RchiOBHm_Chr7g0222651

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
44239140 .. 44244747
5608 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19930

Sequence Viewer

Length: 1575 bp
ATGCAGGCTTGCAGTGGAGCTGCAGTTATGGGTTCTGTTCAACAGCCCACATGGCTTAGAGGAGCAGCTTTTCCAAATAGATTTCCACATCAAGTGAACCTTAATTTTGCAAAGACTGCTAGATCTTATTCTAACATCCAAGGAAGCTTGGTTGCTGGGAGGCCATCCTCTCCGGCTTCAGTGCATGTGCCTGAATTTGGAGATATTGGAAGCAGTTTTGTAGATAATGGCTTAAGTGAGGCTGACCCTGAGGTGCGTGCTATTATTGACAAGGAGAAAGAGCGGCAGTTCAAAAGCCTTGAGCTCATTGCCTCAGAGAATTTCACTTCACGGGCAGTAATGGAGGCAGTTGGCTCATGTCTCACAAACAAGTATTCGGAAGGATTACCTGGGAAAAGGTACTATGGTGGAAATGAGCACATTGATGAGCTTGAAACACTATGCCAAAAAAGGGCCCTGGATGCATTTCACCTAGATGGAAACAAGTGGGGCGTCAATGTTCAACCATTATCTGGTTCTCCAGCTAATTTTGAGGTTTATACAGCAGTTCTCAATCCTCATGATCGTATCATGGGTTTGGACTTGCCACACGGGGGACATTTGTCTCATGGGTTCATGACTCCTAAAAGACGGGTATCAGGAACATCTATTTATTTTGAGTCCATGCCTTACCGACTTGATGAATCCACAGGTCTGGTTGATTATGACATGCTTGAGAAAACAGCAACCCTATTTCGACCTAAACTCATTATTGTTGGGGCCAGTGCTTATCCTCGAGATTTTGACTACCCTCGCATGAGGAAGATTGCGGATGCTGCTGGTGCTTTTCTTATGATGGATATGGCTCACATAAGTGGGCTTGTTGCTGCTTCTGTGGTTGCCAATCCCTTTGACTACTGTGATATTGTGACAACAACAACCCACAAGTCTCTAAGGGGTCCAAGAGGTGGAATGATATTCTTCAAGAAGGATCCAGTTCTTGGAGTTGATTTAGAAACTGCCATCAATAACGCTGTTTTCCCGGGCTTACAGGGTGGTCCTCATAACCACACTATTGGGGGCCTTGCAGTTTGCTTGAAGCATGCTCAGTCTGCAGAATTTAAGGCTTACCAGAATCAGGTGGTCTCTAATTGCAGGGCTCTTGCAAGCCGATTGGTTGAACTTGAATACACACTGGTTTCTGGTGGAAGCGATAACCACCTGGTTCTTGTCGATCTGCGTCCCTTTGGCATTGATGGTGCTCGGGTGGAGAAAATTCTTGACATGGCTTCTATTACTCTTAACAAGAATTCAGTACCCGGTGATAAAAGTGCTCTAATGCCTGGTGGTATTCGCATCGGAACACCTGCTATGACGACACGAGGATTCACTGAGAAAGACTTCATAGCAACTGCAGACTACATTCACGAGGGTGTGCGGATAGCGATTGATGCTAAAAGCAAAGCCCCGGGCTCAAAGCTCCAAGAGTTTTTAAAGCATGTTGCAACCCCTGAATTCCCTCTAATTGATCGAGTTTCAGATTTGCGGACGAAAGTCGAAGCTCTTACCACCCAATTCCCGATGCCTGGAGTATGA

Protein Analysis

524

Amino Acids

56.96

Weight (kDa)

6.77

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 78 - 468 3.6e-191 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1354
Acc36I ACCTGC 1 cut(s) 1354
AccB7I CCANNNNNTGG 3 cut(s) 512, 947, 980
AccBSI CCGCTC 1 cut(s) 283
AciI CCGC 4 cut(s) 283, 809, 1417, 1525
AclWI GGATC 2 cut(s) 965, 978
AcsI RAATTY 6 cut(s) 194, 319, 1097, 1254, 1288, 1493
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 2 cut(s) 401, 1296
AfiI CCNNNNNNNGG 8 cut(s) 197, 451, 512, 593, 947, 980, 1117, 1565
AflII CTTAAG 1 cut(s) 232
AgsI TTSAA 8 cut(s) 41, 292, 434, 503, 964, 1078, 1160, 1166
AjnI CCWGG 5 cut(s) 388, 456, 1200, 1321, 1564
AleI CACNNNNGTG 2 cut(s) 852, 1410
AluBI AGCT 8 cut(s) 20, 68, 147, 304, 430, 524, 1459, 1541
AluI AGCT 8 cut(s) 20, 68, 147, 304, 430, 524, 1459, 1541
Alw21I GWGCWC 4 cut(s) 306, 420, 1243, 1315
Alw26I GTCTC 4 cut(s) 365, 609, 933, 1129
AlwI GGATC 2 cut(s) 965, 978
Ama87I CYCGRG 4 cut(s) 774, 1021, 1242, 1447
AoxI GGCC 4 cut(s) 161, 453, 759, 1060
ApaI GGGCCC 1 cut(s) 457
ApeKI GCWGC 4 cut(s) 20, 65, 815, 866
ApoI RAATTY 6 cut(s) 194, 319, 1097, 1254, 1288, 1493
Asp700I GAANNNNTTC 1 cut(s) 1379
AspS9I GGNCC 6 cut(s) 453, 454, 759, 938, 1037, 1060
AsuC2I CCSGG 5 cut(s) 1022, 1023, 1299, 1448, 1449
AsuHPI GGTGA 2 cut(s) 461, 1313
AvaI CYCGRG 4 cut(s) 774, 1021, 1242, 1447
AvaII GGWCC 2 cut(s) 938, 1037
AxyI CCTNAGG 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 457
BaeI ACNNNNGTAYC 2 cut(s) 391, 424
BamHI GGATCC 1 cut(s) 970
BanII GRGCYC 4 cut(s) 306, 457, 1141, 1454
BauI CACGAG 2 cut(s) 1359, 1406
Bbv12I GWGCWC 4 cut(s) 306, 420, 1243, 1315
BbvI GCAGC 4 cut(s) 7, 77, 802, 853
BccI CCATC 5 cut(s) 172, 470, 829, 1010, 1229
BciT130I CCWGG 5 cut(s) 390, 458, 1202, 1323, 1566
BcnI CCSGG 5 cut(s) 1022, 1023, 1299, 1448, 1449
BcoDI GTCTC 4 cut(s) 365, 609, 933, 1129
BfaI CTAG 2 cut(s) 120, 473
BfmI CTRYAG 3 cut(s) 21, 1092, 1392
BfrI CTTAAG 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 1354
BglI GCCNNNNNGGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 122
BisI GCNGC 5 cut(s) 21, 66, 284, 816, 867
BlsI GCNGC 5 cut(s) 22, 67, 285, 817, 868
Bme18I GGWCC 2 cut(s) 938, 1037
BmeT110I CYCGRG 4 cut(s) 774, 1021, 1242, 1447
BmgT120I GGNCC 6 cut(s) 453, 454, 759, 938, 1037, 1060
BmiI GGNNCC 5 cut(s) 455, 760, 939, 972, 1061
BmsI GCATC 5 cut(s) 451, 802, 1344, 1420, 1551
BoxI GACNNNNGTC 2 cut(s) 601, 1532
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 2 cut(s) 320, 734
BpuMI CCSGG 5 cut(s) 1022, 1023, 1299, 1448, 1449
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 1129
BsaJI CCNNGG 6 cut(s) 139, 389, 456, 1021, 1446, 1447
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 8 cut(s) 197, 451, 512, 593, 947, 980, 1117, 1565
Bse1I ACTGG 3 cut(s) 762, 974, 1179
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 5 cut(s) 390, 458, 1202, 1323, 1566
BseDI CCNNGG 6 cut(s) 139, 389, 456, 1021, 1446, 1447
BseGI GGATG 4 cut(s) 135, 164, 466, 817
BseLI CCNNNNNNNGG 8 cut(s) 197, 451, 512, 593, 947, 980, 1117, 1565
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 4 cut(s) 240, 327, 1100, 1362
BseNI ACTGG 3 cut(s) 762, 974, 1179
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 4 cut(s) 7, 77, 802, 853
BseYI CCCAGC 1 cut(s) 155
BshFI GGCC 4 cut(s) 163, 455, 761, 1062
BsiHKAI GWGCWC 4 cut(s) 306, 420, 1243, 1315
BsiHKCI CYCGRG 4 cut(s) 774, 1021, 1242, 1447
BsiSI CCGG 4 cut(s) 173, 1022, 1299, 1448
BslFI GGGAC 2 cut(s) 609, 1206
BslI CCNNNNNNNGG 8 cut(s) 197, 451, 512, 593, 947, 980, 1117, 1565
BsmAI GTCTC 4 cut(s) 365, 609, 933, 1129
BsmFI GGGAC 2 cut(s) 609, 1206
BsnI GGCC 4 cut(s) 163, 455, 761, 1062
Bso31I GGTCTC 1 cut(s) 1129
BsoBI CYCGRG 4 cut(s) 774, 1021, 1242, 1447
Bsp120I GGGCCC 1 cut(s) 453
Bsp1286I GDGCHC 7 cut(s) 306, 420, 457, 1141, 1243, 1315, 1454
Bsp143I GATC 5 cut(s) 122, 562, 970, 1213, 1507
BspACI CCGC 4 cut(s) 283, 809, 1417, 1525
BspANI GGCC 4 cut(s) 163, 455, 761, 1062
BspCNI CTCAG 4 cut(s) 241, 326, 1099, 1363
BspHI TCATGA 2 cut(s) 559, 615
BspLI GGNNCC 5 cut(s) 455, 760, 939, 972, 1061
BspMAI CTGCAG 3 cut(s) 25, 1096, 1396
BspMI ACCTGC 1 cut(s) 1354
BspPI GGATC 2 cut(s) 965, 978
BspTI CTTAAG 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 1129
BsrBI CCGCTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 306
BsrI ACTGG 3 cut(s) 762, 974, 1179
BssECI CCNNGG 6 cut(s) 139, 389, 456, 1021, 1446, 1447
BssMI GATC 5 cut(s) 122, 562, 970, 1213, 1507
BssNI GRCGYC 1 cut(s) 492
BssSI CACGAG 2 cut(s) 1359, 1406
BssT1I CCWWGG 1 cut(s) 139
Bst2BI CACGAG 2 cut(s) 1359, 1406
Bst2UI CCWGG 5 cut(s) 390, 458, 1202, 1323, 1566
Bst4CI ACNGT 1 cut(s) 899
BstACI GRCGYC 1 cut(s) 492
BstAFI CTTAAG 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 5 cut(s) 6, 10, 258, 1083, 1147
BstDEI CTNAG 6 cut(s) 56, 249, 313, 932, 1086, 1371
BstF5I GGATG 4 cut(s) 135, 164, 466, 817
BstKTI GATC 5 cut(s) 125, 565, 973, 1216, 1510
BstMAI GTCTC 4 cut(s) 365, 609, 933, 1129
BstMBI GATC 5 cut(s) 122, 562, 970, 1213, 1507
BstMWI GCNNNNNNNGC 7 cut(s) 52, 116, 461, 815, 821, 1091, 1430
BstNI CCWGG 5 cut(s) 390, 458, 1202, 1323, 1566
BstNSI RCATGY 4 cut(s) 188, 712, 1085, 1481
BstPAI GACNNNNGTC 2 cut(s) 601, 1532
BstSFI CTRYAG 3 cut(s) 21, 1092, 1392
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 4 cut(s) 7, 77, 802, 853
BstX2I RGATCY 2 cut(s) 122, 970
BstXI CCANNNNNNTGG 2 cut(s) 694, 1055
BstYI RGATCY 2 cut(s) 122, 970
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 4 cut(s) 163, 455, 761, 1062
BtsCI GGATG 4 cut(s) 135, 164, 466, 817
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 5 cut(s) 19, 186, 769, 1172, 1368
BveI ACCTGC 1 cut(s) 1354
Cac8I GCNNGC 5 cut(s) 6, 10, 258, 1083, 1147
CciI TCATGA 2 cut(s) 559, 615
Cfr13I GGNCC 6 cut(s) 453, 454, 759, 938, 1037, 1060
Cfr9I CCCGGG 2 cut(s) 1021, 1447
CseI GACGC 2 cut(s) 481, 1208
CsiI ACCWGGT 1 cut(s) 1200
Csp6I GTAC 2 cut(s) 400, 1295
CviQI GTAC 2 cut(s) 400, 1295
DdeI CTNAG 6 cut(s) 56, 249, 313, 932, 1086, 1371
DpnI GATC 5 cut(s) 124, 564, 972, 1215, 1509
DpnII GATC 5 cut(s) 122, 562, 970, 1213, 1507
DraI TTTAAA 1 cut(s) 1473
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 139
Eco24I GRGCYC 4 cut(s) 306, 457, 1141, 1454
Eco31I GGTCTC 1 cut(s) 1129
Eco47I GGWCC 2 cut(s) 938, 1037
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 249
Eco88I CYCGRG 4 cut(s) 774, 1021, 1242, 1447
EcoICRI GAGCTC 1 cut(s) 304
EcoO109I RGGNCCY 3 cut(s) 453, 454, 1060
EcoRI GAATTC 2 cut(s) 1288, 1493
EcoRII CCWGG 5 cut(s) 388, 456, 1200, 1321, 1564
EcoT14I CCWWGG 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 466
EcoT38I GRGCYC 4 cut(s) 306, 457, 1141, 1454
ErhI CCWWGG 1 cut(s) 139
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 2 cut(s) 609, 1206
Fnu4HI GCNGC 5 cut(s) 21, 66, 284, 816, 867
FokI GGATG 4 cut(s) 122, 151, 473, 824
FriOI GRGCYC 4 cut(s) 306, 457, 1141, 1454
Fsp4HI GCNGC 5 cut(s) 21, 66, 284, 816, 867
FspBI CTAG 2 cut(s) 120, 473
GluI GCNGC 5 cut(s) 21, 66, 284, 816, 867
GsaI CCCAGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 4 cut(s) 163, 455, 761, 1062
HapII CCGG 4 cut(s) 173, 1022, 1299, 1448
HgaI GACGC 2 cut(s) 481, 1208
Hin1I GRCGYC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 5 cut(s) 619, 659, 683, 1114, 1365
HpaII CCGG 4 cut(s) 173, 1022, 1299, 1448
HphI GGTGA 2 cut(s) 461, 1313
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 4 cut(s) 316, 379, 1340, 1519
Hpy188III TCNNGA 8 cut(s) 560, 616, 639, 776, 964, 1259, 1406, 1558
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 374, 961
HpyCH4III ACNGT 1 cut(s) 899
HpyF10VI GCNNNNNNNGC 7 cut(s) 52, 116, 461, 815, 821, 1091, 1430
HpyF3I CTNAG 6 cut(s) 56, 249, 313, 932, 1086, 1371
Hsp92I GRCGYC 1 cut(s) 492
Kzo9I GATC 5 cut(s) 122, 562, 970, 1213, 1507
LmnI GCTCC 3 cut(s) 17, 62, 1464
Lsp1109I GCAGC 4 cut(s) 7, 77, 802, 853
LweI GCATC 5 cut(s) 451, 802, 1344, 1420, 1551
MabI ACCWGGT 1 cut(s) 1200
MaeI CTAG 2 cut(s) 120, 473
MaeIII GTNAC 1 cut(s) 907
MalI GATC 5 cut(s) 124, 564, 972, 1215, 1509
MbiI CCGCTC 1 cut(s) 283
MboI GATC 5 cut(s) 122, 562, 970, 1213, 1507
MboII GAAGA 2 cut(s) 814, 952
MflI RGATCY 2 cut(s) 122, 970
MhlI GDGCHC 7 cut(s) 306, 420, 457, 1141, 1243, 1315, 1454
MlyI GAGTC 2 cut(s) 613, 668
Mph1103I ATGCAT 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 1379
MseI TTAA 5 cut(s) 102, 233, 1101, 1281, 1472
MslI CAYNNNNRTG 4 cut(s) 423, 474, 852, 1410
MspCI CTTAAG 1 cut(s) 232
MspI CCGG 4 cut(s) 173, 1022, 1299, 1448
MvaI CCWGG 5 cut(s) 390, 458, 1202, 1323, 1566
MwoI GCNNNNNNNGC 7 cut(s) 52, 116, 461, 815, 821, 1091, 1430
NciI CCSGG 5 cut(s) 1022, 1023, 1299, 1448, 1449
NdeII GATC 5 cut(s) 122, 562, 970, 1213, 1507
NlaIV GGNNCC 5 cut(s) 455, 760, 939, 972, 1061
NmuCI GTSAC 1 cut(s) 907
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 4 cut(s) 188, 712, 1085, 1481
OliI CACNNNNGTG 2 cut(s) 852, 1410
PaeI GCATGC 1 cut(s) 1085
PaeR7I CTCGAG 1 cut(s) 774
PagI TCATGA 2 cut(s) 559, 615
PaqCI CACCTGC 1 cut(s) 1354
PdmI GAANNNNTTC 1 cut(s) 1379
PfeI GAWTC 3 cut(s) 683, 1114, 1365
PflMI CCANNNNNTGG 3 cut(s) 512, 947, 980
PkrI GCNGC 5 cut(s) 22, 67, 285, 817, 868
PleI GAGTC 2 cut(s) 613, 667
PpsI GAGTC 2 cut(s) 613, 667
PshAI GACNNNNGTC 2 cut(s) 601, 1532
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 5 cut(s) 388, 456, 1200, 1321, 1564
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 5 cut(s) 388, 456, 1200, 1321, 1564
PspN4I GGNNCC 5 cut(s) 455, 760, 939, 972, 1061
PspOMI GGGCCC 1 cut(s) 453
PspPI GGNCC 6 cut(s) 453, 454, 759, 938, 1037, 1060
PstI CTGCAG 3 cut(s) 25, 1096, 1396
PsuI RGATCY 2 cut(s) 122, 970
RsaI GTAC 2 cut(s) 401, 1296
RsaNI GTAC 2 cut(s) 400, 1295
RseI CAYNNNNRTG 4 cut(s) 423, 474, 852, 1410
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 5 cut(s) 102, 233, 1101, 1281, 1472
SatI GCNGC 5 cut(s) 21, 66, 284, 816, 867
Sau3AI GATC 5 cut(s) 122, 562, 970, 1213, 1507
Sau96I GGNCC 6 cut(s) 453, 454, 759, 938, 1037, 1060
SchI GAGTC 2 cut(s) 613, 668
SduI GDGCHC 7 cut(s) 306, 420, 457, 1141, 1243, 1315, 1454
SexAI ACCWGGT 1 cut(s) 1200
SfaNI GCATC 5 cut(s) 451, 802, 1344, 1420, 1551
SfcI CTRYAG 3 cut(s) 21, 1092, 1392
Sfr274I CTCGAG 1 cut(s) 774
SinI GGWCC 2 cut(s) 938, 1037
SlaI CTCGAG 1 cut(s) 774
SmaI CCCGGG 2 cut(s) 1023, 1449
SmiMI CAYNNNNRTG 4 cut(s) 423, 474, 852, 1410
SmlI CTYRAG 4 cut(s) 232, 299, 713, 774
SmoI CTYRAG 4 cut(s) 232, 299, 713, 774
SphI GCATGC 1 cut(s) 1085
SsiI CCGC 4 cut(s) 283, 809, 1417, 1525
SspMI CTAG 2 cut(s) 120, 473
SstI GAGCTC 1 cut(s) 306
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 899
TaqI TCGA 5 cut(s) 736, 775, 1212, 1510, 1536
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 3 cut(s) 683, 1114, 1365
Tru1I TTAA 5 cut(s) 102, 233, 1101, 1281, 1472
Tru9I TTAA 5 cut(s) 102, 233, 1101, 1281, 1472
TscAI CASTG 5 cut(s) 19, 186, 769, 1179, 1375
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 4 cut(s) 20, 65, 815, 866
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 3 cut(s) 604, 696, 1372
TspMI CCCGGG 2 cut(s) 1021, 1447
TspRI CASTG 5 cut(s) 19, 186, 769, 1179, 1375
Van91I CCANNNNNTGG 3 cut(s) 512, 947, 980
Vha464I CTTAAG 1 cut(s) 232
VpaK11BI GGWCC 2 cut(s) 938, 1037
XapI RAATTY 6 cut(s) 194, 319, 1097, 1254, 1288, 1493
XceI RCATGY 4 cut(s) 188, 712, 1085, 1481
XhoI CTCGAG 1 cut(s) 774
XmaI CCCGGG 2 cut(s) 1021, 1447
XmnI GAANNNNTTC 1 cut(s) 1379
XspI CTAG 2 cut(s) 120, 473
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.