AT4G32960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015119
Physical Location & Seq
Reverse (-)
15908572 .. 15910292
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32960.1

Sequence Viewer

Length: 795 bp
ATGGAGGAAGAGAGAGTGGCCGTGACCGGAGTAGGAACGACTCGATACGCGCTTAAACCGGGGCGTATAAAAAGCGAGGACATACTCATCTGTATCGATGTAGATGCAGAATCGATGGTGGAGATGAAGACCACTGGAACTAATGGTAGGCCTTTGATCAGGATGGAGTGCGTCAAGCAAGCCATTATTCTCTTCATTCACAATAAGCTGTCCATTAATCCTGATCATCGCTTTGCTTTCGCTACGCTCGCCAAATCAGCCGCTTGGCTTAAAAAGGAGTTCACAAGTGATGCTGAATCTGCTGTTGCTTCCCTTAGAGGATTGTCAGGTAATAAATCCTCTAGTCGAGCGGATCTCACACTTCTCTTCCGAGCAGCAGCTCAGGAAGCCAAAGTTTCCAGAGCACAGAACCGAATTTTCAGGGTGATTCTCATATACTGTAGGTCATCTATGAGACCAACCCATGAGTGGCCCTTAAACCAGAAGCTCTTCACGTTGGATGTTATGTACCTGCACGACAAGCCAAGTCCTGATAATTGTCCACAAGATGTGTATGACTCTCTTGTCGATGCAGTAGAACATGTTTCAGAGTATGAAGGTTACATATTTGAGAGCGGTCAAGGGCTTGCACGGTCTGTTTTCAAGCCAATGTCAATGCTGTTAACTCATCCTCAACAAAGATGTGCTCAAGATGATCTTGACATCCCCATGTCTCTTGCAAAGAAAGTGCCTGTGACTGAGGCGGCAAGTGCTGTAGATCCTCACAATGGGAACAATATTCAGATCATAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.42

Weight (kDa)

6.66

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32960
fragaria_vesca FvH4_2g32160 FvH4_2g32160
malus_domestica MD08G1073300.v1.1
prunus_persica Prupe.1G414700_v2.0.a1 Prupe.6G150100_v2.0.a1
pyrus_communis pycom08g06070
rosa_chinensis RchiOBHm_Chr6g0310521
rosa_laevigata RLG00000010476
rosa_roxburghii Rroxscaffold_7G00158460
rosa_rugosa Rorug06G0381200
rosa_samantha Rh6AG495100 Rh6BG504700 Rh6CG510000 Rh6DG496000
rosa_wichuraiana Rw6G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
Acc36I ACCTGC 1 cut(s) 519
AccBSI CCGCTC 2 cut(s) 350, 615
AccII CGCG 1 cut(s) 50
AciI CCGC 4 cut(s) 261, 350, 615, 743
AclWI GGATC 2 cut(s) 360, 752
AcoI YGGCCR 1 cut(s) 18
AcsI RAATTY 1 cut(s) 414
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 2 cut(s) 468, 767
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 1 cut(s) 643
AluBI AGCT 3 cut(s) 208, 380, 487
AluI AGCT 3 cut(s) 208, 380, 487
Alw21I GWGCWC 2 cut(s) 406, 688
Alw26I GTCTC 2 cut(s) 448, 717
AlwI GGATC 2 cut(s) 360, 752
AoxI GGCC 3 cut(s) 18, 149, 470
ApeKI GCWGC 2 cut(s) 374, 377
ApoI RAATTY 1 cut(s) 414
AseI ATTAAT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 471
AsuC2I CCSGG 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 2 cut(s) 406, 688
BbvI GCAGC 2 cut(s) 386, 389
BccI CCATC 2 cut(s) 109, 157
BceAI ACGGC 1 cut(s) 5
BcgI CGANNNNNNTGC 2 cut(s) 86, 120
BclI TGATCA 2 cut(s) 156, 223
BcnI CCSGG 1 cut(s) 60
BcoDI GTCTC 2 cut(s) 448, 717
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 2 cut(s) 439, 753
BfuAI ACCTGC 1 cut(s) 519
BisI GCNGC 4 cut(s) 261, 375, 378, 744
BlsI GCNGC 4 cut(s) 262, 376, 379, 745
Bme1390I CCNGG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 471
BmrFI CCNGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 94, 280, 559
BpiI GAAGAC 1 cut(s) 134
BplI GAGNNNNNCTC 2 cut(s) 339, 371
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 672
BpuMI CCSGG 1 cut(s) 60
Bsa29I ATCGAT 2 cut(s) 96, 113
BsaI GGTCTC 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 468, 767
Bse1I ACTGG 1 cut(s) 139
BseCI ATCGAT 2 cut(s) 96, 113
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 4 cut(s) 168, 505, 667, 702
BseLI CCNNNNNNNGG 2 cut(s) 468, 767
BseMII CTCAG 2 cut(s) 395, 729
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 2 cut(s) 386, 389
BsgI GTGCAG 1 cut(s) 497
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 3 cut(s) 20, 151, 472
BshVI ATCGAT 2 cut(s) 96, 113
BsiHKAI GWGCWC 2 cut(s) 406, 688
BsiSI CCGG 2 cut(s) 27, 59
BslI CCNNNNNNNGG 2 cut(s) 468, 767
BsmAI GTCTC 2 cut(s) 448, 717
BsnI GGCC 3 cut(s) 20, 151, 472
Bso31I GGTCTC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 406, 688
Bsp143I GATC 6 cut(s) 156, 223, 352, 694, 757, 783
BspACI CCGC 4 cut(s) 261, 350, 615, 743
BspANI GGCC 3 cut(s) 20, 151, 472
BspCNI CTCAG 2 cut(s) 394, 730
BspDI ATCGAT 2 cut(s) 96, 113
BspFNI CGCG 1 cut(s) 50
BspMI ACCTGC 1 cut(s) 519
BspPI GGATC 2 cut(s) 360, 752
BspQI GCTCTTC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 448
BsrBI CCGCTC 2 cut(s) 350, 615
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 6 cut(s) 156, 223, 352, 694, 757, 783
Bst4CI ACNGT 2 cut(s) 440, 633
Bst6I CTCTTC 4 cut(s) 3, 197, 371, 494
BstC8I GCNNGC 3 cut(s) 180, 249, 627
BstDEI CTNAG 3 cut(s) 314, 381, 738
BstF5I GGATG 4 cut(s) 168, 505, 667, 702
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 6 cut(s) 159, 226, 355, 697, 760, 786
BstMAI GTCTC 2 cut(s) 448, 717
BstMBI GATC 6 cut(s) 156, 223, 352, 694, 757, 783
BstMWI GCNNNNNNNGC 6 cut(s) 248, 257, 299, 386, 520, 749
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 2 cut(s) 439, 753
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 2 cut(s) 386, 389
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 2 cut(s) 352, 757
BstYI RGATCY 2 cut(s) 352, 757
Bsu15I ATCGAT 2 cut(s) 96, 113
BsuRI GGCC 3 cut(s) 20, 151, 472
BsuTUI ATCGAT 2 cut(s) 96, 113
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 4 cut(s) 168, 505, 667, 702
BtsIMutI CAGTG 1 cut(s) 132
BveI ACCTGC 1 cut(s) 519
Cac8I GCNNGC 3 cut(s) 180, 249, 627
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 471
ClaI ATCGAT 2 cut(s) 96, 113
CseI GACGC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 508
CviAII CATG 3 cut(s) 464, 581, 709
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 314, 381, 738
DpnI GATC 6 cut(s) 158, 225, 354, 696, 759, 785
DpnII GATC 6 cut(s) 156, 223, 352, 694, 757, 783
DrdI GACNNNNNNGTC 1 cut(s) 563
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 1 cut(s) 18
Eam1104I CTCTTC 4 cut(s) 3, 197, 371, 494
EarI CTCTTC 4 cut(s) 3, 197, 371, 494
Eco147I AGGCCT 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 448
FaeI CATG 3 cut(s) 467, 584, 712
FalI AAGNNNNNCTT 2 cut(s) 681, 713
FatI CATG 3 cut(s) 463, 580, 708
FbaI TGATCA 2 cut(s) 156, 223
Fnu4HI GCNGC 4 cut(s) 261, 375, 378, 744
FokI GGATG 4 cut(s) 175, 512, 654, 689
Fsp4HI GCNGC 4 cut(s) 261, 375, 378, 744
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 51
GluI GCNGC 4 cut(s) 261, 375, 378, 744
HaeIII GGCC 3 cut(s) 20, 151, 472
HapII CCGG 2 cut(s) 27, 59
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 52
Hin1II CATG 3 cut(s) 467, 584, 712
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 5 cut(s) 40, 110, 296, 427, 557
HpaI GTTAAC 1 cut(s) 663
HpaII CCGG 2 cut(s) 27, 59
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 3 cut(s) 282, 542, 663
Hpy188I TCNGA 3 cut(s) 371, 589, 783
Hpy188III TCNNGA 7 cut(s) 160, 221, 383, 399, 530, 689, 698
Hpy8I GTNNAC 3 cut(s) 282, 542, 663
HpyAV CCTTC 1 cut(s) 590
HpyCH4III ACNGT 2 cut(s) 440, 633
HpyCH4IV ACGT 1 cut(s) 494
HpyCH4V TGCA 5 cut(s) 107, 514, 572, 629, 719
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 257, 299, 386, 520, 749
HpyF3I CTNAG 3 cut(s) 314, 381, 738
HpySE526I ACGT 1 cut(s) 494
Hsp92II CATG 3 cut(s) 467, 584, 712
HspAI GCGC 1 cut(s) 50
Ksp22I TGATCA 2 cut(s) 156, 223
KspAI GTTAAC 1 cut(s) 663
Kzo9I GATC 6 cut(s) 156, 223, 352, 694, 757, 783
LguI GCTCTTC 1 cut(s) 494
Lsp1109I GCAGC 2 cut(s) 386, 389
LweI GCATC 3 cut(s) 94, 280, 559
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 494
MaeIII GTNAC 3 cut(s) 22, 599, 733
MalI GATC 6 cut(s) 158, 225, 354, 696, 759, 785
MbiI CCGCTC 2 cut(s) 350, 615
MboI GATC 6 cut(s) 156, 223, 352, 694, 757, 783
MboII GAAGA 5 cut(s) 20, 139, 184, 358, 481
MflI RGATCY 2 cut(s) 352, 757
MhlI GDGCHC 2 cut(s) 406, 688
MluCI AATT 2 cut(s) 414, 535
MlyI GAGTC 2 cut(s) 34, 551
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 6 cut(s) 70, 311, 349, 681, 733, 771
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 5 cut(s) 54, 216, 270, 476, 662
MslI CAYNNNNRTG 1 cut(s) 707
MspI CCGG 2 cut(s) 27, 59
MspR9I CCNGG 1 cut(s) 60
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 6 cut(s) 248, 257, 299, 386, 520, 749
NciI CCSGG 1 cut(s) 60
NdeII GATC 6 cut(s) 156, 223, 352, 694, 757, 783
NlaIII CATG 3 cut(s) 467, 584, 712
NmuCI GTSAC 2 cut(s) 22, 733
NspI RCATGY 1 cut(s) 584
PceI AGGCCT 1 cut(s) 151
PciI ACATGT 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 3 cut(s) 110, 296, 427
PkrI GCNGC 4 cut(s) 262, 376, 379, 745
PleI GAGTC 2 cut(s) 34, 551
PpsI GAGTC 2 cut(s) 34, 551
PscI ACATGT 1 cut(s) 580
PshBI ATTAAT 1 cut(s) 216
PspPI GGNCC 1 cut(s) 471
PsuI RGATCY 2 cut(s) 352, 757
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 494
SaqAI TTAA 5 cut(s) 54, 216, 270, 476, 662
SatI GCNGC 4 cut(s) 261, 375, 378, 744
Sau3AI GATC 6 cut(s) 156, 223, 352, 694, 757, 783
Sau96I GGNCC 1 cut(s) 471
SchI GAGTC 2 cut(s) 34, 551
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 2 cut(s) 406, 688
SetI ASST 8 cut(s) 210, 331, 382, 446, 489, 497, 513, 601
SfaNI GCATC 3 cut(s) 94, 280, 559
SfcI CTRYAG 2 cut(s) 439, 753
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 687
SmoI CTYRAG 1 cut(s) 687
Sse9I AATT 2 cut(s) 414, 535
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 4 cut(s) 261, 350, 615, 743
SspI AATATT 1 cut(s) 778
SspMI CTAG 1 cut(s) 342
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 440, 633
TaiI ACGT 1 cut(s) 497
TaqI TCGA 5 cut(s) 43, 96, 113, 346, 567
TasI AATT 2 cut(s) 414, 535
TauI GCSGC 2 cut(s) 263, 746
TfiI GAWTC 3 cut(s) 110, 296, 427
Tru1I TTAA 5 cut(s) 54, 216, 270, 476, 662
Tru9I TTAA 5 cut(s) 54, 216, 270, 476, 662
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 2 cut(s) 22, 733
TseI GCWGC 2 cut(s) 374, 377
Tsp45I GTSAC 2 cut(s) 22, 733
TspDTI ATGAA 3 cut(s) 140, 184, 609
TspRI CASTG 1 cut(s) 139
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.