AT4G32520

Interconversion of serine and glycine

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
15689436 .. 15692989
3554 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32520.1

Sequence Viewer

Length: 1590 bp
ATGCAAGCTTGTTGTGGTGGTAATTCGATGGCTTCTCTTCAGCAACCTGGACGGGTTCAAGGATCTGTCTTTCCCCCAATTATGCCTCCAGTGACCAAATTTTCTCAGCAGTTGAAGTTCAATATTTCAAAACCTTTCCGTTCTTCATTTCTGAAAAGAAACCTGGTCTCTGAAATGAGAGCATCTTCAGTCTCGCTACCTAATGTCGAGATAAGCAGCAAAGAAATCCCTTTTGAGGACTATGGTCTTGGTGAAGTTGATCCAGAGGTCCGAACCATCATCACAAAGGAGAAAGATAGACAATTCAGGAGCTTGGAGCTTATTGCATCTGAGAATTTCACGTCTCGAGCAGTTATGGAGGCGGTTGGCTCATGCCTTACCAACAAGTATTCTGAGGGACTGCCTGGTAAAAGATATTATGGTGGCAATGAGTACATTGATCAGTTGGAGACGCTTTGCCAGAACCGGGCTTTGGCAGCCTTCCGCTTAGATTCTACGAAATGGGGGGTTAATGTTCAGCCGTTATCTGGTTCACCTGCAAACTTTGCTGTCTACACTGCGATACTTAGCCCTCATGATCGGATCATGGGTTTGGATTTACCTCACGGTGGTCATCTGTCGCATGGGTTCATGACCGCTAAAAGGCGTGTATCTGGAACTTCAATATACTTTGAGTCCATGCCTTATCGACTTGATGAATCAACAGGCATTGTTGACTACGATATGCTCGAGAAAACTGCTACACTTTTCAGACCAAAGCTTATTATCGCAGGAGCTAGTGCATACAGCCGAGATTTTGACTATCCTCGCATGAGGAAGATCGCAGACTCAGTTGGTGCTTTTCTGATGATGGATATGGCTCATATCAGTGGGCTTGTGGCTGCTTCTGTGGTAGCTGACCCTTTTGAGTATTGTGATATTGTTACAACAACAACTCACAAGTCTTTGAGAGGTCCGAGAGGTGGCATGATCTTCTTCAGGAAGGATCCAATTAATGGGGTTGATCTTGAATCTGCCGTGAACAATGCTGTCTTCCCTGGTTTGCAGGGTGGCCCTCATAACCACACAATTGGAGGATTAGCAGTCTGCTTGAAACACGCACAATCACCGGAATTCAAGGCGTACCAGAAAAGAGTTGTGTCTAACTGTAGAGCTCTAGCTAACCGATTGGTTGAACTCGGGTTTAAGCTAGTTTCTGGTGGCAGCGATAACCACTTGGTTCTCGTCGATCTTAGACCCATGGGTATGGATGGTGCGCGGGTTGAGAAAATCTTAGACATGGCATCTATTACTCTCAACAAGAACTCTGTCCCTGGGGACAAAAGTGCGTTGGTACCAGGGGGAATAAGGATAGGATCCCCCGCGATGACGACAAGAGGACTGTCAGAGAAAGACTTTGTAGTAGTGGCTGACTTCATCAAGGAAGGTGTGGAGATAACAATGGAAGCCAAGAAAGCCGCGCCGGGTTCAAAGCTTCAAGATTTCAACAAGTTCGTGACATCTCCTGAGTTTCCATTGAAAGAGAGAGTGAAGAGTCTAAAGGAGAGAGTGGAAACCTTCACATCTCGTTTTCCCATTCCTGGCGTTTAA

Protein Analysis

529

Amino Acids

57.98

Weight (kDa)

9.03

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 85 - 473 3.6e-193 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 544
Acc65I GGTACC 1 cut(s) 1333
AccB1I GGYRCC 1 cut(s) 1333
AccB7I CCANNNNNTGG 1 cut(s) 995
AccI GTMKAC 1 cut(s) 552
AccII CGCG 3 cut(s) 1258, 1364, 1460
AciI CCGC 6 cut(s) 362, 484, 636, 1258, 1362, 1458
AclWI GGATC 7 cut(s) 70, 254, 590, 980, 993, 1350, 1363
AcsI RAATTY 3 cut(s) 98, 334, 1112
AcuI CTGAAG 3 cut(s) 23, 171, 961
AfaI GTAC 3 cut(s) 434, 1124, 1335
AfiI CCNNNNNNNGG 9 cut(s) 235, 466, 472, 527, 608, 642, 962, 995, 1580
AjiI CACGTC 1 cut(s) 342
AjnI CCWGG 7 cut(s) 46, 162, 403, 1036, 1312, 1336, 1579
AjuI GAANNNNNNNTTGG 2 cut(s) 455, 487
Alw21I GWGCWC 1 cut(s) 1156
Alw26I GTCTC 4 cut(s) 172, 196, 348, 443
AlwI GGATC 7 cut(s) 70, 254, 590, 980, 993, 1350, 1363
Ama87I CYCGRG 3 cut(s) 345, 728, 1178
AoxI GGCC 1 cut(s) 1051
ApeKI GCWGC 4 cut(s) 216, 476, 881, 1203
ApoI RAATTY 3 cut(s) 98, 334, 1112
AseI ATTAAT 1 cut(s) 993
Asp718I GGTACC 1 cut(s) 1333
AspLEI GCGC 2 cut(s) 1258, 1462
AspS9I GGNCC 3 cut(s) 268, 953, 1052
AsuC2I CCSGG 2 cut(s) 467, 1464
AsuHPI GGTGA 3 cut(s) 263, 525, 1098
AvaI CYCGRG 3 cut(s) 345, 728, 1178
AvaII GGWCC 2 cut(s) 268, 953
BamHI GGATCC 2 cut(s) 985, 1355
BanI GGYRCC 1 cut(s) 1333
BanII GRGCYC 1 cut(s) 1156
BbsI GAAGAC 1 cut(s) 1024
Bbv12I GWGCWC 1 cut(s) 1156
BbvI GCAGC 4 cut(s) 228, 488, 868, 1215
BccI CCATC 4 cut(s) 22, 284, 844, 1244
BceAI ACGGC 2 cut(s) 505, 1001
BcgI CGANNNNNNTGC 2 cut(s) 719, 753
BciT130I CCWGG 7 cut(s) 48, 164, 405, 1038, 1314, 1338, 1581
BclI TGATCA 1 cut(s) 439
BcnI CCSGG 2 cut(s) 467, 1464
BcoDI GTCTC 4 cut(s) 172, 196, 348, 443
BfaI CTAG 3 cut(s) 777, 1157, 1190
BfmI CTRYAG 1 cut(s) 1147
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 5 cut(s) 217, 477, 882, 1204, 1458
BlsI GCNGC 5 cut(s) 218, 478, 883, 1205, 1459
Bme1390I CCNGG 9 cut(s) 48, 164, 405, 467, 1038, 1314, 1338, 1464, 1581
Bme18I GGWCC 2 cut(s) 268, 953
BmeT110I CYCGRG 3 cut(s) 345, 728, 1178
BmgBI CACGTC 1 cut(s) 342
BmgT120I GGNCC 3 cut(s) 268, 953, 1052
BmiI GGNNCC 3 cut(s) 987, 1335, 1357
BmrFI CCNGG 9 cut(s) 48, 164, 405, 467, 1038, 1314, 1338, 1464, 1581
BmsI GCATC 3 cut(s) 191, 335, 1292
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 1024
BpmI CTGGAG 1 cut(s) 72
BpuMI CCSGG 2 cut(s) 467, 1464
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 5 cut(s) 1036, 1239, 1312, 1313, 1337
BsaWI WCCGGW 1 cut(s) 1108
Bsc4I CCNNNNNNNGG 9 cut(s) 235, 466, 472, 527, 608, 642, 962, 995, 1580
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 433
BseBI CCWGG 7 cut(s) 48, 164, 405, 1038, 1314, 1338, 1581
BseDI CCNNGG 5 cut(s) 1036, 1239, 1312, 1313, 1337
BseGI GGATG 1 cut(s) 1255
BseLI CCNNNNNNNGG 9 cut(s) 235, 466, 472, 527, 608, 642, 962, 995, 1580
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 5 cut(s) 119, 321, 384, 843, 1497
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 4 cut(s) 228, 488, 868, 1215
Bsh1236I CGCG 3 cut(s) 1258, 1364, 1460
BshFI GGCC 1 cut(s) 1053
BshNI GGYRCC 1 cut(s) 1333
BsiHKAI GWGCWC 1 cut(s) 1156
BsiHKCI CYCGRG 3 cut(s) 345, 728, 1178
BsiSI CCGG 3 cut(s) 466, 1109, 1463
BslFI GGGAC 3 cut(s) 411, 1295, 1331
BslI CCNNNNNNNGG 9 cut(s) 235, 466, 472, 527, 608, 642, 962, 995, 1580
BsmAI GTCTC 4 cut(s) 172, 196, 348, 443
BsmBI CGTCTC 2 cut(s) 348, 443
BsmFI GGGAC 3 cut(s) 411, 1295, 1331
BsnI GGCC 1 cut(s) 1053
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 3 cut(s) 345, 728, 1178
Bsp1286I GDGCHC 1 cut(s) 1156
Bsp19I CCATGG 1 cut(s) 1239
BspACI CCGC 6 cut(s) 362, 484, 636, 1258, 1362, 1458
BspANI GGCC 1 cut(s) 1053
BspCNI CTCAG 5 cut(s) 118, 322, 385, 842, 1498
BspFNI CGCG 3 cut(s) 1258, 1364, 1460
BspHI TCATGA 2 cut(s) 574, 630
BspLI GGNNCC 3 cut(s) 987, 1335, 1357
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 7 cut(s) 70, 254, 590, 980, 993, 1350, 1363
BspT107I GGYRCC 1 cut(s) 1333
BspTNI GGTCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 5 cut(s) 1036, 1239, 1312, 1313, 1337
BssT1I CCWWGG 1 cut(s) 1239
Bst2UI CCWGG 7 cut(s) 48, 164, 405, 1038, 1314, 1338, 1581
Bst4CI ACNGT 3 cut(s) 608, 1148, 1383
Bst6I CTCTTC 2 cut(s) 42, 1526
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 9 cut(s) 105, 330, 393, 487, 566, 829, 1232, 1273, 1506
BstDSI CCRYGG 1 cut(s) 1239
BstF5I GGATG 1 cut(s) 1255
BstFNI CGCG 3 cut(s) 1258, 1364, 1460
BstHHI GCGC 2 cut(s) 1258, 1462
BstMAI GTCTC 4 cut(s) 172, 196, 348, 443
BstMWI GCNNNNNNNGC 3 cut(s) 476, 545, 1454
BstNI CCWGG 7 cut(s) 48, 164, 405, 1038, 1314, 1338, 1581
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 9 cut(s) 46, 162, 403, 465, 1036, 1312, 1336, 1462, 1579
BstSFI CTRYAG 1 cut(s) 1147
BstUI CGCG 3 cut(s) 1258, 1364, 1460
BstV1I GCAGC 4 cut(s) 228, 488, 868, 1215
BstV2I GAAGAC 1 cut(s) 1024
BstX2I RGATCY 3 cut(s) 62, 985, 1355
BstXI CCANNNNNNTGG 2 cut(s) 1070, 1246
BstYI RGATCY 3 cut(s) 62, 985, 1355
BsuRI GGCC 1 cut(s) 1053
BtgI CCRYGG 1 cut(s) 1239
BtgZI GCGATG 1 cut(s) 1379
BtrI CACGTC 1 cut(s) 342
BtsCI GGATG 1 cut(s) 1255
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 3 cut(s) 96, 555, 874
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 1 cut(s) 6
CciI TCATGA 2 cut(s) 574, 630
CfoI GCGC 2 cut(s) 1258, 1462
Cfr13I GGNCC 3 cut(s) 268, 953, 1052
CseI GACGC 1 cut(s) 460
CsiI ACCWGGT 1 cut(s) 162
Csp6I GTAC 3 cut(s) 433, 1123, 1334
CviQI GTAC 3 cut(s) 433, 1123, 1334
DdeI CTNAG 9 cut(s) 105, 330, 393, 487, 566, 829, 1232, 1273, 1506
Eam1104I CTCTTC 2 cut(s) 42, 1526
EarI CTCTTC 2 cut(s) 42, 1526
Ecl136II GAGCTC 1 cut(s) 1154
Eco130I CCWWGG 1 cut(s) 1239
Eco24I GRGCYC 1 cut(s) 1156
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 268, 953
Eco53kI GAGCTC 1 cut(s) 1154
Eco57I CTGAAG 3 cut(s) 23, 171, 961
Eco88I CYCGRG 3 cut(s) 345, 728, 1178
EcoICRI GAGCTC 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 1112
EcoRII CCWGG 7 cut(s) 46, 162, 403, 1036, 1312, 1336, 1579
EcoT14I CCWWGG 1 cut(s) 1239
EcoT38I GRGCYC 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 1239
Esp3I CGTCTC 2 cut(s) 348, 443
FaqI GGGAC 3 cut(s) 411, 1295, 1331
FauI CCCGC 2 cut(s) 1251, 1369
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 217, 477, 882, 1204, 1458
FokI GGATG 1 cut(s) 1262
FriOI GRGCYC 1 cut(s) 1156
Fsp4HI GCNGC 5 cut(s) 217, 477, 882, 1204, 1458
FspBI CTAG 3 cut(s) 777, 1157, 1190
GlaI GCGC 2 cut(s) 1257, 1461
GluI GCNGC 5 cut(s) 217, 477, 882, 1204, 1458
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 1053
HapII CCGG 3 cut(s) 466, 1109, 1463
HgaI GACGC 1 cut(s) 460
HhaI GCGC 2 cut(s) 1258, 1462
Hin6I GCGC 2 cut(s) 1256, 1460
HinP1I GCGC 2 cut(s) 1256, 1460
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HindIII AAGCTT 3 cut(s) 6, 758, 1472
HinfI GANTC 6 cut(s) 491, 674, 698, 827, 1010, 1534
HpaII CCGG 3 cut(s) 466, 1109, 1463
HphI GGTGA 3 cut(s) 263, 525, 1098
Hpy166II GTNNAC 4 cut(s) 533, 553, 715, 1021
Hpy8I GTNNAC 4 cut(s) 533, 553, 715, 1021
Hpy99I CGWCG 1 cut(s) 1229
HpyAV CCTTC 4 cut(s) 490, 976, 1418, 1567
HpyCH4III ACNGT 3 cut(s) 608, 1148, 1383
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 5 cut(s) 4, 326, 539, 782, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 476, 545, 1454
HpyF3I CTNAG 9 cut(s) 105, 330, 393, 487, 566, 829, 1232, 1273, 1506
HpySE526I ACGT 1 cut(s) 341
HspAI GCGC 2 cut(s) 1256, 1460
KpnI GGTACC 1 cut(s) 1337
Ksp22I TGATCA 1 cut(s) 439
LmnI GCTCC 3 cut(s) 309, 316, 773
Lsp1109I GCAGC 4 cut(s) 228, 488, 868, 1215
LweI GCATC 3 cut(s) 191, 335, 1292
MabI ACCWGGT 1 cut(s) 162
MaeI CTAG 3 cut(s) 777, 1157, 1190
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 3 cut(s) 91, 922, 1495
MboII GAAGA 8 cut(s) 29, 135, 177, 829, 964, 967, 1024, 1543
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 3 cut(s) 62, 985, 1355
MhlI GDGCHC 1 cut(s) 1156
MluCI AATT 8 cut(s) 22, 78, 98, 302, 334, 990, 1068, 1112
MlyI GAGTC 3 cut(s) 683, 821, 1543
MmeI TCCRAC 1 cut(s) 426
MseI TTAA 4 cut(s) 510, 993, 1185, 1588
MslI CAYNNNNRTG 2 cut(s) 867, 1244
MspI CCGG 3 cut(s) 466, 1109, 1463
MspR9I CCNGG 9 cut(s) 48, 164, 405, 467, 1038, 1314, 1338, 1464, 1581
MunI CAATTG 1 cut(s) 1068
MvaI CCWGG 7 cut(s) 48, 164, 405, 1038, 1314, 1338, 1581
MvnI CGCG 3 cut(s) 1258, 1364, 1460
MwoI GCNNNNNNNGC 3 cut(s) 476, 545, 1454
NciI CCSGG 2 cut(s) 467, 1464
NcoI CCATGG 1 cut(s) 1239
NlaIV GGNNCC 3 cut(s) 987, 1335, 1357
NmeAIII GCCGAG 1 cut(s) 815
NmuCI GTSAC 2 cut(s) 91, 1495
PaeR7I CTCGAG 2 cut(s) 345, 728
PagI TCATGA 2 cut(s) 574, 630
PaqCI CACCTGC 1 cut(s) 544
PasI CCCWGGG 1 cut(s) 1313
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 3 cut(s) 491, 698, 1010
PflMI CCANNNNNTGG 1 cut(s) 995
PkrI GCNGC 5 cut(s) 218, 478, 883, 1205, 1459
PleI GAGTC 3 cut(s) 682, 821, 1542
PpsI GAGTC 3 cut(s) 682, 821, 1542
PshAI GACNNNNGTC 1 cut(s) 243
PshBI ATTAAT 1 cut(s) 993
Psp124BI GAGCTC 1 cut(s) 1156
Psp6I CCWGG 7 cut(s) 46, 162, 403, 1036, 1312, 1336, 1579
PspGI CCWGG 7 cut(s) 46, 162, 403, 1036, 1312, 1336, 1579
PspN4I GGNNCC 3 cut(s) 987, 1335, 1357
PspPI GGNCC 3 cut(s) 268, 953, 1052
PsuI RGATCY 3 cut(s) 62, 985, 1355
RsaI GTAC 3 cut(s) 434, 1124, 1335
RsaNI GTAC 3 cut(s) 433, 1123, 1334
RseI CAYNNNNRTG 2 cut(s) 867, 1244
SacI GAGCTC 1 cut(s) 1156
SaqAI TTAA 4 cut(s) 510, 993, 1185, 1588
SatI GCNGC 5 cut(s) 217, 477, 882, 1204, 1458
Sau96I GGNCC 3 cut(s) 268, 953, 1052
SchI GAGTC 3 cut(s) 683, 821, 1543
ScrFI CCNGG 9 cut(s) 48, 164, 405, 467, 1038, 1314, 1338, 1464, 1581
SduI GDGCHC 1 cut(s) 1156
SexAI ACCWGGT 1 cut(s) 162
SfaNI GCATC 3 cut(s) 191, 335, 1292
SfcI CTRYAG 1 cut(s) 1147
Sfr274I CTCGAG 2 cut(s) 345, 728
SinI GGWCC 2 cut(s) 268, 953
SlaI CTCGAG 2 cut(s) 345, 728
SmiMI CAYNNNNRTG 2 cut(s) 867, 1244
SmlI CTYRAG 2 cut(s) 345, 728
SmoI CTYRAG 2 cut(s) 345, 728
Sse9I AATT 8 cut(s) 22, 78, 98, 302, 334, 990, 1068, 1112
SsiI CCGC 6 cut(s) 362, 484, 636, 1258, 1362, 1458
SspI AATATT 1 cut(s) 124
SspMI CTAG 3 cut(s) 777, 1157, 1190
SstI GAGCTC 1 cut(s) 1156
StyD4I CCNGG 9 cut(s) 46, 162, 403, 465, 1036, 1312, 1336, 1462, 1579
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 3 cut(s) 608, 1148, 1383
TaiI ACGT 1 cut(s) 344
TaqI TCGA 6 cut(s) 26, 207, 346, 688, 729, 1227
TasI AATT 8 cut(s) 22, 78, 98, 302, 334, 990, 1068, 1112
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 1460
TfiI GAWTC 3 cut(s) 491, 698, 1010
Tru1I TTAA 4 cut(s) 510, 993, 1185, 1588
Tru9I TTAA 4 cut(s) 510, 993, 1185, 1588
TscAI CASTG 3 cut(s) 96, 562, 874
TseFI GTSAC 2 cut(s) 91, 1495
TseI GCWGC 4 cut(s) 216, 476, 881, 1203
Tsp45I GTSAC 2 cut(s) 91, 1495
TspDTI ATGAA 4 cut(s) 135, 619, 711, 1405
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 3 cut(s) 96, 562, 874
Van91I CCANNNNNTGG 1 cut(s) 995
VpaK11BI GGWCC 2 cut(s) 268, 953
VspI ATTAAT 1 cut(s) 993
XapI RAATTY 3 cut(s) 98, 334, 1112
XhoI CTCGAG 2 cut(s) 345, 728
XmiI GTMKAC 1 cut(s) 552
XspI CTAG 3 cut(s) 777, 1157, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.