Rh6DG496000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015119
Physical Location & Seq
Reverse (-)
65386817 .. 65388678
1862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG496000.1

Sequence Viewer

Length: 768 bp
ATGGAGGGGGAGGGGGAGGGATCGGGGGCGATGAGGTACACGCTGAGGCCGGAGAGGGTGAGCAACGAGGACATACTGTTCTGCGTGGATGTTGACCCGGAGTGTATGTCGGAGATGAAAACCGGGCCAAATGGGCGGCCCTTTACCCGATTGGACTCCATCAAGCAAGCCATCCTTCTCTTCATCAACGCCAAGCTCACCATCAACCCGGAACACCGATTCGCCTTCTCCGTTCTCGCAAAGTCCGTGTCTTGGATTCGGAAAGAGTTCAGCAGTGATGTCGAGTCTGCTAAGGCTGCTTTTCGAGCGCTGTATCCTACTTCATCATCCGGGCATGCAGATCTTACCACTCTATTTCGAATAGCAGCTCATGAAGCAAAGAAATCTCGGGCTCAGAAAAGAATATTGAGGGTGATTCTTATCTACTGCAGATCATCACTACAACCACAACATCAATGGCCTGTTAATCAGAAAATCTTCACTATGGATGTGGTTTACCTTCATGACAAGCCTGGACCCGACAACTGCCCCCAGCTGGTGTATGATAAACTTGTGGAAGCCCTTGAACATGTTACTGAATTTGAGGGCTACATCTTGGAGAGTGGTCAGGGGTTATCACGAACCCTCTTCCGTCACATGTGTTTGCTGCTGTCACACCCTCAGCAGCGTTGCTCACAAGATTACCTGGACATACCCAAGTCTCTCGCAAAAAGGTTGCCAGCAGACTCAGCACCCGGTGACGATAGTATACCTGTATCCAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

28.74

Weight (kDa)

7.08

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32960
fragaria_vesca FvH4_2g32160 FvH4_2g32160
malus_domestica MD08G1073300.v1.1
prunus_persica Prupe.1G414700_v2.0.a1 Prupe.6G150100_v2.0.a1
pyrus_communis pycom08g06070
rosa_chinensis RchiOBHm_Chr6g0310521
rosa_laevigata RLG00000010476
rosa_roxburghii Rroxscaffold_7G00158460
rosa_rugosa Rorug06G0381200
rosa_samantha Rh6AG495100 Rh6BG504700 Rh6CG510000 Rh6DG496000
rosa_wichuraiana Rw6G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 748
AciI CCGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 578
AdeI CACNNNGTG 1 cut(s) 737
AfaI GTAC 1 cut(s) 38
AfeI AGCGCT 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 252, 535
AflIII ACRYGT 2 cut(s) 568, 636
AgsI TTSAA 1 cut(s) 566
AjnI CCWGG 2 cut(s) 511, 684
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 3 cut(s) 196, 368, 535
AluI AGCT 3 cut(s) 196, 368, 535
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 387
Aor51HI AGCGCT 1 cut(s) 309
AoxI GGCC 4 cut(s) 47, 125, 137, 458
ApeKI GCWGC 4 cut(s) 296, 365, 646, 664
ApoI RAATTY 1 cut(s) 578
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
Asp700I GAANNNNTTC 2 cut(s) 266, 476
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 3 cut(s) 125, 138, 515
AsuC2I CCSGG 5 cut(s) 98, 124, 209, 331, 735
AsuHPI GGTGA 4 cut(s) 70, 190, 424, 749
AsuII TTCGAA 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 515
BanII GRGCYC 1 cut(s) 394
BbvCI CCTCAGC 2 cut(s) 44, 660
BbvI GCAGC 4 cut(s) 283, 377, 633, 676
BccI CCATC 3 cut(s) 167, 179, 209
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciT130I CCWGG 2 cut(s) 513, 686
BciVI GTATCC 2 cut(s) 324, 766
BcnI CCSGG 5 cut(s) 98, 124, 209, 331, 735
BcoDI GTCTC 1 cut(s) 705
BfmI CTRYAG 1 cut(s) 427
BfoI RGCGCY 1 cut(s) 311
BfuI GTATCC 2 cut(s) 324, 766
BglI GCCNNNNNGGC 1 cut(s) 133
BglII AGATCT 1 cut(s) 340
BisI GCNGC 5 cut(s) 137, 297, 366, 647, 665
BlsI GCNGC 5 cut(s) 138, 298, 367, 648, 666
Bme1390I CCNGG 7 cut(s) 98, 124, 209, 331, 513, 686, 735
Bme18I GGWCC 1 cut(s) 515
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 3 cut(s) 125, 138, 515
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 7 cut(s) 98, 124, 209, 331, 513, 686, 735
Bpu10I CCTNAGC 3 cut(s) 44, 291, 660
Bpu14I TTCGAA 1 cut(s) 358
BpuMI CCSGG 5 cut(s) 98, 124, 209, 331, 735
BsaBI GATNNNNATC 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 252, 535
Bse8I GATNNNNATC 1 cut(s) 419
BseBI CCWGG 2 cut(s) 513, 686
BseGI GGATG 4 cut(s) 94, 171, 326, 493
BseJI GATNNNNATC 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 252, 535
BseMII CTCAG 4 cut(s) 35, 407, 674, 741
BseXI GCAGC 4 cut(s) 283, 377, 633, 676
BseYI CCCAGC 1 cut(s) 531
BshFI GGCC 4 cut(s) 49, 127, 139, 460
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 6 cut(s) 50, 98, 123, 209, 330, 735
BslI CCNNNNNNNGG 2 cut(s) 252, 535
BsmAI GTCTC 1 cut(s) 705
BsnI GGCC 4 cut(s) 49, 127, 139, 460
BsoBI CYCGRG 1 cut(s) 387
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 3 cut(s) 20, 340, 431
BspACI CCGC 1 cut(s) 136
BspANI GGCC 4 cut(s) 49, 127, 139, 460
BspCNI CTCAG 4 cut(s) 36, 406, 673, 740
BspHI TCATGA 2 cut(s) 370, 502
BspLI GGNNCC 1 cut(s) 517
BspMAI CTGCAG 1 cut(s) 431
BspPI GGATC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 358
BssMI GATC 3 cut(s) 20, 340, 431
BssNAI GTATAC 1 cut(s) 749
Bst1107I GTATAC 1 cut(s) 749
Bst2UI CCWGG 2 cut(s) 513, 686
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 185, 632
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 3 cut(s) 168, 336, 720
BstDEI CTNAG 5 cut(s) 44, 291, 393, 660, 727
BstF5I GGATG 4 cut(s) 94, 171, 326, 493
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 3 cut(s) 23, 343, 434
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 3 cut(s) 20, 340, 431
BstMWI GCNNNNNNNGC 5 cut(s) 133, 296, 305, 374, 728
BstNI CCWGG 2 cut(s) 513, 686
BstNSI RCATGY 3 cut(s) 338, 572, 640
BstSCI CCNGG 7 cut(s) 96, 122, 207, 329, 511, 684, 733
BstSFI CTRYAG 1 cut(s) 427
BstV1I GCAGC 4 cut(s) 283, 377, 633, 676
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BstZ17I GTATAC 1 cut(s) 749
BsuI GTATCC 2 cut(s) 324, 766
BsuRI GGCC 4 cut(s) 49, 127, 139, 460
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 4 cut(s) 94, 171, 326, 493
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 168, 336, 720
CciI TCATGA 2 cut(s) 370, 502
CfoI GCGC 1 cut(s) 310
Cfr13I GGNCC 3 cut(s) 125, 138, 515
Csp6I GTAC 1 cut(s) 37
CviAII CATG 5 cut(s) 335, 371, 503, 569, 637
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 5 cut(s) 44, 291, 393, 660, 727
DpnI GATC 3 cut(s) 22, 342, 433
DpnII GATC 3 cut(s) 20, 340, 431
DraIII CACNNNGTG 1 cut(s) 737
Eam1104I CTCTTC 2 cut(s) 185, 632
EarI CTCTTC 2 cut(s) 185, 632
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 515
Eco47III AGCGCT 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 511, 684
EcoT38I GRGCYC 1 cut(s) 394
FaeI CATG 5 cut(s) 338, 374, 506, 572, 640
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 5 cut(s) 334, 370, 502, 568, 636
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 5 cut(s) 137, 297, 366, 647, 665
FokI GGATG 4 cut(s) 101, 158, 313, 500
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 137, 297, 366, 647, 665
GlaI GCGC 1 cut(s) 309
GluI GCNGC 5 cut(s) 137, 297, 366, 647, 665
GsaI CCCAGC 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 4 cut(s) 49, 127, 139, 460
HapII CCGG 6 cut(s) 50, 98, 123, 209, 330, 735
HhaI GCGC 1 cut(s) 310
Hin1II CATG 5 cut(s) 338, 374, 506, 572, 640
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 6 cut(s) 155, 219, 256, 284, 415, 725
HpaII CCGG 6 cut(s) 50, 98, 123, 209, 330, 735
HphI GGTGA 4 cut(s) 70, 190, 424, 749
Hpy166II GTNNAC 4 cut(s) 39, 94, 496, 749
Hpy188I TCNGA 4 cut(s) 112, 261, 396, 471
Hpy188III TCNNGA 3 cut(s) 371, 503, 618
Hpy8I GTNNAC 4 cut(s) 39, 94, 496, 749
HpyAV CCTTC 3 cut(s) 185, 235, 509
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 2 cut(s) 338, 429
HpyF10VI GCNNNNNNNGC 5 cut(s) 133, 296, 305, 374, 728
HpyF3I CTNAG 5 cut(s) 44, 291, 393, 660, 727
Hsp92II CATG 5 cut(s) 338, 374, 506, 572, 640
HspAI GCGC 1 cut(s) 308
Kzo9I GATC 3 cut(s) 20, 340, 431
Lsp1109I GCAGC 4 cut(s) 283, 377, 633, 676
MaeIII GTNAC 4 cut(s) 571, 632, 651, 737
MalI GATC 3 cut(s) 22, 342, 433
MboI GATC 3 cut(s) 20, 340, 431
MboII GAAGA 3 cut(s) 172, 469, 619
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 1 cut(s) 578
MlyI GAGTC 3 cut(s) 149, 293, 719
MmeI TCCRAC 1 cut(s) 90
MroXI GAANNNNTTC 2 cut(s) 266, 476
MseI TTAA 1 cut(s) 465
MspA1I CMGCKG 1 cut(s) 535
MspI CCGG 6 cut(s) 50, 98, 123, 209, 330, 735
MspR9I CCNGG 7 cut(s) 98, 124, 209, 331, 513, 686, 735
MvaI CCWGG 2 cut(s) 513, 686
MwoI GCNNNNNNNGC 5 cut(s) 133, 296, 305, 374, 728
NciI CCSGG 5 cut(s) 98, 124, 209, 331, 735
NdeII GATC 3 cut(s) 20, 340, 431
NlaIII CATG 5 cut(s) 338, 374, 506, 572, 640
NlaIV GGNNCC 1 cut(s) 517
NmuCI GTSAC 3 cut(s) 632, 651, 737
NspI RCATGY 3 cut(s) 338, 572, 640
NspV TTCGAA 1 cut(s) 358
PaeI GCATGC 1 cut(s) 338
PagI TCATGA 2 cut(s) 370, 502
PciI ACATGT 2 cut(s) 568, 636
PcsI WCGNNNNNNNCGW 2 cut(s) 228, 243
PdmI GAANNNNTTC 2 cut(s) 266, 476
PfeI GAWTC 3 cut(s) 219, 256, 415
PkrI GCNGC 5 cut(s) 138, 298, 367, 648, 666
PleI GAGTC 3 cut(s) 149, 292, 719
PpsI GAGTC 3 cut(s) 149, 292, 719
PscI ACATGT 2 cut(s) 568, 636
Psp6I CCWGG 2 cut(s) 511, 684
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 2 cut(s) 511, 684
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 3 cut(s) 125, 138, 515
PstI CTGCAG 1 cut(s) 431
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 535
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 5 cut(s) 137, 297, 366, 647, 665
Sau3AI GATC 3 cut(s) 20, 340, 431
Sau96I GGNCC 3 cut(s) 125, 138, 515
SchI GAGTC 3 cut(s) 149, 293, 719
ScrFI CCNGG 7 cut(s) 98, 124, 209, 331, 513, 686, 735
SduI GDGCHC 1 cut(s) 394
SetI ASST 8 cut(s) 38, 198, 370, 501, 537, 687, 716, 754
SfcI CTRYAG 1 cut(s) 427
SfuI TTCGAA 1 cut(s) 358
SinI GGWCC 1 cut(s) 515
SphI GCATGC 1 cut(s) 338
Sse9I AATT 1 cut(s) 578
SsiI CCGC 1 cut(s) 136
SspI AATATT 1 cut(s) 405
StyD4I CCNGG 7 cut(s) 96, 122, 207, 329, 511, 684, 733
TaaI ACNGT 1 cut(s) 78
TaqI TCGA 3 cut(s) 282, 304, 358
TasI AATT 1 cut(s) 578
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 3 cut(s) 219, 256, 415
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 3 cut(s) 632, 651, 737
TseI GCWGC 4 cut(s) 296, 365, 646, 664
Tsp45I GTSAC 3 cut(s) 632, 651, 737
TspDTI ATGAA 5 cut(s) 131, 172, 312, 387, 491
TspGWI ACGGA 3 cut(s) 220, 235, 620
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 1 cut(s) 578
XceI RCATGY 3 cut(s) 338, 572, 640
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XmiI GTMKAC 1 cut(s) 748
XmnI GAANNNNTTC 2 cut(s) 266, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.