Prupe.8G013000_v2.0.a1

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
1072790 .. 1077489
4700 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G013000.5

Sequence Viewer

Length: 1593 bp
ATGCAGGCTTGTGGTGGAGCTGCAGTGATGGGTTCTATTCAACAGCCCACTTGGACCAAAGGAACAACTTTTCCAAACAAGGGGCTTAGCTTTGGTGGATATTCACATCAATTAAAACTCAATTACGTGAAGACCCGTAGATCTTATTCTTACATTGAAGGAAGCTTGGTTGCTGGAAGGCCATCCTCTTCTGTCTCTGTGCCTTTGCCCGAAATTGGAGCCGATGGAAGCAGTTTTATAGATAATGGGTTAAGTGAGGCTGACCCTGAGGTGCGTGGTATTATTGAAAAGGAGAAGGAGCGACAGTTCAAGAGCCTTGAGCTTATTGCCTCAGAAAATTTTACATATCGGGCAGTGATGGAGGCAGTTGGCTCATGTCTCACGAACAAGTATTCAGAAGGATTACCAGGTAAAAGGTACTATGGTGGTAATGAGCACATTGATGAGCTTGAAACACTATGCCAAAAAAGGGCACTTGATGCATTTCACTTAGATGGAAAGAAGTGGGGTGTGAATGTTCAACCATTATCTGGTTCTCCTGCAAATTTTGAGGTTTATACTGCAGTTCTTAAACCTCATGACCGTCTCATGGGTTTGGACTTGTCTCACGGGGGACATTTGTCTCATGGTTTCATGACTCCTAAAAGACGGGTATCAGGCACATCCATTTATTTTGAGTCCATGTCCTATCGACTAAATGAATCCACAGGTCTCGTTGATTATGACAAGCTTGAGGAAATGGCTGACCGGTTTAAACCAAAACTCATTATTGCCGGGGCTAGTGCTTATCCTCGTGATTTTGACTATCCTCGCATGAGGAAGATTGCAGATGCTGTTGGTGCTTTTCTTATGATGGATATGGCTCACATAAGTGGTCTTGTTGCTGCTTCTGTGCTTGCAAATCCTTTTGACTACTGCGATATTGTGACCACAACAACACACAAGTCTTTAAGAGGCCCAAGAGGTGGAATGATCTTCTTCAAGAAAGATGCAGTTCTTGGGGTTGATTTAGAATCTGCCATCAACAATGCTGTTTTTCCAGGTTTACAGGGTGGTCCTCATAACCACACTATTGGGGGCCTTGCAGTGTGCTTGAAGTATGCACAGTCCCCAGAATTTAAGGCTTACCAGAACAAGGTGGTCTCTAATTGTAGGTCTCTTGCAAGCCGATTGACTGAACTTGGATACAAACTAGTTTCTGGTGGAAGTGATAATCATCTGGTTCTTGTGGATTTGCGGCCTTTAGGGATTGATGGAGCTCGAGTGGAGAAAATTCTTGACATGGCTTCTATTACCCTCAACAAGAATTCAGTACCTGGTGATAAAAGTGCTGTAGTGCCCGGTGGCATTCGCATCGGATCACCTGCCATGACGACAAGGGGATTCACCGAGAAAGAATTCATAGCAGTTGCGGACTACATTCATGAGGGTGTGCAGATAACAATTGATGCTAAACGAGCAGTATCAGGATCAAAGCTTCAAGATTTTATGAGGTTTGTTGCTTCCCCTGAATTCTCTCTAAAGGATCGGGTGTCAGATCTGCAGAGAAGAGTTGAAGGGCTTACCACCCAGTTCCCAATACCTGGAGTATAA

Protein Analysis

531

Amino Acids

57.74

Weight (kDa)

8.51

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1372
Acc36I ACCTGC 1 cut(s) 1372
AccB7I CCANNNNNTGG 3 cut(s) 530, 965, 1583
AciI CCGC 2 cut(s) 1237, 1412
AclWI GGATC 3 cut(s) 1366, 1477, 1533
AcsI RAATTY 7 cut(s) 337, 544, 1115, 1272, 1306, 1397, 1511
AfaI GTAC 2 cut(s) 419, 1314
AfiI CCNNNNNNNGG 8 cut(s) 80, 215, 469, 530, 589, 965, 1135, 1583
AgeI ACCGGT 1 cut(s) 747
AhlI ACTAGT 1 cut(s) 1192
AjnI CCWGG 4 cut(s) 406, 1039, 1315, 1582
AleI CACNNNNGTG 1 cut(s) 870
AloI GAACNNNNNNTCC 4 cut(s) 55, 87, 290, 322
AluBI AGCT 8 cut(s) 20, 90, 165, 322, 448, 730, 1259, 1477
AluI AGCT 8 cut(s) 20, 90, 165, 322, 448, 730, 1259, 1477
Alw21I GWGCWC 2 cut(s) 438, 1261
Alw26I GTCTC 8 cut(s) 199, 383, 590, 609, 627, 716, 1147, 1161
AlwI GGATC 3 cut(s) 1366, 1477, 1533
AlwNI CAGNNNCTG 2 cut(s) 833, 1316
Ama87I CYCGRG 1 cut(s) 1260
AoxI GGCC 4 cut(s) 179, 955, 1078, 1238
ApeKI GCWGC 2 cut(s) 20, 884
ApoI RAATTY 7 cut(s) 337, 544, 1115, 1272, 1306, 1397, 1511
AsiGI ACCGGT 1 cut(s) 747
Asp700I GAANNNNTTC 1 cut(s) 1397
AspS9I GGNCC 4 cut(s) 54, 956, 1055, 1078
AsuC2I CCSGG 2 cut(s) 775, 1341
AsuHPI GGTGA 3 cut(s) 1331, 1353, 1378
AvaI CYCGRG 1 cut(s) 1260
AvaII GGWCC 2 cut(s) 54, 1055
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 2 cut(s) 475, 1341
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BanII GRGCYC 1 cut(s) 1261
BauI CACGAG 1 cut(s) 792
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 2 cut(s) 438, 1261
BbvI GCAGC 2 cut(s) 7, 871
BccI CCATC 8 cut(s) 22, 190, 218, 352, 488, 847, 1028, 1247
BcgI CGANNNNNNTGC 2 cut(s) 1336, 1370
BciT130I CCWGG 4 cut(s) 408, 1041, 1317, 1584
BciVI GTATCC 1 cut(s) 1178
BcnI CCSGG 2 cut(s) 775, 1341
BcoDI GTCTC 8 cut(s) 199, 383, 590, 609, 627, 716, 1147, 1161
BcuI ACTAGT 1 cut(s) 1192
BfaI CTAG 2 cut(s) 780, 1193
BfmI CTRYAG 4 cut(s) 21, 561, 1332, 1541
BfuAI ACCTGC 1 cut(s) 1372
BfuI GTATCC 1 cut(s) 1178
BglII AGATCT 2 cut(s) 140, 1537
BisI GCNGC 3 cut(s) 21, 885, 1238
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 3 cut(s) 22, 886, 1239
Bme1390I CCNGG 6 cut(s) 408, 775, 1041, 1317, 1341, 1584
Bme18I GGWCC 2 cut(s) 54, 1055
BmeT110I CYCGRG 1 cut(s) 1260
BmgT120I GGNCC 4 cut(s) 54, 956, 1055, 1078
BmiI GGNNCC 2 cut(s) 220, 1079
BmrFI CCNGG 6 cut(s) 408, 775, 1041, 1317, 1341, 1584
BmrI ACTGGG 1 cut(s) 1564
BmsI GCATC 5 cut(s) 469, 820, 979, 1362, 1438
BmuI ACTGGG 1 cut(s) 1564
BoxI GACNNNNGTC 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 338, 752
BpuMI CCSGG 2 cut(s) 775, 1341
BsaAI YACGTR 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 1215
BsaI GGTCTC 3 cut(s) 716, 1147, 1161
BsaJI CCNNGG 1 cut(s) 774
BsaWI WCCGGW 1 cut(s) 747
BsaXI ACNNNNNCTCC 6 cut(s) 9, 39, 290, 320, 1248, 1278
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 215, 469, 530, 589, 965, 1135, 1583
Bse118I RCCGGY 1 cut(s) 747
Bse1I ACTGG 1 cut(s) 1570
Bse21I CCTNAGG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 1215
BseBI CCWGG 4 cut(s) 408, 1041, 1317, 1584
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 2 cut(s) 182, 662
BseJI GATNNNNATC 1 cut(s) 1215
BseLI CCNNNNNNNGG 8 cut(s) 80, 215, 469, 530, 589, 965, 1135, 1583
BseMII CTCAG 2 cut(s) 258, 345
BseNI ACTGG 1 cut(s) 1570
BseSI GKGCMC 2 cut(s) 475, 1341
BseXI GCAGC 2 cut(s) 7, 871
BsgI GTGCAG 1 cut(s) 1454
BshFI GGCC 4 cut(s) 181, 957, 1080, 1240
BshTI ACCGGT 1 cut(s) 747
BsiHKAI GWGCWC 2 cut(s) 438, 1261
BsiHKCI CYCGRG 1 cut(s) 1260
BsiSI CCGG 3 cut(s) 748, 774, 1341
BslFI GGGAC 2 cut(s) 627, 1093
BslI CCNNNNNNNGG 8 cut(s) 80, 215, 469, 530, 589, 965, 1135, 1583
BsmAI GTCTC 8 cut(s) 199, 383, 590, 609, 627, 716, 1147, 1161
BsmBI CGTCTC 1 cut(s) 590
BsmFI GGGAC 2 cut(s) 627, 1093
BsmI GAATGC 1 cut(s) 1347
BsnI GGCC 4 cut(s) 181, 957, 1080, 1240
Bso31I GGTCTC 3 cut(s) 716, 1147, 1161
BsoBI CYCGRG 1 cut(s) 1260
Bsp1286I GDGCHC 4 cut(s) 438, 475, 1261, 1341
Bsp143I GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
Bsp1720I GCTNAGC 1 cut(s) 86
BspACI CCGC 2 cut(s) 1237, 1412
BspANI GGCC 4 cut(s) 181, 957, 1080, 1240
BspCNI CTCAG 2 cut(s) 259, 344
BspHI TCATGA 3 cut(s) 577, 633, 1423
BspLI GGNNCC 2 cut(s) 220, 1079
BspMAI CTGCAG 3 cut(s) 25, 565, 1545
BspMI ACCTGC 1 cut(s) 1372
BspPI GGATC 3 cut(s) 1366, 1477, 1533
BspTNI GGTCTC 3 cut(s) 716, 1147, 1161
BsrFI RCCGGY 1 cut(s) 747
BsrI ACTGG 1 cut(s) 1570
BssAI RCCGGY 1 cut(s) 747
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
BssSI CACGAG 1 cut(s) 792
Bst2BI CACGAG 1 cut(s) 792
Bst2UI CCWGG 4 cut(s) 408, 1041, 1317, 1584
Bst4CI ACNGT 3 cut(s) 306, 584, 1107
Bst6I CTCTTC 2 cut(s) 193, 1543
BstAPI GCANNNNNTGC 1 cut(s) 479
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 6, 897, 1165
BstDEI CTNAG 4 cut(s) 86, 267, 331, 490
BstF5I GGATG 2 cut(s) 182, 662
BstKTI GATC 6 cut(s) 143, 975, 1361, 1472, 1528, 1540
BstMAI GTCTC 8 cut(s) 199, 383, 590, 609, 627, 716, 1147, 1161
BstMBI GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
BstMWI GCNNNNNNNGC 3 cut(s) 479, 839, 1457
BstNI CCWGG 4 cut(s) 408, 1041, 1317, 1584
BstPAI GACNNNNGTC 1 cut(s) 619
BstSCI CCNGG 6 cut(s) 406, 773, 1039, 1315, 1339, 1582
BstSFI CTRYAG 4 cut(s) 21, 561, 1332, 1541
BstSLI GKGCMC 2 cut(s) 475, 1341
BstV1I GCAGC 2 cut(s) 7, 871
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 140, 1537
BstXI CCANNNNNNTGG 1 cut(s) 1073
BstYI RGATCY 2 cut(s) 140, 1537
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 1178
BsuRI GGCC 4 cut(s) 181, 957, 1080, 1240
BtsCI GGATG 2 cut(s) 182, 662
BtsI GCAGTG 3 cut(s) 30, 360, 1092
BtsIMutI CAGTG 3 cut(s) 30, 360, 1092
BveI ACCTGC 1 cut(s) 1372
Cac8I GCNNGC 3 cut(s) 6, 897, 1165
CaiI CAGNNNCTG 2 cut(s) 833, 1316
CciI TCATGA 3 cut(s) 577, 633, 1423
Cfr10I RCCGGY 1 cut(s) 747
Cfr13I GGNCC 4 cut(s) 54, 956, 1055, 1078
CsiI ACCWGGT 2 cut(s) 406, 1315
Csp6I GTAC 2 cut(s) 418, 1313
CspAI ACCGGT 1 cut(s) 747
CviQI GTAC 2 cut(s) 418, 1313
DdeI CTNAG 4 cut(s) 86, 267, 331, 490
DpnI GATC 6 cut(s) 142, 974, 1360, 1471, 1527, 1539
DpnII GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
DraI TTTAAA 1 cut(s) 754
Eam1104I CTCTTC 2 cut(s) 193, 1543
EarI CTCTTC 2 cut(s) 193, 1543
Ecl136II GAGCTC 1 cut(s) 1259
Eco24I GRGCYC 1 cut(s) 1261
Eco31I GGTCTC 3 cut(s) 716, 1147, 1161
Eco47I GGWCC 2 cut(s) 54, 1055
Eco53kI GAGCTC 1 cut(s) 1259
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 1260
EcoICRI GAGCTC 1 cut(s) 1259
EcoO109I RGGNCCY 1 cut(s) 1078
EcoRI GAATTC 3 cut(s) 1306, 1397, 1511
EcoRII CCWGG 4 cut(s) 406, 1039, 1315, 1582
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 1 cut(s) 1261
Esp3I CGTCTC 1 cut(s) 590
FaqI GGGAC 2 cut(s) 627, 1093
Fnu4HI GCNGC 3 cut(s) 21, 885, 1238
FokI GGATG 2 cut(s) 169, 649
FriOI GRGCYC 1 cut(s) 1261
Fsp4HI GCNGC 3 cut(s) 21, 885, 1238
FspBI CTAG 2 cut(s) 780, 1193
GluI GCNGC 3 cut(s) 21, 885, 1238
HaeIII GGCC 4 cut(s) 181, 957, 1080, 1240
HapII CCGG 3 cut(s) 748, 774, 1341
HindIII AAGCTT 3 cut(s) 163, 728, 1475
HinfI GANTC 5 cut(s) 637, 677, 701, 1013, 1383
HpaII CCGG 3 cut(s) 748, 774, 1341
HphI GGTGA 3 cut(s) 1331, 1353, 1378
Hpy166II GTNNAC 1 cut(s) 1046
Hpy188I TCNGA 4 cut(s) 334, 397, 1358, 1537
Hpy8I GTNNAC 1 cut(s) 1046
HpyAV CCTTC 5 cut(s) 152, 171, 289, 392, 1550
HpyCH4III ACNGT 3 cut(s) 306, 584, 1107
HpyCH4IV ACGT 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 839, 1457
HpyF3I CTNAG 4 cut(s) 86, 267, 331, 490
HpySE526I ACGT 1 cut(s) 126
Kzo9I GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
LmnI GCTCC 4 cut(s) 17, 218, 298, 1256
Lsp1109I GCAGC 2 cut(s) 7, 871
LweI GCATC 5 cut(s) 469, 820, 979, 1362, 1438
MabI ACCWGGT 2 cut(s) 406, 1315
MaeI CTAG 2 cut(s) 780, 1193
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 925
MalI GATC 6 cut(s) 142, 974, 1360, 1471, 1527, 1539
MboI GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
MboII GAAGA 6 cut(s) 142, 180, 832, 967, 970, 1560
MfeI CAATTG 1 cut(s) 1443
MflI RGATCY 2 cut(s) 140, 1537
MhlI GDGCHC 4 cut(s) 438, 475, 1261, 1341
MlyI GAGTC 2 cut(s) 631, 686
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 1397
MseI TTAA 6 cut(s) 113, 251, 570, 753, 950, 1119
MslI CAYNNNNRTG 4 cut(s) 441, 492, 870, 1428
MspI CCGG 3 cut(s) 748, 774, 1341
MspR9I CCNGG 6 cut(s) 408, 775, 1041, 1317, 1341, 1584
MssI GTTTAAAC 1 cut(s) 754
MunI CAATTG 1 cut(s) 1443
Mva1269I GAATGC 1 cut(s) 1347
MvaI CCWGG 4 cut(s) 408, 1041, 1317, 1584
MwoI GCNNNNNNNGC 3 cut(s) 479, 839, 1457
NciI CCSGG 2 cut(s) 775, 1341
NdeII GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
NlaIV GGNNCC 2 cut(s) 220, 1079
NmuCI GTSAC 1 cut(s) 925
NsiI ATGCAT 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 870
PaeR7I CTCGAG 1 cut(s) 1260
PagI TCATGA 3 cut(s) 577, 633, 1423
PaqCI CACCTGC 1 cut(s) 1372
PctI GAATGC 1 cut(s) 1347
PdmI GAANNNNTTC 1 cut(s) 1397
PfeI GAWTC 3 cut(s) 701, 1013, 1383
PflMI CCANNNNNTGG 3 cut(s) 530, 965, 1583
PinAI ACCGGT 1 cut(s) 747
PkrI GCNGC 3 cut(s) 22, 886, 1239
PleI GAGTC 2 cut(s) 631, 685
PmeI GTTTAAAC 1 cut(s) 754
PpsI GAGTC 2 cut(s) 631, 685
Ppu21I YACGTR 1 cut(s) 127
PshAI GACNNNNGTC 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 1261
Psp6I CCWGG 4 cut(s) 406, 1039, 1315, 1582
PspGI CCWGG 4 cut(s) 406, 1039, 1315, 1582
PspN4I GGNNCC 2 cut(s) 220, 1079
PspPI GGNCC 4 cut(s) 54, 956, 1055, 1078
PspXI VCTCGAGB 1 cut(s) 1260
PstI CTGCAG 3 cut(s) 25, 565, 1545
PstNI CAGNNNCTG 2 cut(s) 833, 1316
PsuI RGATCY 2 cut(s) 140, 1537
RsaI GTAC 2 cut(s) 419, 1314
RsaNI GTAC 2 cut(s) 418, 1313
RseI CAYNNNNRTG 4 cut(s) 441, 492, 870, 1428
SacI GAGCTC 1 cut(s) 1261
SaqAI TTAA 6 cut(s) 113, 251, 570, 753, 950, 1119
SatI GCNGC 3 cut(s) 21, 885, 1238
Sau3AI GATC 6 cut(s) 140, 972, 1358, 1469, 1525, 1537
Sau96I GGNCC 4 cut(s) 54, 956, 1055, 1078
SchI GAGTC 2 cut(s) 631, 686
ScrFI CCNGG 6 cut(s) 408, 775, 1041, 1317, 1341, 1584
SduI GDGCHC 4 cut(s) 438, 475, 1261, 1341
SexAI ACCWGGT 2 cut(s) 406, 1315
SfaNI GCATC 5 cut(s) 469, 820, 979, 1362, 1438
SfcI CTRYAG 4 cut(s) 21, 561, 1332, 1541
Sfr274I CTCGAG 1 cut(s) 1260
SinI GGWCC 2 cut(s) 54, 1055
SlaI CTCGAG 1 cut(s) 1260
SmiMI CAYNNNNRTG 4 cut(s) 441, 492, 870, 1428
SmlI CTYRAG 3 cut(s) 317, 731, 1260
SmoI CTYRAG 3 cut(s) 317, 731, 1260
SpeI ACTAGT 1 cut(s) 1192
SsiI CCGC 2 cut(s) 1237, 1412
SspMI CTAG 2 cut(s) 780, 1193
SstI GAGCTC 1 cut(s) 1261
StyD4I CCNGG 6 cut(s) 406, 773, 1039, 1315, 1339, 1582
TaaI ACNGT 3 cut(s) 306, 584, 1107
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 691, 1261
TauI GCSGC 1 cut(s) 1240
TfiI GAWTC 3 cut(s) 701, 1013, 1383
Tru1I TTAA 6 cut(s) 113, 251, 570, 753, 950, 1119
Tru9I TTAA 6 cut(s) 113, 251, 570, 753, 950, 1119
TscAI CASTG 3 cut(s) 30, 360, 1092
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 2 cut(s) 20, 884
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 4 cut(s) 622, 714, 1390, 1412
TspRI CASTG 3 cut(s) 30, 360, 1092
Van91I CCANNNNNTGG 3 cut(s) 530, 965, 1583
VpaK11BI GGWCC 2 cut(s) 54, 1055
XapI RAATTY 7 cut(s) 337, 544, 1115, 1272, 1306, 1397, 1511
XhoI CTCGAG 1 cut(s) 1260
XmnI GAANNNNTTC 1 cut(s) 1397
XspI CTAG 2 cut(s) 780, 1193
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.