Rorug06G0381200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015119
Physical Location & Seq
Forward (+)
52711698 .. 52712491
794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0381200.1

Sequence Viewer

Length: 684 bp
ATGGTGCAACCTGAGATCCCTCTGATCTATGAGAAAGTCAAGGGATTCTATAGGGATTGTGGCTTGTTTGAGCATGATGCGACGGGCTGTGACAAATTTCTGGTGAAAGAGAAAGAAGAGCTCCAGAATGGGCGCCGGAAGCGGCGATGGCCGCATGAGGAAACTGTGGTGGACGGCAATCTGCATGGCTCCAATTTTGTTGGAGATGTGGAAGGCCATGTGGCACAGGGAGGTGAAGGGTTGTATGTTTCTAAGTCTGCTGGAAATGCAATCTGTAGGCCACAAAGCTTGGTTGAAAATAGTGGTGTAGGCCGGTTTAAGAATTGGGAGGGTTTGATACTAGATTGGTCCACGACCAAGATGCTACCTGTGCAAGGTTTGCCTAAGGTGAAGAAAGCAATTCTGAAGCCGGGACCGAATTTAGGGTCGTCTAGTCTGGCTGTAGTGGGAACAAAAAGAAGATCGAGCTATGATCTGCTTAATGCCGATAAACGGTTTTTGTCACTTCCAGCTCCTGCTCTCAAGGTGGATGAAAACATAACATCAATGCTGCAGCACAAACATGGTAAGATTATTATCTCACCAAAGAAGAAGAAGTTGGGGTGTCCGCGTGGGAGTAAGAATAAACCCAAGACTGCTAGGGTTTTGGAGCTGGAGTTGCAGGAGAGAAAACCTCTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.24

Weight (kDa)

9.71

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32960
fragaria_vesca FvH4_2g32160 FvH4_2g32160
malus_domestica MD08G1073300.v1.1
prunus_persica Prupe.1G414700_v2.0.a1 Prupe.6G150100_v2.0.a1
pyrus_communis pycom08g06070
rosa_chinensis RchiOBHm_Chr6g0310521
rosa_laevigata RLG00000010476
rosa_roxburghii Rroxscaffold_7G00158460
rosa_rugosa Rorug06G0381200
rosa_samantha Rh6AG495100 Rh6BG504700 Rh6CG510000 Rh6DG496000
rosa_wichuraiana Rw6G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccII CGCG 1 cut(s) 610
AciI CCGC 3 cut(s) 142, 152, 608
AclWI GGATC 1 cut(s) 10
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 2 cut(s) 95, 418
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 133
AfiI CCNNNNNNNGG 3 cut(s) 374, 422, 492
AgsI TTSAA 1 cut(s) 296
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 5 cut(s) 121, 288, 468, 512, 652
AluI AGCT 5 cut(s) 121, 288, 468, 512, 652
Alw21I GWGCWC 1 cut(s) 123
AlwI GGATC 1 cut(s) 10
AlwNI CAGNNNCTG 1 cut(s) 515
AoxI GGCC 4 cut(s) 149, 214, 278, 310
ApeKI GCWGC 2 cut(s) 550, 553
ApoI RAATTY 2 cut(s) 95, 418
ArsI GACNNNNNNTTYG 2 cut(s) 410, 442
AspLEI GCGC 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 348, 413
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 4 cut(s) 115, 245, 400, 573
AvaII GGWCC 2 cut(s) 348, 413
AxyI CCTNAGG 1 cut(s) 384
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 537, 565
BccI CCATC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BcnI CCSGG 1 cut(s) 411
BfaI CTAG 3 cut(s) 341, 432, 639
BfmI CTRYAG 4 cut(s) 49, 274, 441, 551
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 4 cut(s) 143, 152, 551, 554
BlsI GCNGC 4 cut(s) 144, 153, 552, 555
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 2 cut(s) 348, 413
BmgT120I GGNCC 2 cut(s) 348, 413
BmiI GGNNCC 3 cut(s) 134, 190, 414
BmrFI CCNGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 67, 351
BplI GAGNNNNNCTC 1 cut(s) 658
BpmI CTGGAG 2 cut(s) 107, 674
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 422, 492
Bse118I RCCGGY 1 cut(s) 312
Bse21I CCTNAGG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 575
BseGI GGATG 1 cut(s) 535
BseJI GATNNNNATC 1 cut(s) 575
BseLI CCNNNNNNNGG 3 cut(s) 374, 422, 492
BseXI GCAGC 2 cut(s) 537, 565
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 4 cut(s) 151, 216, 280, 312
BshNI GGYRCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 3 cut(s) 136, 313, 410
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 3 cut(s) 374, 422, 492
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 4 cut(s) 151, 216, 280, 312
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 4 cut(s) 15, 24, 461, 472
BspACI CCGC 3 cut(s) 142, 152, 608
BspANI GGCC 4 cut(s) 151, 216, 280, 312
BspCNI CTCAG 1 cut(s) 4
BspFNI CGCG 1 cut(s) 610
BspLI GGNNCC 3 cut(s) 134, 190, 414
BspMAI CTGCAG 1 cut(s) 555
BspPI GGATC 1 cut(s) 10
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 312
BssAI RCCGGY 1 cut(s) 312
BssMI GATC 4 cut(s) 15, 24, 461, 472
BssNI GRCGYC 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 166, 495
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 379
BstDEI CTNAG 3 cut(s) 12, 252, 384
BstENI CCTNNNNNAGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 535
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 4 cut(s) 18, 27, 464, 475
BstMBI GATC 4 cut(s) 15, 24, 461, 472
BstMWI GCNNNNNNNGC 7 cut(s) 139, 148, 151, 266, 370, 379, 658
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 4 cut(s) 49, 274, 441, 551
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 2 cut(s) 537, 565
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 4 cut(s) 151, 216, 280, 312
BtgZI GCGATG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 535
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 348, 413
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 5 cut(s) 74, 155, 185, 218, 563
DdeI CTNAG 3 cut(s) 12, 252, 384
DinI GGCGCC 1 cut(s) 134
DpnI GATC 4 cut(s) 17, 26, 463, 474
DpnII GATC 4 cut(s) 15, 24, 461, 472
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 348, 413
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 425
Eco81I CCTNAGG 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 123
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
FaeI CATG 5 cut(s) 77, 158, 188, 221, 566
FaqI GGGAC 1 cut(s) 426
FatI CATG 5 cut(s) 73, 154, 184, 217, 562
Fnu4HI GCNGC 4 cut(s) 143, 152, 551, 554
FokI GGATG 1 cut(s) 542
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 143, 152, 551, 554
FspBI CTAG 3 cut(s) 341, 432, 639
GlaI GCGC 1 cut(s) 134
GluI GCNGC 4 cut(s) 143, 152, 551, 554
GsuI CTGGAG 2 cut(s) 107, 674
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 4 cut(s) 151, 216, 280, 312
HapII CCGG 3 cut(s) 136, 313, 410
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 5 cut(s) 77, 158, 188, 221, 566
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 1 cut(s) 45
HpaII CCGG 3 cut(s) 136, 313, 410
HphI GGTGA 4 cut(s) 115, 245, 400, 573
Hpy166II GTNNAC 2 cut(s) 172, 351
Hpy188I TCNGA 3 cut(s) 24, 405, 678
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 2 cut(s) 172, 351
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 206, 230
HpyCH4III ACNGT 2 cut(s) 166, 495
HpyCH4V TGCA 6 cut(s) 7, 184, 269, 373, 553, 661
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 148, 151, 266, 370, 379, 658
HpyF3I CTNAG 3 cut(s) 12, 252, 384
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 5 cut(s) 77, 158, 188, 221, 566
HspAI GCGC 1 cut(s) 133
KasI GGCGCC 1 cut(s) 132
Kzo9I GATC 4 cut(s) 15, 24, 461, 472
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 4 cut(s) 126, 194, 517, 649
Lsp1109I GCAGC 2 cut(s) 537, 565
LweI GCATC 2 cut(s) 67, 351
MaeI CTAG 3 cut(s) 341, 432, 639
MaeIII GTNAC 2 cut(s) 89, 501
MalI GATC 4 cut(s) 17, 26, 463, 474
MboI GATC 4 cut(s) 15, 24, 461, 472
MboII GAAGA 5 cut(s) 128, 403, 471, 601, 604
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 5 cut(s) 95, 193, 322, 399, 418
Mly113I GGCGCC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 5 cut(s) 30, 151, 224, 322, 684
MseI TTAA 2 cut(s) 318, 480
MslI CAYNNNNRTG 1 cut(s) 561
MspI CCGG 3 cut(s) 136, 313, 410
MspR9I CCNGG 1 cut(s) 411
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 7 cut(s) 139, 148, 151, 266, 370, 379, 658
NarI GGCGCC 1 cut(s) 133
NciI CCSGG 1 cut(s) 411
NdeII GATC 4 cut(s) 15, 24, 461, 472
NlaIII CATG 5 cut(s) 77, 158, 188, 221, 566
NlaIV GGNNCC 3 cut(s) 134, 190, 414
NmuCI GTSAC 2 cut(s) 89, 501
PciSI GCTCTTC 1 cut(s) 111
PfeI GAWTC 1 cut(s) 45
PkrI GCNGC 4 cut(s) 144, 153, 552, 555
PluTI GGCGCC 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 134, 190, 414
PspPI GGNCC 2 cut(s) 348, 413
PstI CTGCAG 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 561
SacI GAGCTC 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 318, 480
SatI GCNGC 4 cut(s) 143, 152, 551, 554
Sau3AI GATC 4 cut(s) 15, 24, 461, 472
Sau96I GGNCC 2 cut(s) 348, 413
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 1 cut(s) 123
SfaNI GCATC 2 cut(s) 67, 351
SfcI CTRYAG 4 cut(s) 49, 274, 441, 551
SfoI GGCGCC 1 cut(s) 134
SinI GGWCC 2 cut(s) 348, 413
SmiMI CAYNNNNRTG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 5 cut(s) 95, 193, 322, 399, 418
SsiI CCGC 3 cut(s) 142, 152, 608
SspDI GGCGCC 1 cut(s) 132
SspMI CTAG 3 cut(s) 341, 432, 639
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 2 cut(s) 166, 495
TaqI TCGA 1 cut(s) 464
TaqII GACCGA 1 cut(s) 430
TasI AATT 5 cut(s) 95, 193, 322, 399, 418
TauI GCSGC 2 cut(s) 145, 154
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 2 cut(s) 318, 480
Tru9I TTAA 2 cut(s) 318, 480
TseFI GTSAC 2 cut(s) 89, 501
TseI GCWGC 2 cut(s) 550, 553
Tsp45I GTSAC 2 cut(s) 89, 501
TspDTI ATGAA 1 cut(s) 546
VpaK11BI GGWCC 2 cut(s) 348, 413
XagI CCTNNNNNAGG 1 cut(s) 372
XapI RAATTY 2 cut(s) 95, 418
XspI CTAG 3 cut(s) 341, 432, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.