Rw6G043060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0015119
Physical Location & Seq
Reverse (-)
66456973 .. 66459187
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G043060.1

Sequence Viewer

Length: 771 bp
ATGGAGGGAGTCGAGGGGGAGGGATCGGGTGCGATGAGGTACACGCTGAGGCCGGAGAGGGTGAGCAACGAGGACATACTGTTCTGCGTGGATGTTGACCCGGAGTGTACGTCGGAGATGAAAAGCGGGCCAAATGGGCGGCCCCTTACCCGATTGGACTCCATCAAGCAAGCCATCCTTCTCTTCATCAACGCCAAGCTCACCATCAACCCGGAACACCGATTCGCCTTCTCCGTTCTCGCAAAGTCCGTGTCTTGGATTCGGAAAGAGTTTAGCAGTGATGTCGAGTCTGCTAAGGCTGCTTTTCGAGCGCTGAATCCTACTTCATCATCTGGGCATGCAGATCTTACCACTCTATTTCGAATAGCAGCTCATGAAGCAAAGAAATCTCGGGCTCAGAAAAGAATATTGAGGGTGATTCTTATCTACTGCAGATCATCATTACAACCACAACATCAATGGCCTGTTAATCAGAAAATCTTCACTATGGATGTTGTTTACCTTCATGACAAGCCTGGACCCGACAACTGCCCCCAGCTGGTGTATGATAAACTTGTGGAAGCCCTTGAACATGTTACTGAATTTGAGGGCTACATCTTGGAGAGTGGTCAGGGGTTATCACGAACCCTCTTCCGTCACATGTGTTTGCTGCTGTCACACCCTCAGCAGCGTTGCTCACAAGATTACCTGGACATACCCAAGTCTCTCGCAAAAAGGTTGCCAGCAGACTCAGCACCTGGTGACGATAGTATACCTGTATCCAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03440 map03440
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.71

Weight (kDa)

7.08

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32960
fragaria_vesca FvH4_2g32160 FvH4_2g32160
malus_domestica MD08G1073300.v1.1
prunus_persica Prupe.1G414700_v2.0.a1 Prupe.6G150100_v2.0.a1
pyrus_communis pycom08g06070
rosa_chinensis RchiOBHm_Chr6g0310521
rosa_laevigata RLG00000010476
rosa_roxburghii Rroxscaffold_7G00158460
rosa_rugosa Rorug06G0381200
rosa_samantha Rh6AG495100 Rh6BG504700 Rh6CG510000 Rh6DG496000
rosa_wichuraiana Rw6G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 751
AciI CCGC 2 cut(s) 126, 139
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 581
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 2 cut(s) 41, 109
AfeI AGCGCT 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 255, 538
AflIII ACRYGT 2 cut(s) 571, 639
AgsI TTSAA 1 cut(s) 569
AjnI CCWGG 3 cut(s) 514, 687, 736
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 199, 371, 538
AluI AGCT 3 cut(s) 199, 371, 538
Alw26I GTCTC 1 cut(s) 708
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 390
Aor51HI AGCGCT 1 cut(s) 312
AoxI GGCC 4 cut(s) 50, 128, 140, 461
ApeKI GCWGC 4 cut(s) 299, 368, 649, 667
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 236, 268
Asp700I GAANNNNTTC 1 cut(s) 479
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 3 cut(s) 128, 141, 518
AsuC2I CCSGG 2 cut(s) 101, 212
AsuHPI GGTGA 4 cut(s) 73, 193, 427, 752
AsuII TTCGAA 1 cut(s) 361
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 397
BbvCI CCTCAGC 2 cut(s) 47, 663
BbvI GCAGC 4 cut(s) 286, 380, 636, 679
BccI CCATC 3 cut(s) 170, 182, 212
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 3 cut(s) 516, 689, 738
BciVI GTATCC 1 cut(s) 769
BcnI CCSGG 2 cut(s) 101, 212
BcoDI GTCTC 1 cut(s) 708
BfmI CTRYAG 1 cut(s) 430
BfoI RGCGCY 1 cut(s) 314
BfuI GTATCC 1 cut(s) 769
BglI GCCNNNNNGGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 343
BisI GCNGC 5 cut(s) 140, 300, 369, 650, 668
BlsI GCNGC 5 cut(s) 141, 301, 370, 651, 669
Bme1390I CCNGG 5 cut(s) 101, 212, 516, 689, 738
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 128, 141, 518
BmiI GGNNCC 2 cut(s) 143, 520
BmrFI CCNGG 5 cut(s) 101, 212, 516, 689, 738
Bpu10I CCTNAGC 3 cut(s) 47, 294, 663
Bpu14I TTCGAA 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 101, 212
BsaBI GATNNNNATC 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 538
Bse8I GATNNNNATC 1 cut(s) 422
BseBI CCWGG 3 cut(s) 516, 689, 738
BseGI GGATG 3 cut(s) 97, 174, 496
BseJI GATNNNNATC 1 cut(s) 422
BseLI CCNNNNNNNGG 2 cut(s) 255, 538
BseMII CTCAG 4 cut(s) 38, 410, 677, 744
BseXI GCAGC 4 cut(s) 286, 380, 636, 679
BseYI CCCAGC 1 cut(s) 534
BshFI GGCC 4 cut(s) 52, 130, 142, 463
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 53, 101, 212
BslI CCNNNNNNNGG 2 cut(s) 255, 538
BsmAI GTCTC 1 cut(s) 708
BsnI GGCC 4 cut(s) 52, 130, 142, 463
BsoBI CYCGRG 1 cut(s) 390
Bsp119I TTCGAA 1 cut(s) 361
Bsp1286I GDGCHC 1 cut(s) 397
Bsp143I GATC 3 cut(s) 23, 343, 434
BspACI CCGC 2 cut(s) 126, 139
BspANI GGCC 4 cut(s) 52, 130, 142, 463
BspCNI CTCAG 4 cut(s) 39, 409, 676, 743
BspHI TCATGA 2 cut(s) 373, 505
BspLI GGNNCC 2 cut(s) 143, 520
BspMAI CTGCAG 1 cut(s) 434
BspPI GGATC 1 cut(s) 31
BspT104I TTCGAA 1 cut(s) 361
BssMI GATC 3 cut(s) 23, 343, 434
BssNAI GTATAC 1 cut(s) 752
Bst1107I GTATAC 1 cut(s) 752
Bst2UI CCWGG 3 cut(s) 516, 689, 738
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 2 cut(s) 188, 635
BstBI TTCGAA 1 cut(s) 361
BstC8I GCNNGC 4 cut(s) 128, 171, 339, 723
BstDEI CTNAG 5 cut(s) 47, 294, 396, 663, 730
BstF5I GGATG 3 cut(s) 97, 174, 496
BstH2I RGCGCY 1 cut(s) 314
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 26, 346, 437
BstMAI GTCTC 1 cut(s) 708
BstMBI GATC 3 cut(s) 23, 343, 434
BstMWI GCNNNNNNNGC 5 cut(s) 136, 299, 308, 377, 731
BstNI CCWGG 3 cut(s) 516, 689, 738
BstNSI RCATGY 3 cut(s) 341, 575, 643
BstSCI CCNGG 5 cut(s) 99, 210, 514, 687, 736
BstSFI CTRYAG 1 cut(s) 430
BstV1I GCAGC 4 cut(s) 286, 380, 636, 679
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BstZ17I GTATAC 1 cut(s) 752
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 4 cut(s) 52, 130, 142, 463
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 97, 174, 496
BtsI GCAGTG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 283
Cac8I GCNNGC 4 cut(s) 128, 171, 339, 723
CaiI CAGNNNCTG 1 cut(s) 737
CciI TCATGA 2 cut(s) 373, 505
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 3 cut(s) 128, 141, 518
CsiI ACCWGGT 1 cut(s) 736
Csp6I GTAC 2 cut(s) 40, 108
CviAII CATG 5 cut(s) 338, 374, 506, 572, 640
CviQI GTAC 2 cut(s) 40, 108
DdeI CTNAG 5 cut(s) 47, 294, 396, 663, 730
DpnI GATC 3 cut(s) 25, 345, 436
DpnII GATC 3 cut(s) 23, 343, 434
DraIII CACNNNGTG 1 cut(s) 740
Eam1104I CTCTTC 2 cut(s) 188, 635
EarI CTCTTC 2 cut(s) 188, 635
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 518
Eco47III AGCGCT 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 390
EcoRII CCWGG 3 cut(s) 514, 687, 736
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 5 cut(s) 341, 377, 509, 575, 643
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FatI CATG 5 cut(s) 337, 373, 505, 571, 639
FauI CCCGC 1 cut(s) 119
FblI GTMKAC 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 140, 300, 369, 650, 668
FokI GGATG 3 cut(s) 104, 161, 503
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 5 cut(s) 140, 300, 369, 650, 668
GlaI GCGC 1 cut(s) 312
GluI GCNGC 5 cut(s) 140, 300, 369, 650, 668
GsaI CCCAGC 1 cut(s) 538
HaeII RGCGCY 1 cut(s) 314
HaeIII GGCC 4 cut(s) 52, 130, 142, 463
HapII CCGG 3 cut(s) 53, 101, 212
HhaI GCGC 1 cut(s) 313
Hin1II CATG 5 cut(s) 341, 377, 509, 575, 643
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 8 cut(s) 9, 158, 222, 259, 287, 316, 418, 728
HpaII CCGG 3 cut(s) 53, 101, 212
HphI GGTGA 4 cut(s) 73, 193, 427, 752
Hpy166II GTNNAC 5 cut(s) 42, 97, 108, 499, 752
Hpy188I TCNGA 4 cut(s) 115, 264, 399, 474
Hpy188III TCNNGA 3 cut(s) 374, 506, 621
Hpy8I GTNNAC 5 cut(s) 42, 97, 108, 499, 752
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 188, 238, 512
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 2 cut(s) 341, 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 136, 299, 308, 377, 731
HpyF3I CTNAG 5 cut(s) 47, 294, 396, 663, 730
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 5 cut(s) 341, 377, 509, 575, 643
HspAI GCGC 1 cut(s) 311
Kzo9I GATC 3 cut(s) 23, 343, 434
Lsp1109I GCAGC 4 cut(s) 286, 380, 636, 679
MabI ACCWGGT 1 cut(s) 736
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 4 cut(s) 574, 635, 654, 740
MalI GATC 3 cut(s) 25, 345, 436
MboI GATC 3 cut(s) 23, 343, 434
MboII GAAGA 3 cut(s) 175, 472, 622
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 581
MlyI GAGTC 4 cut(s) 18, 152, 296, 722
MmeI TCCRAC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 1 cut(s) 468
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 3 cut(s) 53, 101, 212
MspR9I CCNGG 5 cut(s) 101, 212, 516, 689, 738
MvaI CCWGG 3 cut(s) 516, 689, 738
MwoI GCNNNNNNNGC 5 cut(s) 136, 299, 308, 377, 731
NciI CCSGG 2 cut(s) 101, 212
NdeII GATC 3 cut(s) 23, 343, 434
NlaIII CATG 5 cut(s) 341, 377, 509, 575, 643
NlaIV GGNNCC 2 cut(s) 143, 520
NmuCI GTSAC 3 cut(s) 635, 654, 740
NspI RCATGY 3 cut(s) 341, 575, 643
NspV TTCGAA 1 cut(s) 361
PaeI GCATGC 1 cut(s) 341
PagI TCATGA 2 cut(s) 373, 505
PciI ACATGT 2 cut(s) 571, 639
PcsI WCGNNNNNNNCGW 2 cut(s) 231, 246
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 4 cut(s) 222, 259, 316, 418
PkrI GCNGC 5 cut(s) 141, 301, 370, 651, 669
PleI GAGTC 4 cut(s) 17, 152, 295, 722
PpsI GAGTC 4 cut(s) 17, 152, 295, 722
PscI ACATGT 2 cut(s) 571, 639
Psp6I CCWGG 3 cut(s) 514, 687, 736
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 3 cut(s) 514, 687, 736
PspN4I GGNNCC 2 cut(s) 143, 520
PspPI GGNCC 3 cut(s) 128, 141, 518
PstI CTGCAG 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 538
RsaI GTAC 2 cut(s) 41, 109
RsaNI GTAC 2 cut(s) 40, 108
SaqAI TTAA 1 cut(s) 468
SatI GCNGC 5 cut(s) 140, 300, 369, 650, 668
Sau3AI GATC 3 cut(s) 23, 343, 434
Sau96I GGNCC 3 cut(s) 128, 141, 518
SchI GAGTC 4 cut(s) 18, 152, 296, 722
ScrFI CCNGG 5 cut(s) 101, 212, 516, 689, 738
SduI GDGCHC 1 cut(s) 397
SexAI ACCWGGT 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 430
SfuI TTCGAA 1 cut(s) 361
SinI GGWCC 1 cut(s) 518
SphI GCATGC 1 cut(s) 341
Sse9I AATT 1 cut(s) 581
SsiI CCGC 2 cut(s) 126, 139
SspI AATATT 1 cut(s) 408
StyD4I CCNGG 5 cut(s) 99, 210, 514, 687, 736
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 12, 285, 307, 361
TasI AATT 1 cut(s) 581
TauI GCSGC 1 cut(s) 142
TfiI GAWTC 4 cut(s) 222, 259, 316, 418
Tru1I TTAA 1 cut(s) 468
Tru9I TTAA 1 cut(s) 468
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 3 cut(s) 635, 654, 740
TseI GCWGC 4 cut(s) 299, 368, 649, 667
Tsp45I GTSAC 3 cut(s) 635, 654, 740
TspDTI ATGAA 5 cut(s) 134, 175, 315, 390, 494
TspGWI ACGGA 3 cut(s) 223, 238, 623
TspRI CASTG 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 1 cut(s) 581
XceI RCATGY 3 cut(s) 341, 575, 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XmiI GTMKAC 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.