Prupe.1G414700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015119
Physical Location & Seq
Forward (+)
36081813 .. 36083995
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G414700.1

Sequence Viewer

Length: 810 bp
ATGGAGGAAATAGTAGAAGGGGACGGGTCGGGTGCGGGCAGATACACGCTGAGACCAACGAGGCTAAGCAACGAGGACATTCTGTTCTGTATAGATGTTGACCCAGAGTCTATGGTGGAGATGAAAGCCGCGATGGGCCCAAATGGGCGACCTTTAACCCGCTTGGACTCGATCAAGCAAGCCATACTTGTCTTCATCAACGCCAAGCTCACCATCAACCCAGAGCACCGATTCGCCTTTGCCTGTCTCGGAAAGTCCGCGTCTTGGCTTCGGAAAGAGTTTAGCAGTGAAGTCGATTCTGCTATTGCTGCATTTCGAGTACTCTCAGCTACTTCATCTTCTAGTAATGCAGATCTTACCAGTCTATTTCGAGTAGCAGCTCATGAAGCAAAGAAATCTCGTGCTCAAAACAGACTTTTAAGGGTGATTCTTATTTACTGTAGATCATCTGTAAGACCAAATCATCAATGGCCTGTGAACCAGAAACTCTTCACTCTGGATGTAGTTTACCTTCACGACAAGCCTGGACCTGAAAACTGCCCTCAAGAGGTCTATGATTCACTTGTGGATGCCCTGGAACTTGTTAGCGAATATGAGGGCTACATCTTGGAGAGCGGTCAGGGATTAACTCGAGTTCTCTTCCGTTACATGTGCATGCTGCTATCACACCCTCAGCAGCGTTGCCCACAAGACCATCTGGACATACCTAAGCCTCTTGCGAAAAAGTTGCCGGCAGCAGATTCAACGACTACTGATGATAGTATTATAACTGTGTCCGGCATATCAGAAGTTCAGAACATTAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.0

Weight (kDa)

6.1

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32960
fragaria_vesca FvH4_2g32160 FvH4_2g32160
malus_domestica MD08G1073300.v1.1
prunus_persica Prupe.1G414700_v2.0.a1 Prupe.6G150100_v2.0.a1
pyrus_communis pycom08g06070
rosa_chinensis RchiOBHm_Chr6g0310521
rosa_laevigata RLG00000010476
rosa_roxburghii Rroxscaffold_7G00158460
rosa_rugosa Rorug06G0381200
rosa_samantha Rh6AG495100 Rh6BG504700 Rh6CG510000 Rh6DG496000
rosa_wichuraiana Rw6G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
AccBSI CCGCTC 1 cut(s) 615
AccII CGCG 2 cut(s) 131, 260
AciI CCGC 5 cut(s) 35, 129, 160, 258, 615
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 264, 547
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 1 cut(s) 744
AhdI GACNNNNNGTC 1 cut(s) 106
AjnI CCWGG 2 cut(s) 523, 573
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 3 cut(s) 208, 329, 380
AluI AGCT 3 cut(s) 208, 329, 380
Alw21I GWGCWC 2 cut(s) 228, 406
Alw26I GTCTC 2 cut(s) 46, 251
Ama87I CYCGRG 1 cut(s) 630
AoxI GGCC 2 cut(s) 136, 470
ApaI GGGCCC 1 cut(s) 140
ApeKI GCWGC 5 cut(s) 308, 377, 658, 676, 734
Asp700I GAANNNNTTC 1 cut(s) 488
AspS9I GGNCC 3 cut(s) 136, 137, 527
AsuHPI GGTGA 2 cut(s) 202, 436
AvaI CYCGRG 1 cut(s) 630
AvaII GGWCC 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 140
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 228, 406
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 5 cut(s) 295, 389, 645, 688, 746
BccI CCATC 3 cut(s) 127, 221, 702
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 709, 743
BciT130I CCWGG 2 cut(s) 525, 575
BcoDI GTCTC 2 cut(s) 46, 251
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 439
BglII AGATCT 1 cut(s) 352
BisI GCNGC 6 cut(s) 129, 309, 378, 659, 677, 735
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 6 cut(s) 130, 310, 379, 660, 678, 736
BmcAI AGTACT 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 525, 575
Bme18I GGWCC 1 cut(s) 527
BmeRI GACNNNNNGTC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 630
BmgT120I GGNCC 3 cut(s) 136, 137, 527
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 2 cut(s) 525, 575
BmsI GCATC 1 cut(s) 559
BpiI GAAGAC 1 cut(s) 184
Bpu10I CCTNAGC 2 cut(s) 672, 708
Bpu1102I GCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 573
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 547
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 525, 575
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 2 cut(s) 505, 574
BseLI CCNNNNNNNGG 2 cut(s) 264, 547
BseMII CTCAG 3 cut(s) 41, 339, 686
BseNI ACTGG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 140
BseXI GCAGC 5 cut(s) 295, 389, 645, 688, 746
Bsh1236I CGCG 2 cut(s) 131, 260
BshFI GGCC 2 cut(s) 138, 472
BsiHKAI GWGCWC 2 cut(s) 228, 406
BsiHKCI CYCGRG 1 cut(s) 630
BsiSI CCGG 2 cut(s) 731, 777
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 264, 547
BsmAI GTCTC 2 cut(s) 46, 251
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 138, 472
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 630
Bsp120I GGGCCC 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 140, 228, 406
Bsp143I GATC 3 cut(s) 171, 352, 443
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 5 cut(s) 35, 129, 160, 258, 615
BspANI GGCC 2 cut(s) 138, 472
BspCNI CTCAG 3 cut(s) 42, 338, 685
BspFNI CGCG 2 cut(s) 131, 260
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 3 cut(s) 171, 352, 443
BssSI CACGAG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 525, 575
Bst4CI ACNGT 2 cut(s) 440, 772
Bst6I CTCTTC 2 cut(s) 494, 644
BstC8I GCNNGC 4 cut(s) 37, 180, 656, 732
BstDEI CTNAG 5 cut(s) 50, 65, 325, 672, 708
BstF5I GGATG 2 cut(s) 505, 574
BstFNI CGCG 2 cut(s) 131, 260
BstKTI GATC 3 cut(s) 174, 355, 446
BstMAI GTCTC 2 cut(s) 46, 251
BstMBI GATC 3 cut(s) 171, 352, 443
BstMWI GCNNNNNNNGC 2 cut(s) 308, 386
BstNI CCWGG 2 cut(s) 525, 575
BstNSI RCATGY 2 cut(s) 652, 658
BstSCI CCNGG 2 cut(s) 523, 573
BstSFI CTRYAG 1 cut(s) 439
BstSLI GKGCMC 1 cut(s) 140
BstUI CGCG 2 cut(s) 131, 260
BstV1I GCAGC 5 cut(s) 295, 389, 645, 688, 746
BstV2I GAAGAC 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 352
BstYI RGATCY 1 cut(s) 352
BsuRI GGCC 2 cut(s) 138, 472
BtgZI GCGATG 1 cut(s) 146
BtsCI GGATG 2 cut(s) 505, 574
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 37, 180, 656, 732
CciI TCATGA 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 3 cut(s) 136, 137, 527
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 320
CviAII CATG 3 cut(s) 383, 649, 655
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 5 cut(s) 50, 65, 325, 672, 708
DpnI GATC 3 cut(s) 173, 354, 445
DpnII GATC 3 cut(s) 171, 352, 443
DriI GACNNNNNGTC 1 cut(s) 106
Eam1104I CTCTTC 2 cut(s) 494, 644
Eam1105I GACNNNNNGTC 1 cut(s) 106
EarI CTCTTC 2 cut(s) 494, 644
Eco24I GRGCYC 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 630
EcoRII CCWGG 2 cut(s) 523, 573
EcoT38I GRGCYC 1 cut(s) 140
FaeI CATG 3 cut(s) 386, 652, 658
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 35
FatI CATG 3 cut(s) 382, 648, 654
FauI CCCGC 2 cut(s) 28, 167
Fnu4HI GCNGC 6 cut(s) 129, 309, 378, 659, 677, 735
FokI GGATG 2 cut(s) 512, 581
FriOI GRGCYC 1 cut(s) 140
Fsp4HI GCNGC 6 cut(s) 129, 309, 378, 659, 677, 735
FspBI CTAG 1 cut(s) 342
GluI GCNGC 6 cut(s) 129, 309, 378, 659, 677, 735
HaeIII GGCC 2 cut(s) 138, 472
HapII CCGG 2 cut(s) 731, 777
HgaI GACGC 1 cut(s) 249
Hin1II CATG 3 cut(s) 386, 652, 658
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 7 cut(s) 107, 167, 231, 296, 427, 557, 740
HpaII CCGG 2 cut(s) 731, 777
HphI GGTGA 2 cut(s) 202, 436
Hpy166II GTNNAC 3 cut(s) 100, 478, 508
Hpy188I TCNGA 4 cut(s) 251, 273, 787, 795
Hpy188III TCNNGA 5 cut(s) 383, 497, 515, 545, 698
Hpy8I GTNNAC 3 cut(s) 100, 478, 508
HpyAV CCTTC 2 cut(s) 11, 521
HpyCH4III ACNGT 2 cut(s) 440, 772
HpyCH4V TGCA 3 cut(s) 311, 350, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 386
HpyF3I CTNAG 5 cut(s) 50, 65, 325, 672, 708
Hsp92II CATG 3 cut(s) 386, 652, 658
KroI GCCGGC 1 cut(s) 730
KroNI GCCGGC 1 cut(s) 732
Kzo9I GATC 3 cut(s) 171, 352, 443
Lsp1109I GCAGC 5 cut(s) 295, 389, 645, 688, 746
LweI GCATC 1 cut(s) 559
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 644
MalI GATC 3 cut(s) 173, 354, 445
MbiI CCGCTC 1 cut(s) 615
MboI GATC 3 cut(s) 171, 352, 443
MboII GAAGA 4 cut(s) 184, 330, 481, 631
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 3 cut(s) 140, 228, 406
MluCI AATT 1 cut(s) 805
MlyI GAGTC 2 cut(s) 116, 161
MnlI CCTC 7 cut(s) 54, 67, 541, 552, 589, 681, 723
MroNI GCCGGC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 4 cut(s) 155, 419, 626, 808
MslI CAYNNNNRTG 1 cut(s) 653
MspI CCGG 2 cut(s) 731, 777
MspR9I CCNGG 2 cut(s) 525, 575
MvaI CCWGG 2 cut(s) 525, 575
MvnI CGCG 2 cut(s) 131, 260
MwoI GCNNNNNNNGC 2 cut(s) 308, 386
NaeI GCCGGC 1 cut(s) 732
NdeII GATC 3 cut(s) 171, 352, 443
NgoMIV GCCGGC 1 cut(s) 730
NlaIII CATG 3 cut(s) 386, 652, 658
NlaIV GGNNCC 1 cut(s) 138
NspI RCATGY 2 cut(s) 652, 658
PaeI GCATGC 1 cut(s) 658
PaeR7I CTCGAG 1 cut(s) 630
PagI TCATGA 1 cut(s) 382
PciI ACATGT 1 cut(s) 648
PdiI GCCGGC 1 cut(s) 732
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 5 cut(s) 231, 296, 427, 557, 740
PkrI GCNGC 6 cut(s) 130, 310, 379, 660, 678, 736
PleI GAGTC 2 cut(s) 115, 161
PpsI GAGTC 2 cut(s) 115, 161
PscI ACATGT 1 cut(s) 648
PsiI TTATAA 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 523, 573
PspGI CCWGG 2 cut(s) 523, 573
PspN4I GGNNCC 1 cut(s) 138
PspOMI GGGCCC 1 cut(s) 136
PspPI GGNCC 3 cut(s) 136, 137, 527
PspXI VCTCGAGB 1 cut(s) 630
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 4 cut(s) 155, 419, 626, 808
SatI GCNGC 6 cut(s) 129, 309, 378, 659, 677, 735
Sau3AI GATC 3 cut(s) 171, 352, 443
Sau96I GGNCC 3 cut(s) 136, 137, 527
ScaI AGTACT 1 cut(s) 321
SchI GAGTC 2 cut(s) 116, 161
ScrFI CCNGG 2 cut(s) 525, 575
SduI GDGCHC 3 cut(s) 140, 228, 406
SetI ASST 8 cut(s) 154, 210, 331, 382, 513, 532, 552, 709
SfaNI GCATC 1 cut(s) 559
SfcI CTRYAG 1 cut(s) 439
Sfr274I CTCGAG 1 cut(s) 630
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 630
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 2 cut(s) 543, 630
SmoI CTYRAG 2 cut(s) 543, 630
SphI GCATGC 1 cut(s) 658
Sse9I AATT 1 cut(s) 805
SsiI CCGC 5 cut(s) 35, 129, 160, 258, 615
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 523, 573
TaaI ACNGT 2 cut(s) 440, 772
TaqI TCGA 5 cut(s) 170, 294, 316, 370, 631
TasI AATT 1 cut(s) 805
TatI WGTACW 1 cut(s) 319
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 5 cut(s) 231, 296, 427, 557, 740
Tru1I TTAA 4 cut(s) 155, 419, 626, 808
Tru9I TTAA 4 cut(s) 155, 419, 626, 808
TscAI CASTG 1 cut(s) 292
TseI GCWGC 5 cut(s) 308, 377, 658, 676, 734
TspDTI ATGAA 4 cut(s) 137, 184, 324, 399
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 527
XceI RCATGY 2 cut(s) 652, 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 630
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 1 cut(s) 342
ZrmI AGTACT 1 cut(s) 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.