Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009132

Physical Location & Seq

Genomic Coordinates Reverse (-)

18664988 .. 18667930

Gene Structure 2943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTAGTAACAACAGCCGAGGGAAATGAGCTACGCTCCTTCAAGTTCAAAGAGGAAGATGAAAGCCAAGAGGTGCGTGCCGTGGAAAGGAGAATATTACTGGAGACTCTTGCCAATCAACTACCCCAAGGGGCGGTTCGTTTCTCTTCAAAGCTTGCAAAGATTGAGAAGAGTGAAGATGGAGACACTTTGCTGCAACTTGTGGATGGTACTCAGCTATCTGCTAAGATTGTAATTGGCTGTGATGGAATTCGGTCTCCTATAGCTAAGTGGATGGGGTTCCCTGAGCCTAAGTATGCAGGGCATTGTGGTCTTCGAGGCCTTGCATTCTTTCCCGGTGGCCATAAATTTGAACCAAAACTGAATCAAATCTATGGAAGAGGGCAGCGTGCTGGAATTGTTCCTATTTCTCCTACAAAAGTCTACTGGTTTGTCTGCTTCAACAGGCCATCTCCAGGTCCAAAAATTACTGACCCAGCTGTGCTAAAGAAGCTAGCTAGAGAACTGGTAACAAACTGGCCTTCAGACCTGTTGGACATTATAGACCATACCCCGGATGACACAATTAGTCGAACACCACTAGTAGACCGGTGGCTGTGGCCATCCATCAGCCCTCCGGCTTCAGCAGGAAGAGTTGTGCTGGTTGGAGATGCTTGGCATCCAATGACTCCCAATCTTGGACAAGGCGCTTGTTGTGCTTTGGAAGATTCAGTAATTTTGGCACGAAAGCTTGCAGCGGCGATTGACTCAGGACCAGCAGCCATTGAAGATGCTCTCAGCTCATATGGAAATGAAAGATGGCCTCGAATTTTTCCGCTAACCATACGTGCAAATCTCATAGGGTCACTACTGCAGTGGGAGAATCCTGTTGTGTTTTCTGTCCGGAACAATGTCATTATCCCAAAGCTTGTTAAGCTAGGACCAATGTTGGAACACACAAATTTTGACTGCCAGCCTCTCCAGAATCAAGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0016740 GO:0016741 GO:0016742 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00260 ko00460 ko00630 ko00670 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko01523 map00260 map00460 map00630 map00670 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map01523

Pfam Domains

Protein Families

SHMT

Protein Analysis

325

Amino Acids

35.84

Weight (kDa)

7.62

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	34 - 269	2.1e-16	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32520 AT4G32520
fragaria_vesca	FvH4_7g07540 FvH4_7g07540 FvH4_7g07540
malus_domestica	MD09G1269900.v1.1 MD10G1009100.v1.1 MD17G1267800.v1.1
prunus_persica	Prupe.3G165800_v2.0.a1 Prupe.8G013000_v2.0.a1 Prupe.8G013000_v2.0.a1 Prupe.8G013000_v2.0.a1
pyrus_communis	pycom09g18110 pycom10g00550
rosa_chinensis	RchiOBHm_Chr7g0222651
rosa_laevigata	RLG00000002041
rosa_multiflora	Rmu_sc0001498.1_g000007
rosa_roxburghii	Rroxscaffold_3G00236570
rosa_rugosa	Rorug07G0211700
rosa_samantha	Rh7AG355300 Rh7BG343700
rosa_wichuraiana	Rw7G030180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	423, 585
AccIII	TCCGGA	1 cut(s)	882
AciI	CCGC	3 cut(s)	134, 737, 815
AcoI	YGGCCR	2 cut(s)	340, 599
AcsI	RAATTY	4 cut(s)	249, 347, 807, 940
AcuI	CTGAAG	2 cut(s)	507, 606
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	5 cut(s)	87, 133, 455, 553, 677
AgeI	ACCGGT	1 cut(s)	588
AgsI	TTSAA	6 cut(s)	43, 49, 150, 353, 442, 767
AhlI	ACTAGT	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	454
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
Alw26I	GTCTC	3 cut(s)	98, 177, 261
Aor13HI	TCCGGA	1 cut(s)	882
AoxI	GGCC	6 cut(s)	319, 340, 446, 518, 599, 800
ApeKI	GCWGC	4 cut(s)	193, 385, 734, 758
ApoI	RAATTY	4 cut(s)	249, 347, 807, 940
AsiGI	ACCGGT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	3 cut(s)	458, 752, 920
AsuC2I	CCSGG	2 cut(s)	336, 554
AsuNHI	GCTAGC	1 cut(s)	493
AvaII	GGWCC	3 cut(s)	458, 752, 920
BalI	TGGCCA	2 cut(s)	342, 601
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	180, 397, 746, 770
BccI	CCATC	8 cut(s)	173, 200, 239, 268, 457, 610, 614, 792
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	2 cut(s)	336, 554
BcoDI	GTCTC	3 cut(s)	98, 177, 261
BcuI	ACTAGT	1 cut(s)	580
BfaI	CTAG	4 cut(s)	494, 498, 581, 917
BfmI	CTRYAG	2 cut(s)	261, 851
BfoI	RGCGCY	1 cut(s)	690
BisI	GCNGC	5 cut(s)	194, 386, 735, 738, 759
BlsI	GCNGC	5 cut(s)	195, 387, 736, 739, 760
Bme1390I	CCNGG	3 cut(s)	336, 456, 554
Bme18I	GGWCC	3 cut(s)	458, 752, 920
BmgT120I	GGNCC	3 cut(s)	458, 752, 920
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	3 cut(s)	336, 456, 554
BmsI	GCATC	3 cut(s)	640, 667, 760
BmtI	GCTAGC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	305
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	3 cut(s)	122, 438, 944
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	336, 554
BsaAI	YACGTR	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	261
BsaJI	CCNNGG	4 cut(s)	18, 81, 127, 552
BsaWI	WCCGGW	2 cut(s)	588, 882
Bsc4I	CCNNNNNNNGG	5 cut(s)	87, 133, 455, 553, 677
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	4 cut(s)	105, 431, 510, 521
BseAI	TCCGGA	1 cut(s)	882
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	18, 81, 127, 552
BseGI	GGATG	5 cut(s)	211, 279, 562, 602, 658
BseLI	CCNNNNNNNGG	5 cut(s)	87, 133, 455, 553, 677
BseMII	CTCAG	4 cut(s)	227, 276, 762, 790
BseNI	ACTGG	4 cut(s)	105, 431, 510, 521
BseXI	GCAGC	4 cut(s)	180, 397, 746, 770
BseYI	CCCAGC	1 cut(s)	475
BshFI	GGCC	6 cut(s)	321, 342, 448, 520, 601, 802
BshTI	ACCGGT	1 cut(s)	588
BsiSI	CCGG	5 cut(s)	336, 554, 589, 617, 883
BslI	CCNNNNNNNGG	5 cut(s)	87, 133, 455, 553, 677
BsmAI	GTCTC	3 cut(s)	98, 177, 261
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	6 cut(s)	321, 342, 448, 520, 601, 802
Bso31I	GGTCTC	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	882
BspACI	CCGC	3 cut(s)	134, 737, 815
BspANI	GGCC	6 cut(s)	321, 342, 448, 520, 601, 802
BspCNI	CTCAG	4 cut(s)	226, 277, 761, 789
BspEI	TCCGGA	1 cut(s)	882
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	855
BspOI	GCTAGC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	4 cut(s)	105, 431, 510, 521
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	4 cut(s)	18, 81, 127, 552
BssT1I	CCWWGG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	456
Bst6I	CTCTTC	4 cut(s)	151, 164, 373, 625
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	6 cut(s)	78, 156, 390, 495, 732, 953
BstDEI	CTNAG	7 cut(s)	213, 225, 267, 285, 291, 748, 776
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	5 cut(s)	211, 279, 562, 602, 658
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstMAI	GTCTC	3 cut(s)	98, 177, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	490, 695, 913
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	3 cut(s)	334, 454, 552
BstSFI	CTRYAG	2 cut(s)	261, 851
BstV1I	GCAGC	4 cut(s)	180, 397, 746, 770
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	6 cut(s)	321, 342, 448, 520, 601, 802
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	211, 279, 562, 602, 658
BtsI	GCAGTG	1 cut(s)	860
BtsIMutI	CAGTG	1 cut(s)	860
Cac8I	GCNNGC	6 cut(s)	78, 156, 390, 495, 732, 953
CfoI	GCGC	1 cut(s)	689
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	3 cut(s)	458, 752, 920
Csp6I	GTAC	1 cut(s)	210
CspAI	ACCGGT	1 cut(s)	588
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	7 cut(s)	213, 225, 267, 285, 291, 748, 776
EaeI	YGGCCR	2 cut(s)	340, 599
Eam1104I	CTCTTC	4 cut(s)	151, 164, 373, 625
EarI	CTCTTC	4 cut(s)	151, 164, 373, 625
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	321
Eco31I	GGTCTC	1 cut(s)	261
Eco47I	GGWCC	3 cut(s)	458, 752, 920
Eco57I	CTGAAG	2 cut(s)	507, 606
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FauNDI	CATATG	1 cut(s)	784
FblI	GTMKAC	2 cut(s)	423, 585
Fnu4HI	GCNGC	5 cut(s)	194, 386, 735, 738, 759
FokI	GGATG	5 cut(s)	218, 286, 569, 589, 645
Fsp4HI	GCNGC	5 cut(s)	194, 386, 735, 738, 759
FspBI	CTAG	4 cut(s)	494, 498, 581, 917
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	5 cut(s)	194, 386, 735, 738, 759
GsaI	CCCAGC	1 cut(s)	479
GsuI	CTGGAG	3 cut(s)	122, 438, 944
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	6 cut(s)	321, 342, 448, 520, 601, 802
HapII	CCGG	5 cut(s)	336, 554, 589, 617, 883
HhaI	GCGC	1 cut(s)	689
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HindIII	AAGCTT	3 cut(s)	152, 728, 905
HinfI	GANTC	7 cut(s)	106, 364, 667, 707, 746, 862, 964
HpaII	CCGG	5 cut(s)	336, 554, 589, 617, 883
Hpy166II	GTNNAC	2 cut(s)	424, 586
Hpy188I	TCNGA	1 cut(s)	526
Hpy188III	TCNNGA	3 cut(s)	750, 883, 961
Hpy8I	GTNNAC	2 cut(s)	424, 586
HpyAV	CCTTC	2 cut(s)	49, 531
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	7 cut(s)	158, 196, 299, 326, 734, 830, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	490, 695, 913
HpyF3I	CTNAG	7 cut(s)	213, 225, 267, 285, 291, 748, 776
HpySE526I	ACGT	1 cut(s)	826
HspAI	GCGC	1 cut(s)	687
Kpn2I	TCCGGA	1 cut(s)	882
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	4 cut(s)	180, 397, 746, 770
LweI	GCATC	3 cut(s)	640, 667, 760
MaeI	CTAG	4 cut(s)	494, 498, 581, 917
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	3 cut(s)	7, 508, 843
MboII	GAAGA	9 cut(s)	68, 138, 181, 188, 305, 390, 642, 716, 779
MlsI	TGGCCA	2 cut(s)	342, 601
MluCI	AATT	9 cut(s)	234, 249, 347, 396, 465, 564, 714, 807, 940
MluNI	TGGCCA	2 cut(s)	342, 601
MlyI	GAGTC	3 cut(s)	100, 661, 740
MmeI	TCCRAC	3 cut(s)	513, 625, 909
MnlI	CCTC	8 cut(s)	13, 46, 64, 311, 374, 624, 813, 966
Mox20I	TGGCCA	2 cut(s)	342, 601
MroI	TCCGGA	1 cut(s)	882
MscI	TGGCCA	2 cut(s)	342, 601
MseI	TTAA	1 cut(s)	912
Msp20I	TGGCCA	2 cut(s)	342, 601
MspA1I	CMGCKG	2 cut(s)	479, 737
MspI	CCGG	5 cut(s)	336, 554, 589, 617, 883
MspR9I	CCNGG	3 cut(s)	336, 456, 554
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	490, 695, 913
NciI	CCSGG	2 cut(s)	336, 554
NdeI	CATATG	1 cut(s)	784
NheI	GCTAGC	1 cut(s)	493
NlaIV	GGNNCC	1 cut(s)	281
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	843
PceI	AGGCCT	1 cut(s)	321
PctI	GAATGC	1 cut(s)	326
PfeI	GAWTC	4 cut(s)	364, 707, 862, 964
PinAI	ACCGGT	1 cut(s)	588
PkrI	GCNGC	5 cut(s)	195, 387, 736, 739, 760
PleI	GAGTC	3 cut(s)	100, 661, 740
PpsI	GAGTC	3 cut(s)	100, 661, 740
Ppu21I	YACGTR	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	3 cut(s)	458, 752, 920
PstI	CTGCAG	1 cut(s)	855
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	912
SatI	GCNGC	5 cut(s)	194, 386, 735, 738, 759
Sau96I	GGNCC	3 cut(s)	458, 752, 920
SchI	GAGTC	3 cut(s)	100, 661, 740
ScrFI	CCNGG	3 cut(s)	336, 456, 554
SfaNI	GCATC	3 cut(s)	640, 667, 760
SfcI	CTRYAG	2 cut(s)	261, 851
SinI	GGWCC	3 cut(s)	458, 752, 920
SpeI	ACTAGT	1 cut(s)	580
Sse9I	AATT	9 cut(s)	234, 249, 347, 396, 465, 564, 714, 807, 940
SseBI	AGGCCT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	134, 737, 815
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	4 cut(s)	494, 498, 581, 917
StuI	AGGCCT	1 cut(s)	321
StyD4I	CCNGG	3 cut(s)	334, 454, 552
StyI	CCWWGG	1 cut(s)	127
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	3 cut(s)	316, 571, 805
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	9 cut(s)	234, 249, 347, 396, 465, 564, 714, 807, 940
TauI	GCSGC	1 cut(s)	740
TfiI	GAWTC	4 cut(s)	364, 707, 862, 964
Tru1I	TTAA	1 cut(s)	912
Tru9I	TTAA	1 cut(s)	912
TscAI	CASTG	1 cut(s)	860
TseFI	GTSAC	1 cut(s)	843
TseI	GCWGC	4 cut(s)	193, 385, 734, 758
Tsp45I	GTSAC	1 cut(s)	843
TspDTI	ATGAA	2 cut(s)	75, 807
TspRI	CASTG	1 cut(s)	860
VpaK11BI	GGWCC	3 cut(s)	458, 752, 920
XapI	RAATTY	4 cut(s)	249, 347, 807, 940
XmiI	GTMKAC	2 cut(s)	423, 585
XspI	CTAG	4 cut(s)	494, 498, 581, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.