Prupe.6G150100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015119
Physical Location & Seq
Forward (+)
12921915 .. 12923819
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G150100.1

Sequence Viewer

Length: 807 bp
ATGGAGGGAACGGTAGAAGGGGACGGATCGGGTGCGGGCAGATACACGCTGAGACCAACGAGGATAAGCAACGAGGACATACTGTTCTGTATAGATGTTGGCCCAGAGTCTATGGTGGAGCTCAAAGTAGCGATGAGCCCAAATGGGCGACCTTCAACCCGCCTGGACTCGATTAAACAAGCCATACTTCTCTTCATCAACGCCAAGCTCACCATCAACCCAGAGAACCGATTTGCCTTTGCCAGTCTCGGAAAGTCCGCGTCTTGGCTTCGGAAGGAGTTTAGCAGTGAAGTCGAGTCTGCTTTTGCTGCATTTCGAGTACTCCCAGCTACTTCATCTTCTAGTAATGCAGATCTTACCAGTCTATTTCGAGTAGCAGCTCATGAAGCAAAAAAATCTCGTGCTCAAAACAGACTTTTAAGGGTGATTCTTATTTACTGTAGATCATCTATAAGACCACATCATCAATGGCCTGTGAACCAGAAACTCTTCACTCTGGATGTAGTTTACCTTCACGAAAAGCCTGGACCTGACAACTACCCTCAAGAGGTCTACAATTCACTTGTGGATGCCGTGGAACATGTTAGCGAATATGAGGGCTACACCTTGGAGACCGGTCAGCTATTAGCCCGAATTCTCTTCCGTTACATGTGTATGCTGCTATCCCACCCTCAGCAGCGTTGCCCACGAGACCAGCTGGACATACCTAAGCCTCTTGGGAAAAAGTTGCCGGCAGCAGACTCAATGACTACTGATGATAGCATAACTGTATCTGGCAAATCAGAAGTTCAGAACATTAGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.97

Weight (kDa)

8.3

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32960
fragaria_vesca FvH4_2g32160 FvH4_2g32160
malus_domestica MD08G1073300.v1.1
prunus_persica Prupe.1G414700_v2.0.a1 Prupe.6G150100_v2.0.a1
pyrus_communis pycom08g06070
rosa_chinensis RchiOBHm_Chr6g0310521
rosa_laevigata RLG00000010476
rosa_roxburghii Rroxscaffold_7G00158460
rosa_rugosa Rorug06G0381200
rosa_samantha Rh6AG495100 Rh6BG504700 Rh6CG510000 Rh6DG496000
rosa_wichuraiana Rw6G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 552
AccII CGCG 1 cut(s) 260
AciI CCGC 3 cut(s) 35, 160, 258
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 633
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 264, 547
AflIII ACRYGT 2 cut(s) 580, 648
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 1 cut(s) 156
AjnI CCWGG 2 cut(s) 162, 523
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 6 cut(s) 121, 208, 329, 380, 622, 697
AluI AGCT 6 cut(s) 121, 208, 329, 380, 622, 697
Alw21I GWGCWC 2 cut(s) 123, 406
Alw26I GTCTC 4 cut(s) 46, 251, 605, 684
AlwI GGATC 1 cut(s) 34
AoxI GGCC 2 cut(s) 100, 470
ApeKI GCWGC 5 cut(s) 308, 377, 658, 676, 734
ApoI RAATTY 1 cut(s) 633
AsiGI ACCGGT 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 488
AspS9I GGNCC 2 cut(s) 101, 527
AsuHPI GGTGA 2 cut(s) 202, 436
AvaII GGWCC 1 cut(s) 527
BanII GRGCYC 2 cut(s) 123, 140
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BauI CACGAG 2 cut(s) 399, 687
Bbv12I GWGCWC 2 cut(s) 123, 406
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 5 cut(s) 295, 389, 645, 688, 746
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 557
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 2 cut(s) 164, 525
BcoDI GTCTC 4 cut(s) 46, 251, 605, 684
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 439
BglII AGATCT 1 cut(s) 352
BisI GCNGC 5 cut(s) 309, 378, 659, 677, 735
BlsI GCNGC 5 cut(s) 310, 379, 660, 678, 736
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 164, 525
Bme18I GGWCC 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 101, 527
BmrFI CCNGG 2 cut(s) 164, 525
BmsI GCATC 1 cut(s) 559
Bpu10I CCTNAGC 2 cut(s) 672, 708
BpuEI CTTGAG 1 cut(s) 528
BsaI GGTCTC 3 cut(s) 46, 605, 684
BsaJI CCNNGG 2 cut(s) 573, 606
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 547
Bse118I RCCGGY 2 cut(s) 614, 730
Bse1I ACTGG 2 cut(s) 243, 360
BseBI CCWGG 2 cut(s) 164, 525
BseDI CCNNGG 2 cut(s) 573, 606
BseGI GGATG 2 cut(s) 505, 574
BseLI CCNNNNNNNGG 2 cut(s) 264, 547
BseMII CTCAG 2 cut(s) 41, 686
BseNI ACTGG 2 cut(s) 243, 360
BseXI GCAGC 5 cut(s) 295, 389, 645, 688, 746
BseYI CCCAGC 1 cut(s) 325
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 2 cut(s) 102, 472
BshTI ACCGGT 1 cut(s) 614
BsiHKAI GWGCWC 2 cut(s) 123, 406
BsiSI CCGG 2 cut(s) 615, 731
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 264, 547
BsmAI GTCTC 4 cut(s) 46, 251, 605, 684
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 102, 472
Bso31I GGTCTC 3 cut(s) 46, 605, 684
Bsp1286I GDGCHC 3 cut(s) 123, 140, 406
Bsp143I GATC 3 cut(s) 26, 352, 443
BspACI CCGC 3 cut(s) 35, 160, 258
BspANI GGCC 2 cut(s) 102, 472
BspCNI CTCAG 2 cut(s) 42, 685
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 382
BspPI GGATC 1 cut(s) 34
BspTNI GGTCTC 3 cut(s) 46, 605, 684
BsrFI RCCGGY 2 cut(s) 614, 730
BsrI ACTGG 2 cut(s) 243, 360
BssAI RCCGGY 2 cut(s) 614, 730
BssECI CCNNGG 2 cut(s) 573, 606
BssMI GATC 3 cut(s) 26, 352, 443
BssSI CACGAG 2 cut(s) 399, 687
BssT1I CCWWGG 1 cut(s) 606
Bst2BI CACGAG 2 cut(s) 399, 687
Bst2UI CCWGG 2 cut(s) 164, 525
Bst4CI ACNGT 4 cut(s) 13, 84, 440, 769
Bst6I CTCTTC 3 cut(s) 197, 494, 644
BstC8I GCNNGC 2 cut(s) 37, 732
BstDEI CTNAG 3 cut(s) 50, 672, 708
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 2 cut(s) 505, 574
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 3 cut(s) 29, 355, 446
BstMAI GTCTC 4 cut(s) 46, 251, 605, 684
BstMBI GATC 3 cut(s) 26, 352, 443
BstMWI GCNNNNNNNGC 2 cut(s) 308, 386
BstNI CCWGG 2 cut(s) 164, 525
BstNSI RCATGY 2 cut(s) 584, 652
BstSCI CCNGG 2 cut(s) 162, 523
BstSFI CTRYAG 1 cut(s) 439
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 5 cut(s) 295, 389, 645, 688, 746
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 2 cut(s) 102, 472
BtgI CCRYGG 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 505, 574
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 37, 732
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 2 cut(s) 614, 730
Cfr13I GGNCC 2 cut(s) 101, 527
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 320
CspAI ACCGGT 1 cut(s) 614
CviAII CATG 3 cut(s) 383, 581, 649
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 3 cut(s) 50, 672, 708
DpnI GATC 3 cut(s) 28, 354, 445
DpnII GATC 3 cut(s) 26, 352, 443
Eam1104I CTCTTC 3 cut(s) 197, 494, 644
EarI CTCTTC 3 cut(s) 197, 494, 644
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 2 cut(s) 123, 140
Eco31I GGTCTC 3 cut(s) 46, 605, 684
Eco47I GGWCC 1 cut(s) 527
Eco53kI GAGCTC 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 633
EcoRII CCWGG 2 cut(s) 162, 523
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 2 cut(s) 123, 140
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 3 cut(s) 386, 584, 652
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 382, 580, 648
FauI CCCGC 2 cut(s) 28, 167
FblI GTMKAC 1 cut(s) 552
Fnu4HI GCNGC 5 cut(s) 309, 378, 659, 677, 735
FokI GGATG 2 cut(s) 512, 581
FriOI GRGCYC 2 cut(s) 123, 140
Fsp4HI GCNGC 5 cut(s) 309, 378, 659, 677, 735
FspBI CTAG 1 cut(s) 342
GluI GCNGC 5 cut(s) 309, 378, 659, 677, 735
GsaI CCCAGC 1 cut(s) 329
HaeIII GGCC 2 cut(s) 102, 472
HapII CCGG 2 cut(s) 615, 731
HgaI GACGC 1 cut(s) 249
Hin1II CATG 3 cut(s) 386, 584, 652
HinfI GANTC 5 cut(s) 107, 167, 296, 427, 740
HpaII CCGG 2 cut(s) 615, 731
HphI GGTGA 2 cut(s) 202, 436
Hpy166II GTNNAC 3 cut(s) 478, 508, 553
Hpy188I TCNGA 4 cut(s) 251, 273, 784, 792
Hpy188III TCNNGA 4 cut(s) 383, 497, 515, 545
Hpy8I GTNNAC 3 cut(s) 478, 508, 553
HpyAV CCTTC 4 cut(s) 11, 162, 268, 521
HpyCH4III ACNGT 4 cut(s) 13, 84, 440, 769
HpyCH4V TGCA 2 cut(s) 311, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 386
HpyF3I CTNAG 3 cut(s) 50, 672, 708
Hsp92II CATG 3 cut(s) 386, 584, 652
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Kzo9I GATC 3 cut(s) 26, 352, 443
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 5 cut(s) 295, 389, 645, 688, 746
LweI GCATC 1 cut(s) 559
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 644
MalI GATC 3 cut(s) 28, 354, 445
MboI GATC 3 cut(s) 26, 352, 443
MboII GAAGA 4 cut(s) 184, 330, 481, 631
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 3 cut(s) 123, 140, 406
MluCI AATT 2 cut(s) 556, 633
MlyI GAGTC 4 cut(s) 116, 161, 305, 734
MnlI CCTC 7 cut(s) 54, 67, 541, 552, 589, 681, 723
MroNI GCCGGC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 3 cut(s) 174, 419, 805
MslI CAYNNNNRTG 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 697
MspI CCGG 2 cut(s) 615, 731
MspR9I CCNGG 2 cut(s) 164, 525
MvaI CCWGG 2 cut(s) 164, 525
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 2 cut(s) 308, 386
NaeI GCCGGC 1 cut(s) 732
NdeII GATC 3 cut(s) 26, 352, 443
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 3 cut(s) 386, 584, 652
NspI RCATGY 2 cut(s) 584, 652
PagI TCATGA 1 cut(s) 382
PciI ACATGT 2 cut(s) 580, 648
PdiI GCCGGC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 427
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 5 cut(s) 310, 379, 660, 678, 736
PleI GAGTC 4 cut(s) 115, 161, 304, 734
PpsI GAGTC 4 cut(s) 115, 161, 304, 734
PscI ACATGT 2 cut(s) 580, 648
Psp124BI GAGCTC 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 162, 523
PspFI CCCAGC 1 cut(s) 325
PspGI CCWGG 2 cut(s) 162, 523
PspPI GGNCC 2 cut(s) 101, 527
PsuI RGATCY 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 697
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 653
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 174, 419, 805
SatI GCNGC 5 cut(s) 309, 378, 659, 677, 735
Sau3AI GATC 3 cut(s) 26, 352, 443
Sau96I GGNCC 2 cut(s) 101, 527
ScaI AGTACT 1 cut(s) 321
SchI GAGTC 4 cut(s) 116, 161, 305, 734
ScrFI CCNGG 2 cut(s) 164, 525
SduI GDGCHC 3 cut(s) 123, 140, 406
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 1 cut(s) 439
SinI GGWCC 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 543
SmoI CTYRAG 1 cut(s) 543
Sse9I AATT 2 cut(s) 556, 633
SsiI CCGC 3 cut(s) 35, 160, 258
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 162, 523
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 4 cut(s) 13, 84, 440, 769
TaqI TCGA 4 cut(s) 170, 294, 316, 370
TasI AATT 2 cut(s) 556, 633
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 3 cut(s) 174, 419, 805
Tru9I TTAA 3 cut(s) 174, 419, 805
TscAI CASTG 1 cut(s) 292
TseI GCWGC 5 cut(s) 308, 377, 658, 676, 734
TspDTI ATGAA 3 cut(s) 184, 324, 399
TspGWI ACGGA 2 cut(s) 39, 632
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 1 cut(s) 633
XceI RCATGY 2 cut(s) 584, 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
XmiI GTMKAC 1 cut(s) 552
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.