s) 149, 415, 581, 671, 702, 748
BstNI CCWGG 2 cut(s) 68, 816
BstNSI RCATGY 1 cut(s) 418
BstSCI CCNGG 2 cut(s) 66, 814
BstV1I GCAGC 2 cut(s) 136, 212
BstV2I GAAGAC 1 cut(s) 788
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BstZ17I GTATAC 1 cut(s) 848
Bsu15I ATCGAT 1 cut(s) 792
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 6 cut(s) 167, 522, 696, 711, 742, 975
BsuTUI ATCGAT 1 cut(s) 792
BtgI CCRYGG 2 cut(s) 426, 439
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 966
BtsI GCAGTG 1 cut(s) 180
BtsIMutI CAGTG 2 cut(s) 180, 697
Cac8I GCNNGC 4 cut(s) 169, 420, 520, 744
CfoI GCGC 2 cut(s) 173, 904
Cfr10I RCCGGY 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 740
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 1 cut(s) 3
CsiI ACCWGGT 1 cut(s) 814
Csp6I GTAC 3 cut(s) 359, 412, 460
CviAII CATG 6 cut(s) 127, 163, 264, 415, 427, 457
CviQI GTAC 3 cut(s) 359, 412, 460
DdeI CTNAG 1 cut(s) 470
DpnI GATC 2 cut(s) 121, 563
DpnII GATC 2 cut(s) 119, 561
EaeI YGGCCR 1 cut(s) 520
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 590
Eco130I CCWWGG 2 cut(s) 426, 1021
Eco24I GRGCYC 1 cut(s) 592
Eco31I GGTCTC 1 cut(s) 57
Eco47III AGCGCT 1 cut(s) 903
Eco53kI GAGCTC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 591
EcoICRI GAGCTC 1 cut(s) 590
EcoRII CCWGG 2 cut(s) 66, 814
EcoT14I CCWWGG 2 cut(s) 426, 1021
EcoT38I GRGCYC 1 cut(s) 592
ErhI CCWWGG 2 cut(s) 426, 1021
Esp3I CGTCTC 2 cut(s) 84, 280
FaeI CATG 6 cut(s) 130, 166, 267, 418, 430, 460
FatI CATG 6 cut(s) 126, 162, 263, 414, 426, 456
FauNDI CATATG 1 cut(s) 734
FblI GTMKAC 1 cut(s) 847
Fnu4HI GCNGC 3 cut(s) 150, 201, 922
FokI GGATG 1 cut(s) 973
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 3 cut(s) 150, 201, 922
FspBI CTAG 1 cut(s) 419
FspI TGCGCA 1 cut(s) 172
GlaI GCGC 2 cut(s) 172, 903
GluI GCNGC 3 cut(s) 150, 201, 922
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 905
HaeIII GGCC 6 cut(s) 167, 522, 696, 711, 742, 975
HapII CCGG 3 cut(s) 396, 585, 743
HgaI GACGC 1 cut(s) 3
HhaI GCGC 2 cut(s) 173, 904
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 6 cut(s) 130, 166, 267, 418, 430, 460
Hin6I GCGC 2 cut(s) 171, 902
HinP1I GCGC 2 cut(s) 171, 902
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 53, 81, 320, 431, 729
HpaII CCGG 3 cut(s) 396, 585, 743
HphI GGTGA 5 cut(s) 196, 301, 329, 785, 804
Hpy166II GTNNAC 2 cut(s) 462, 848
Hpy188I TCNGA 7 cut(s) 9, 52, 89, 116, 225, 252, 337
Hpy188III TCNNGA 5 cut(s) 472, 593, 862, 880, 1029
Hpy8I GTNNAC 2 cut(s) 462, 848
Hpy99I CGWCG 2 cut(s) 19, 89
HpyAV CCTTC 4 cut(s) 4, 395, 925, 986
HpyCH4III ACNGT 4 cut(s) 291, 313, 363, 484
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 152, 230, 575, 665
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 415, 581, 671, 702, 748
HpyF3I CTNAG 1 cut(s) 470
HpySE526I ACGT 1 cut(s) 136
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 6 cut(s) 130, 166, 267, 418, 430, 460
HspAI GCGC 2 cut(s) 171, 902
KroI GCCGGC 1 cut(s) 742
KroNI GCCGGC 1 cut(s) 744
Kzo9I GATC 2 cut(s) 119, 561
LmnI GCTCC 3 cut(s) 140, 398, 587
Lsp1109I GCAGC 2 cut(s) 136, 212
LweI GCATC 2 cut(s) 598, 951
MabI ACCWGGT 1 cut(s) 814
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 1 cut(s) 773
MalI GATC 2 cut(s) 121, 563
MboI GATC 2 cut(s) 119, 561
MboII GAAGA 5 cut(s) 201, 307, 388, 793, 850
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 522
MluCI AATT 6 cut(s) 31, 218, 865, 895, 915, 1007
MluNI TGGCCA 1 cut(s) 522
MlyI GAGTC 3 cut(s) 75, 440, 738
MmeI TCCRAC 2 cut(s) 67, 535
MnlI CCTC 5 cut(s) 110, 399, 433, 468, 479
Mox20I TGGCCA 1 cut(s) 522
MroNI GCCGGC 1 cut(s) 742
MroXI GAANNNNTTC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 522
MseI TTAA 3 cut(s) 365, 699, 1047
Msp20I TGGCCA 1 cut(s) 522
MspI CCGG 3 cut(s) 396, 585, 743
MspR9I CCNGG 2 cut(s) 68, 816
Mva1269I GAATGC 2 cut(s) 575, 854
MvaI CCWGG 2 cut(s) 68, 816
MwoI GCNNNNNNNGC 6 cut(s) 149, 415, 581, 671, 702, 748
NaeI GCCGGC 1 cut(s) 744
NcoI CCATGG 1 cut(s) 426
NdeI CATATG 1 cut(s) 734
NdeII GATC 2 cut(s) 119, 561
NgoMIV GCCGGC 1 cut(s) 742
NheI GCTAGC 1 cut(s) 418
NlaIII CATG 6 cut(s) 130, 166, 267, 418, 430, 460
NlaIV GGNNCC 3 cut(s) 121, 142, 400
NmuCI GTSAC 1 cut(s) 773
NsbI TGCGCA 1 cut(s) 172
NspI RCATGY 1 cut(s) 418
NspV TTCGAA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 2 cut(s) 575, 854
PdiI GCCGGC 1 cut(s) 744
PdmI GAANNNNTTC 1 cut(s) 110
PfeI GAWTC 2 cut(s) 53, 320
PkrI GCNGC 3 cut(s) 151, 202, 923
PleI GAGTC 3 cut(s) 75, 439, 737
PpsI GAGTC 3 cut(s) 75, 439, 737
PsiI TTATAA 1 cut(s) 216
Psp124BI GAGCTC 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 66, 814
PspGI CCWGG 2 cut(s) 66, 814
PspN4I GGNNCC 3 cut(s) 121, 142, 400
PspPI GGNCC 1 cut(s) 740
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 3 cut(s) 360, 413, 461
RsaNI GTAC 3 cut(s) 359, 412, 460
SacI GAGCTC 1 cut(s) 592
SaqAI TTAA 3 cut(s) 365, 699, 1047
SatI GCNGC 3 cut(s) 150, 201, 922
Sau3AI GATC 2 cut(s) 119, 561
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 3 cut(s) 75, 440, 738
ScrFI CCNGG 2 cut(s) 68, 816
SduI GDGCHC 1 cut(s) 592
SetI ASST 9 cut(s) 69, 111, 139, 205, 319, 592, 707, 817, 1053
SexAI ACCWGGT 1 cut(s) 814
SfaNI GCATC 2 cut(s) 598, 951
SfuI TTCGAA 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 6 cut(s) 31, 218, 865, 895, 915, 1007
SsiI CCGC 2 cut(s) 123, 921
SspMI CTAG 1 cut(s) 419
SstI GAGCTC 1 cut(s) 592
StyD4I CCNGG 2 cut(s) 66, 814
StyI CCWWGG 2 cut(s) 426, 1021
TaaI ACNGT 4 cut(s) 291, 313, 363, 484
TaiI ACGT 1 cut(s) 139
TaqI TCGA 3 cut(s) 17, 547, 792
TasI AATT 6 cut(s) 31, 218, 865, 895, 915, 1007
TatI WGTACW 2 cut(s) 411, 459
TauI GCSGC 1 cut(s) 924
TfiI GAWTC 2 cut(s) 53, 320
Tru1I TTAA 3 cut(s) 365, 699, 1047
Tru9I TTAA 3 cut(s) 365, 699, 1047
TscAI CASTG 2 cut(s) 180, 697
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 149, 200
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 2 cut(s) 252, 568
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 2 cut(s) 180, 697
XapI RAATTY 3 cut(s) 31, 218, 895
XceI RCATGY 1 cut(s) 418
XmiI GTMKAC 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.