Rmu_sc0001498.1_g000007

Serine hydroxymethyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001498.1
Physical Location & Seq
Forward (+)
26387 .. 29815
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001498.1_g000007.1.cds

Sequence Viewer

Length: 1437 bp
atgcaggcttgcagtggagctgcagttatgggttctgttcagcagcccacatggcttagaggagcagcttttccaaatagacgacttagcattagtggatttccacatcaagtgaaccttaattttgcaaagactgctagatcttattctaacatccaaggaagcttggttgctgggaggccatcctctccggcttcagtgcatgtgcctgaatttggagatattggaagcagttttgtagataatggcttaagtgaggctgaccctgaggtgcgtgctattattgacaaggagaaagagcggcagttcaaaagccttgagcttattgcctcagagaatttcacttcacgggcagtaatggaggcagttggctcatgtctcacaaacaagtattcggaaggattacctgggaaaaggtactatggtggaaatgagcacattgatgagcttgaaacactatgccaaaaaagggccctggatgcatttcacctagatggaaagaagtggggcgtcaatgttcaaccattatctggttctccagctaatttcgaggtttatacagcagttctcaatcctcatgatcgtatcatggtaaggtgtcctaaactcattattgttggggccagtgcttatcctcgagattttgactaccctcgcatgaggaagattgcggatgctgctggtgcttttcttatgatggatatggctcacataagtgggcttgttgctgcttctgtggttgccaatccctttgactactgtgatattgtgacaacaacaacccacaagtctctaaggggtccaagaggtggaatgatattcttcaagaaggatccagttcttggagttgatttagaaactgccatcaacaatgctgttttcccgggcttacagggtggtcctcataaccacactattgggggccttgcagtttgcttgaagcatgctcagtctgcagaatttaaggcttaccagaatcaggtggtctctaattgcagggctcttgcaagccgattggttgaacttgaatacacactggtttctggtggaagcgataaccacctggttcttgtcgatctgcgtccctttggcattgatggtgctcgggtggagaaaattcttgacatggcttctattactcttaacaagaattcagtacccggtgataaaagtgctctaatgcctggtggtattcgcatcggaacacctgctatgacgacacgaggattcactgagaaagacttcatagcaactgcagactacattcacgagggtgtgcggatagcgattgatgctaaaagcaaagccccgggctcaaagctccaagagtttttaaagcatgttgcaacccctgaattccccctaattgatcgagtttcagatttgcggacaaaagtcgaagctcttaccacccaattcccgatgcctggagtatga

Protein Analysis

478

Amino Acids

51.73

Weight (kDa)

8.08

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1216
Acc36I ACCTGC 1 cut(s) 1216
AccB7I CCANNNNNTGG 3 cut(s) 530, 809, 842
AccBSI CCGCTC 1 cut(s) 301
AciI CCGC 4 cut(s) 301, 671, 1279, 1387
AclWI GGATC 2 cut(s) 827, 840
AcsI RAATTY 6 cut(s) 212, 337, 959, 1116, 1150, 1355
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 2 cut(s) 419, 1158
AfiI CCNNNNNNNGG 7 cut(s) 215, 469, 530, 809, 842, 979, 1427
AflII CTTAAG 1 cut(s) 250
AgsI TTSAA 7 cut(s) 310, 452, 521, 826, 940, 1022, 1028
AjnI CCWGG 5 cut(s) 406, 474, 1062, 1183, 1426
AleI CACNNNNGTG 2 cut(s) 714, 1272
AluBI AGCT 8 cut(s) 20, 68, 165, 322, 448, 542, 1321, 1403
AluI AGCT 8 cut(s) 20, 68, 165, 322, 448, 542, 1321, 1403
Alw21I GWGCWC 3 cut(s) 438, 1105, 1177
Alw26I GTCTC 3 cut(s) 383, 795, 991
AlwI GGATC 2 cut(s) 827, 840
Ama87I CYCGRG 4 cut(s) 636, 883, 1104, 1309
AoxI GGCC 4 cut(s) 179, 471, 621, 922
ApaI GGGCCC 1 cut(s) 475
ApeKI GCWGC 5 cut(s) 20, 43, 65, 677, 728
ApoI RAATTY 6 cut(s) 212, 337, 959, 1116, 1150, 1355
Asp700I GAANNNNTTC 1 cut(s) 1241
AspS9I GGNCC 6 cut(s) 471, 472, 621, 800, 899, 922
AsuC2I CCSGG 5 cut(s) 884, 885, 1161, 1310, 1311
AsuHPI GGTGA 2 cut(s) 479, 1175
AvaI CYCGRG 4 cut(s) 636, 883, 1104, 1309
AvaII GGWCC 2 cut(s) 800, 899
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 475
BaeI ACNNNNGTAYC 2 cut(s) 409, 442
BamHI GGATCC 1 cut(s) 832
BanII GRGCYC 3 cut(s) 475, 1003, 1316
BauI CACGAG 2 cut(s) 1221, 1268
Bbv12I GWGCWC 3 cut(s) 438, 1105, 1177
BbvI GCAGC 5 cut(s) 7, 55, 77, 664, 715
BccI CCATC 5 cut(s) 190, 488, 691, 872, 1091
BciT130I CCWGG 5 cut(s) 408, 476, 1064, 1185, 1428
BcnI CCSGG 5 cut(s) 884, 885, 1161, 1310, 1311
BcoDI GTCTC 3 cut(s) 383, 795, 991
BfaI CTAG 2 cut(s) 138, 491
BfmI CTRYAG 3 cut(s) 21, 954, 1254
BfrI CTTAAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 1216
BglI GCCNNNNNGGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 140
BisI GCNGC 6 cut(s) 21, 44, 66, 302, 678, 729
BlsI GCNGC 6 cut(s) 22, 45, 67, 303, 679, 730
Bme18I GGWCC 2 cut(s) 800, 899
BmeT110I CYCGRG 4 cut(s) 636, 883, 1104, 1309
BmgT120I GGNCC 6 cut(s) 471, 472, 621, 800, 899, 922
BmiI GGNNCC 5 cut(s) 473, 622, 801, 834, 923
BmsI GCATC 5 cut(s) 469, 664, 1206, 1282, 1413
BoxI GACNNNNGTC 1 cut(s) 1394
BpmI CTGGAG 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 338
BpuMI CCSGG 5 cut(s) 884, 885, 1161, 1310, 1311
BsaHI GRCGYC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 991
BsaJI CCNNGG 6 cut(s) 157, 407, 474, 883, 1308, 1309
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 7 cut(s) 215, 469, 530, 809, 842, 979, 1427
Bse1I ACTGG 3 cut(s) 624, 836, 1041
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 5 cut(s) 408, 476, 1064, 1185, 1428
BseDI CCNNGG 6 cut(s) 157, 407, 474, 883, 1308, 1309
BseGI GGATG 4 cut(s) 153, 182, 484, 679
BseLI CCNNNNNNNGG 7 cut(s) 215, 469, 530, 809, 842, 979, 1427
BseMII CTCAG 4 cut(s) 258, 345, 962, 1224
BseNI ACTGG 3 cut(s) 624, 836, 1041
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 5 cut(s) 7, 55, 77, 664, 715
BseYI CCCAGC 1 cut(s) 173
BshFI GGCC 4 cut(s) 181, 473, 623, 924
BsiHKAI GWGCWC 3 cut(s) 438, 1105, 1177
BsiHKCI CYCGRG 4 cut(s) 636, 883, 1104, 1309
BsiSI CCGG 4 cut(s) 191, 884, 1161, 1310
BslFI GGGAC 1 cut(s) 1068
BslI CCNNNNNNNGG 7 cut(s) 215, 469, 530, 809, 842, 979, 1427
BsmAI GTCTC 3 cut(s) 383, 795, 991
BsmFI GGGAC 1 cut(s) 1068
BsnI GGCC 4 cut(s) 181, 473, 623, 924
Bso31I GGTCTC 1 cut(s) 991
BsoBI CYCGRG 4 cut(s) 636, 883, 1104, 1309
Bsp120I GGGCCC 1 cut(s) 471
Bsp1286I GDGCHC 6 cut(s) 438, 475, 1003, 1105, 1177, 1316
Bsp143I GATC 5 cut(s) 140, 580, 832, 1075, 1369
BspACI CCGC 4 cut(s) 301, 671, 1279, 1387
BspANI GGCC 4 cut(s) 181, 473, 623, 924
BspCNI CTCAG 4 cut(s) 259, 344, 961, 1225
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 5 cut(s) 473, 622, 801, 834, 923
BspMAI CTGCAG 3 cut(s) 25, 958, 1258
BspMI ACCTGC 1 cut(s) 1216
BspPI GGATC 2 cut(s) 827, 840
BspTI CTTAAG 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 991
BsrBI CCGCTC 1 cut(s) 301
BsrI ACTGG 3 cut(s) 624, 836, 1041
BssECI CCNNGG 6 cut(s) 157, 407, 474, 883, 1308, 1309
BssMI GATC 5 cut(s) 140, 580, 832, 1075, 1369
BssNI GRCGYC 1 cut(s) 510
BssSI CACGAG 2 cut(s) 1221, 1268
BssT1I CCWWGG 1 cut(s) 157
Bst2BI CACGAG 2 cut(s) 1221, 1268
Bst2UI CCWGG 5 cut(s) 408, 476, 1064, 1185, 1428
Bst4CI ACNGT 1 cut(s) 761
BstACI GRCGYC 1 cut(s) 510
BstAFI CTTAAG 1 cut(s) 250
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 5 cut(s) 6, 10, 276, 945, 1009
BstDEI CTNAG 7 cut(s) 56, 86, 267, 331, 794, 948, 1233
BstF5I GGATG 4 cut(s) 153, 182, 484, 679
BstKTI GATC 5 cut(s) 143, 583, 835, 1078, 1372
BstMAI GTCTC 3 cut(s) 383, 795, 991
BstMBI GATC 5 cut(s) 140, 580, 832, 1075, 1369
BstMWI GCNNNNNNNGC 7 cut(s) 52, 134, 479, 677, 683, 953, 1292
BstNI CCWGG 5 cut(s) 408, 476, 1064, 1185, 1428
BstNSI RCATGY 3 cut(s) 206, 947, 1343
BstPAI GACNNNNGTC 1 cut(s) 1394
BstSFI CTRYAG 3 cut(s) 21, 954, 1254
BstSLI GKGCMC 1 cut(s) 475
BstV1I GCAGC 5 cut(s) 7, 55, 77, 664, 715
BstX2I RGATCY 2 cut(s) 140, 832
BstXI CCANNNNNNTGG 1 cut(s) 917
BstYI RGATCY 2 cut(s) 140, 832
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 4 cut(s) 181, 473, 623, 924
BtsCI GGATG 4 cut(s) 153, 182, 484, 679
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 5 cut(s) 19, 204, 631, 1034, 1230
BveI ACCTGC 1 cut(s) 1216
Cac8I GCNNGC 5 cut(s) 6, 10, 276, 945, 1009
CciI TCATGA 1 cut(s) 577
Cfr13I GGNCC 6 cut(s) 471, 472, 621, 800, 899, 922
Cfr9I CCCGGG 2 cut(s) 883, 1309
CseI GACGC 2 cut(s) 499, 1070
CsiI ACCWGGT 1 cut(s) 1062
Csp6I GTAC 2 cut(s) 418, 1157
CviAII CATG 9 cut(s) 51, 203, 375, 578, 589, 658, 944, 1126, 1340
CviQI GTAC 2 cut(s) 418, 1157
DdeI CTNAG 7 cut(s) 56, 86, 267, 331, 794, 948, 1233
DpnI GATC 5 cut(s) 142, 582, 834, 1077, 1371
DpnII GATC 5 cut(s) 140, 580, 832, 1075, 1369
DraI TTTAAA 1 cut(s) 1335
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 3 cut(s) 475, 1003, 1316
Eco31I GGTCTC 1 cut(s) 991
Eco47I GGWCC 2 cut(s) 800, 899
Eco57I CTGAAG 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 4 cut(s) 636, 883, 1104, 1309
EcoO109I RGGNCCY 3 cut(s) 471, 472, 922
EcoRI GAATTC 2 cut(s) 1150, 1355
EcoRII CCWGG 5 cut(s) 406, 474, 1062, 1183, 1426
EcoT14I CCWWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 484
EcoT38I GRGCYC 3 cut(s) 475, 1003, 1316
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 9 cut(s) 54, 206, 378, 581, 592, 661, 947, 1129, 1343
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 1 cut(s) 1068
FatI CATG 9 cut(s) 50, 202, 374, 577, 588, 657, 943, 1125, 1339
Fnu4HI GCNGC 6 cut(s) 21, 44, 66, 302, 678, 729
FokI GGATG 4 cut(s) 140, 169, 491, 686
FriOI GRGCYC 3 cut(s) 475, 1003, 1316
Fsp4HI GCNGC 6 cut(s) 21, 44, 66, 302, 678, 729
FspBI CTAG 2 cut(s) 138, 491
GluI GCNGC 6 cut(s) 21, 44, 66, 302, 678, 729
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 522
HaeIII GGCC 4 cut(s) 181, 473, 623, 924
HapII CCGG 4 cut(s) 191, 884, 1161, 1310
HgaI GACGC 2 cut(s) 499, 1070
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 9 cut(s) 54, 206, 378, 581, 592, 661, 947, 1129, 1343
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 976, 1227
HpaII CCGG 4 cut(s) 191, 884, 1161, 1310
HphI GGTGA 2 cut(s) 479, 1175
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 334, 397, 1202, 1381
Hpy188III TCNNGA 6 cut(s) 578, 638, 826, 1121, 1268, 1420
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 392, 823
HpyCH4III ACNGT 1 cut(s) 761
HpyF10VI GCNNNNNNNGC 7 cut(s) 52, 134, 479, 677, 683, 953, 1292
HpyF3I CTNAG 7 cut(s) 56, 86, 267, 331, 794, 948, 1233
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 9 cut(s) 54, 206, 378, 581, 592, 661, 947, 1129, 1343
Kzo9I GATC 5 cut(s) 140, 580, 832, 1075, 1369
LmnI GCTCC 3 cut(s) 17, 62, 1326
Lsp1109I GCAGC 5 cut(s) 7, 55, 77, 664, 715
LweI GCATC 5 cut(s) 469, 664, 1206, 1282, 1413
MabI ACCWGGT 1 cut(s) 1062
MaeI CTAG 2 cut(s) 138, 491
MaeIII GTNAC 1 cut(s) 769
MalI GATC 5 cut(s) 142, 582, 834, 1077, 1371
MbiI CCGCTC 1 cut(s) 301
MboI GATC 5 cut(s) 140, 580, 832, 1075, 1369
MboII GAAGA 2 cut(s) 676, 814
MflI RGATCY 2 cut(s) 140, 832
MhlI GDGCHC 6 cut(s) 438, 475, 1003, 1105, 1177, 1316
Mph1103I ATGCAT 1 cut(s) 484
MroXI GAANNNNTTC 1 cut(s) 1241
MseI TTAA 5 cut(s) 120, 251, 963, 1143, 1334
MslI CAYNNNNRTG 4 cut(s) 441, 492, 714, 1272
MspCI CTTAAG 1 cut(s) 250
MspI CCGG 4 cut(s) 191, 884, 1161, 1310
MvaI CCWGG 5 cut(s) 408, 476, 1064, 1185, 1428
MwoI GCNNNNNNNGC 7 cut(s) 52, 134, 479, 677, 683, 953, 1292
NciI CCSGG 5 cut(s) 884, 885, 1161, 1310, 1311
NdeII GATC 5 cut(s) 140, 580, 832, 1075, 1369
NlaIII CATG 9 cut(s) 54, 206, 378, 581, 592, 661, 947, 1129, 1343
NlaIV GGNNCC 5 cut(s) 473, 622, 801, 834, 923
NmuCI GTSAC 1 cut(s) 769
NsiI ATGCAT 1 cut(s) 484
NspI RCATGY 3 cut(s) 206, 947, 1343
OliI CACNNNNGTG 2 cut(s) 714, 1272
PaeI GCATGC 1 cut(s) 947
PaeR7I CTCGAG 1 cut(s) 636
PagI TCATGA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 1241
PfeI GAWTC 2 cut(s) 976, 1227
PflMI CCANNNNNTGG 3 cut(s) 530, 809, 842
PkrI GCNGC 6 cut(s) 22, 45, 67, 303, 679, 730
PshAI GACNNNNGTC 1 cut(s) 1394
Psp6I CCWGG 5 cut(s) 406, 474, 1062, 1183, 1426
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 5 cut(s) 406, 474, 1062, 1183, 1426
PspN4I GGNNCC 5 cut(s) 473, 622, 801, 834, 923
PspOMI GGGCCC 1 cut(s) 471
PspPI GGNCC 6 cut(s) 471, 472, 621, 800, 899, 922
PstI CTGCAG 3 cut(s) 25, 958, 1258
PsuI RGATCY 2 cut(s) 140, 832
RsaI GTAC 2 cut(s) 419, 1158
RsaNI GTAC 2 cut(s) 418, 1157
RseI CAYNNNNRTG 4 cut(s) 441, 492, 714, 1272
SaqAI TTAA 5 cut(s) 120, 251, 963, 1143, 1334
SatI GCNGC 6 cut(s) 21, 44, 66, 302, 678, 729
Sau3AI GATC 5 cut(s) 140, 580, 832, 1075, 1369
Sau96I GGNCC 6 cut(s) 471, 472, 621, 800, 899, 922
SduI GDGCHC 6 cut(s) 438, 475, 1003, 1105, 1177, 1316
SexAI ACCWGGT 1 cut(s) 1062
SfaNI GCATC 5 cut(s) 469, 664, 1206, 1282, 1413
SfcI CTRYAG 3 cut(s) 21, 954, 1254
Sfr274I CTCGAG 1 cut(s) 636
SinI GGWCC 2 cut(s) 800, 899
SlaI CTCGAG 1 cut(s) 636
SmaI CCCGGG 2 cut(s) 885, 1311
SmiMI CAYNNNNRTG 4 cut(s) 441, 492, 714, 1272
SmlI CTYRAG 3 cut(s) 250, 317, 636
SmoI CTYRAG 3 cut(s) 250, 317, 636
SphI GCATGC 1 cut(s) 947
SsiI CCGC 4 cut(s) 301, 671, 1279, 1387
SspMI CTAG 2 cut(s) 138, 491
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 761
TaqI TCGA 5 cut(s) 549, 637, 1074, 1372, 1398
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 2 cut(s) 976, 1227
Tru1I TTAA 5 cut(s) 120, 251, 963, 1143, 1334
Tru9I TTAA 5 cut(s) 120, 251, 963, 1143, 1334
TscAI CASTG 5 cut(s) 19, 204, 631, 1041, 1237
TseFI GTSAC 1 cut(s) 769
TseI GCWGC 5 cut(s) 20, 43, 65, 677, 728
Tsp45I GTSAC 1 cut(s) 769
TspDTI ATGAA 1 cut(s) 1234
TspMI CCCGGG 2 cut(s) 883, 1309
TspRI CASTG 5 cut(s) 19, 204, 631, 1041, 1237
Van91I CCANNNNNTGG 3 cut(s) 530, 809, 842
Vha464I CTTAAG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 800, 899
XapI RAATTY 6 cut(s) 212, 337, 959, 1116, 1150, 1355
XceI RCATGY 3 cut(s) 206, 947, 1343
XhoI CTCGAG 1 cut(s) 636
XmaI CCCGGG 2 cut(s) 883, 1309
XmnI GAANNNNTTC 1 cut(s) 1241
XspI CTAG 2 cut(s) 138, 491
Zsp2I ATGCAT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.