AT4G33060

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011445
Physical Location & Seq
Forward (+)
15948455 .. 15952255
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33060.1

Sequence Viewer

Length: 1515 bp
ATGTCGACGGTGTACGTGCTAGAGCCGCCGACAAAGGGAAAGGTCATTGTAAATACTACTCATGGTCCAATCGACGTCGAGCTTTGGCCTAAGGAAGCGCCCAAATCCGTACGGAACTTCGTTCAACTATGCCTCGAGGGTTACTTTGACAACACCATCTTCCATCGTGTCATTCCCGGTTTTCTCGTTCAAGGCGGCGATCCCACCGGCTCCGGAACCGGTGGAGATAGTATATATGGAGGTGTCTTTGCCGATGAGTTCCATTCAAGGCTGAGATTTAGCCACCGTGGGATTGTTGCCATGGCTAATGCGAGCTCACCTAATTCTAATGGAAGTCAGTTCTTTTTCACTTTGGATAAGTGTGATTGGCTTGATAAGAAGCACACTATCTTTGGCAAGGTAACGGGCGATTCAATCTACAATCTTTTAAGACTAGGAGAGGTTGACACGAGTAAGGATGATCGACCTCTGGATCCTGCTCCGAAAATATTATCTGTCGAGGTTTTGTGGAACCCTTTTGAAGATATTGTTCCTAGAGTGTTAGCAAAGACATCAGAAGAATCTGCTGCTGAAATCAAGGAACCCCCAACAAAGCCCGTGAAGAAATTGAATTTACTGTCATTCGGAGAAGAAGCTGAAGAAGAGGAAAAGGAACTGGCTGTTGTAAAGCAAAAGATTAAGAGCAGTCATGACGTATTGAATGATCCTCGACTTTTGAAGGCAGAAGCTTCAGATAAAGAGAGGAACGCATCTGAGTCCAAGGAGGTACTATCTGTGCGAGAAGCTCTGAATGCTAAGAAAGAAGCGGCTCAAAAAGATAAAAGCTTTTCTGTATCTGATACAGTTGGAAATAGTGATGATGACGATGATGGTGAAGATGAGACTAAATTTGATGCAAAGATGAGGAATCAAGTGCTCAGCAGAAGGAAGGAGATTGGAGATACGCCTTCAAAGCCGACTCAGAAAAAAAAGAGCTCTAGCCTGAAAGGCCGTGAAGAGTCTACGCAAAGGTCTGATGCTGTAAGTAGTGAAGATGAGAAACCAAGGATGGAAAAGTTGTCCTTGAAGAAAAAAGGAATAGGCTCAGAAGCCAAAGCCGAACATATGGAGAAAGGAGACACTGATTTACAGCTTTACAACGCTTCTGAACGCGCCCGGCAGTTGCATAAGTTGAAAAAGCGCAGACTGCAAGGAAATGAGGATTCTGTGTTAGCAAAACTCGAGAAGTTTAAGCAGTCTATCTCTGCAAAACCGTTTACCTCGAGTAATGAACCAGTAGTGTTGACCTCGAGTAGTGAACCAGTTGACAATAAAGAAGAAGATCTCTCTGATTGGAAGAATGTAAAGCTCAAGTTTGCTCCTGAGCGTGGCAAGGATAAAATGTCACGCAGGGATGATCCAGATGCGTATATGGTGGTTGACCCTCTTCTTGAAAAGGGAAAAGAGAAGTTCAACAGAATGCAAGCCAAACAAAAACGAAGGGAGCGAGAATGGTCTGGAAAATCTCTTGCCTGA

Protein Analysis

504

Amino Acids

56.51

Weight (kDa)

7.12

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 15 - 168 1.2e-47 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33060
fragaria_vesca FvH4_2g31480 FvH4_2g31480 FvH4_2g31480 FvH4_2g31480
malus_domestica MD08G1066000.v1.1 MD15G1055400.v1.1
prunus_persica Prupe.1G408500_v2.0.a1
pyrus_communis pycom15g05220
rosa_chinensis RchiOBHm_Chr6g0311311
rosa_laevigata RLG00000010418
rosa_multiflora Rmu_sc0008536.1_g000004 Rmu_sc0030204.1_g000001
rosa_roxburghii Rroxscaffold_7G00157770
rosa_rugosa Rorug06G0387100
rosa_samantha Rh6AG502000 Rh6BG512700 Rh6CG518400 Rh6DG504600
rosa_wichuraiana Rw6G043720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AbsI CCTCGAGG 1 cut(s) 134
AccI GTMKAC 2 cut(s) 5, 1001
AccII CGCG 1 cut(s) 1152
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 3 cut(s) 26, 195, 806
AclWI GGATC 5 cut(s) 194, 467, 480, 698, 1391
AcsI RAATTY 2 cut(s) 610, 887
AcuI CTGAAG 2 cut(s) 657, 714
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 3 cut(s) 14, 111, 768
AfiI CCNNNNNNNGG 2 cut(s) 35, 1367
AgeI ACCGGT 1 cut(s) 218
AluBI AGCT 9 cut(s) 82, 315, 635, 728, 785, 825, 975, 1132, 1348
AluI AGCT 9 cut(s) 82, 315, 635, 728, 785, 825, 975, 1132, 1348
Alw21I GWGCWC 3 cut(s) 317, 918, 977
Alw26I GTCTC 2 cut(s) 875, 1110
AlwI GGATC 5 cut(s) 194, 467, 480, 698, 1391
Ama87I CYCGRG 4 cut(s) 134, 1220, 1261, 1288
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 2 cut(s) 86, 988
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 2 cut(s) 610, 887
AsiGI ACCGGT 1 cut(s) 218
AspLEI GCGC 3 cut(s) 100, 1154, 1182
AspS9I GGNCC 1 cut(s) 65
AsuC2I CCSGG 2 cut(s) 177, 1156
AsuHPI GGTGA 2 cut(s) 309, 884
AvaI CYCGRG 4 cut(s) 134, 1220, 1261, 1288
AvaII GGWCC 1 cut(s) 65
AxyI CCTNAGG 1 cut(s) 90
BamHI GGATCC 1 cut(s) 472
BanII GRGCYC 2 cut(s) 317, 977
BauI CACGAG 1 cut(s) 448
Bbv12I GWGCWC 3 cut(s) 317, 918, 977
BbvI GCAGC 1 cut(s) 553
BccI CCATC 4 cut(s) 164, 171, 863, 1042
BceAI ACGGC 1 cut(s) 975
BcnI CCSGG 2 cut(s) 177, 1156
BcoDI GTCTC 2 cut(s) 875, 1110
BfaI CTAG 4 cut(s) 20, 434, 534, 978
BfoI RGCGCY 1 cut(s) 101
BglI GCCNNNNNGGC 1 cut(s) 987
BglII AGATCT 1 cut(s) 1321
BisI GCNGC 4 cut(s) 26, 196, 567, 807
BlpI GCTNAGC 1 cut(s) 917
BlsI GCNGC 4 cut(s) 27, 197, 568, 808
Bme1390I CCNGG 2 cut(s) 177, 1156
Bme18I GGWCC 1 cut(s) 65
BmeT110I CYCGRG 4 cut(s) 134, 1220, 1261, 1288
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 5 cut(s) 211, 217, 474, 512, 582
BmrFI CCNGG 2 cut(s) 177, 1156
BmsI GCATC 4 cut(s) 758, 883, 1006, 1393
Bpu10I CCTNAGC 1 cut(s) 1362
Bpu1102I GCTNAGC 1 cut(s) 917
BpuEI CTTGAG 1 cut(s) 1334
BpuMI CCSGG 2 cut(s) 177, 1156
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 286, 300, 759, 1043
BsaWI WCCGGW 2 cut(s) 212, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 1367
Bse118I RCCGGY 2 cut(s) 206, 218
Bse1I ACTGG 3 cut(s) 660, 1274, 1301
Bse21I CCTNAGG 1 cut(s) 90
BseAI TCCGGA 1 cut(s) 212
BseDI CCNNGG 4 cut(s) 286, 300, 759, 1043
BseGI GGATG 3 cut(s) 463, 1053, 1399
BseLI CCNNNNNNNGG 2 cut(s) 35, 1367
BseMII CTCAG 6 cut(s) 263, 744, 931, 974, 1098, 1353
BseNI ACTGG 3 cut(s) 660, 1274, 1301
BseXI GCAGC 1 cut(s) 553
Bsh1236I CGCG 1 cut(s) 1152
BshFI GGCC 2 cut(s) 88, 990
BshTI ACCGGT 1 cut(s) 218
BsiHKAI GWGCWC 3 cut(s) 317, 918, 977
BsiHKCI CYCGRG 4 cut(s) 134, 1220, 1261, 1288
BsiSI CCGG 5 cut(s) 177, 207, 213, 219, 1156
BsiWI CGTACG 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 35, 1367
BsmAI GTCTC 2 cut(s) 875, 1110
BsmI GAATGC 2 cut(s) 796, 1464
BsnI GGCC 2 cut(s) 88, 990
BsoBI CYCGRG 4 cut(s) 134, 1220, 1261, 1288
Bsp1286I GDGCHC 3 cut(s) 317, 918, 977
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
Bsp1720I GCTNAGC 1 cut(s) 917
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 3 cut(s) 26, 195, 806
BspANI GGCC 2 cut(s) 88, 990
BspCNI CTCAG 6 cut(s) 264, 745, 930, 973, 1097, 1354
BspEI TCCGGA 1 cut(s) 212
BspFNI CGCG 1 cut(s) 1152
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 5 cut(s) 211, 217, 474, 512, 582
BspPI GGATC 5 cut(s) 194, 467, 480, 698, 1391
BsrFI RCCGGY 2 cut(s) 206, 218
BsrI ACTGG 3 cut(s) 660, 1274, 1301
BssAI RCCGGY 2 cut(s) 206, 218
BssECI CCNNGG 4 cut(s) 286, 300, 759, 1043
BssMI GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 3 cut(s) 300, 759, 1043
Bst2BI CACGAG 1 cut(s) 448
Bst4CI ACNGT 5 cut(s) 10, 287, 618, 844, 1254
Bst6I CTCTTC 3 cut(s) 636, 990, 1431
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 313, 1464
BstDEI CTNAG 8 cut(s) 90, 272, 753, 795, 917, 960, 1084, 1362
BstDSI CCRYGG 2 cut(s) 286, 300
BstF5I GGATG 3 cut(s) 463, 1053, 1399
BstFNI CGCG 1 cut(s) 1152
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 3 cut(s) 100, 1154, 1182
BstKTI GATC 6 cut(s) 202, 463, 475, 706, 1324, 1399
BstMAI GTCTC 2 cut(s) 875, 1110
BstMBI GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
BstMWI GCNNNNNNNGC 5 cut(s) 25, 791, 952, 987, 1186
BstSCI CCNGG 2 cut(s) 175, 1154
BstUI CGCG 1 cut(s) 1152
BstV1I GCAGC 1 cut(s) 553
BstX2I RGATCY 2 cut(s) 472, 1321
BstYI RGATCY 2 cut(s) 472, 1321
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 2 cut(s) 88, 990
BtgI CCRYGG 2 cut(s) 286, 300
BtsCI GGATG 3 cut(s) 463, 1053, 1399
BtsIMutI CAGTG 1 cut(s) 1119
Cac8I GCNNGC 2 cut(s) 313, 1464
CciI TCATGA 1 cut(s) 688
CfoI GCGC 3 cut(s) 100, 1154, 1182
Cfr10I RCCGGY 2 cut(s) 206, 218
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 3 cut(s) 13, 110, 767
CspAI ACCGGT 1 cut(s) 218
CviAII CATG 3 cut(s) 62, 301, 689
CviQI GTAC 3 cut(s) 13, 110, 767
DdeI CTNAG 8 cut(s) 90, 272, 753, 795, 917, 960, 1084, 1362
DpnI GATC 6 cut(s) 201, 462, 474, 705, 1323, 1398
DpnII GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
Eam1104I CTCTTC 3 cut(s) 636, 990, 1431
EarI CTCTTC 3 cut(s) 636, 990, 1431
Ecl136II GAGCTC 2 cut(s) 315, 975
Eco130I CCWWGG 3 cut(s) 300, 759, 1043
Eco24I GRGCYC 2 cut(s) 317, 977
Eco47I GGWCC 1 cut(s) 65
Eco53kI GAGCTC 2 cut(s) 315, 975
Eco57I CTGAAG 2 cut(s) 657, 714
Eco81I CCTNAGG 1 cut(s) 90
Eco88I CYCGRG 4 cut(s) 134, 1220, 1261, 1288
EcoICRI GAGCTC 2 cut(s) 315, 975
EcoT14I CCWWGG 3 cut(s) 300, 759, 1043
EcoT38I GRGCYC 2 cut(s) 317, 977
ErhI CCWWGG 3 cut(s) 300, 759, 1043
FaeI CATG 3 cut(s) 65, 304, 692
FalI AAGNNNNNCTT 2 cut(s) 1046, 1078
FatI CATG 3 cut(s) 61, 300, 688
FauNDI CATATG 1 cut(s) 1104
FblI GTMKAC 2 cut(s) 5, 1001
Fnu4HI GCNGC 4 cut(s) 26, 196, 567, 807
FokI GGATG 3 cut(s) 470, 1060, 1406
FriOI GRGCYC 2 cut(s) 317, 977
Fsp4HI GCNGC 4 cut(s) 26, 196, 567, 807
FspBI CTAG 4 cut(s) 20, 434, 534, 978
GlaI GCGC 3 cut(s) 99, 1153, 1181
GluI GCNGC 4 cut(s) 26, 196, 567, 807
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 2 cut(s) 88, 990
HapII CCGG 5 cut(s) 177, 207, 213, 219, 1156
HhaI GCGC 3 cut(s) 100, 1154, 1182
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 65, 304, 692
Hin6I GCGC 3 cut(s) 98, 1152, 1180
HinP1I GCGC 3 cut(s) 98, 1152, 1180
HincII GTYRAC 5 cut(s) 6, 445, 1284, 1306, 1420
HindII GTYRAC 5 cut(s) 6, 445, 1284, 1306, 1420
HindIII AAGCTT 2 cut(s) 726, 823
HinfI GANTC 7 cut(s) 410, 560, 755, 907, 958, 998, 1202
HpaII CCGG 5 cut(s) 177, 207, 213, 219, 1156
HphI GGTGA 2 cut(s) 309, 884
Hpy166II GTNNAC 9 cut(s) 6, 13, 445, 1002, 1257, 1284, 1298, 1306, 1420
Hpy188III TCNNGA 8 cut(s) 213, 470, 689, 1222, 1361, 1400, 1430, 1497
Hpy8I GTNNAC 9 cut(s) 6, 13, 445, 1002, 1257, 1284, 1298, 1306, 1420
Hpy99I CGWCG 3 cut(s) 10, 77, 80
HpyAV CCTTC 5 cut(s) 712, 918, 922, 957, 1473
HpyCH4III ACNGT 5 cut(s) 10, 287, 618, 844, 1254
HpyCH4IV ACGT 3 cut(s) 15, 75, 693
HpyCH4V TGCA 5 cut(s) 896, 1165, 1189, 1247, 1462
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 791, 952, 987, 1186
HpyF3I CTNAG 8 cut(s) 90, 272, 753, 795, 917, 960, 1084, 1362
HpySE526I ACGT 3 cut(s) 15, 75, 693
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 65, 304, 692
HspAI GCGC 3 cut(s) 98, 1152, 1180
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
LmnI GCTCC 4 cut(s) 215, 484, 1363, 1483
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 4 cut(s) 758, 883, 1006, 1393
MaeI CTAG 4 cut(s) 20, 434, 534, 978
MaeII ACGT 3 cut(s) 15, 75, 693
MaeIII GTNAC 3 cut(s) 140, 400, 1383
MalI GATC 6 cut(s) 201, 462, 474, 705, 1323, 1398
MboI GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
MflI RGATCY 2 cut(s) 472, 1321
MhlI GDGCHC 3 cut(s) 317, 918, 977
MluCI AATT 4 cut(s) 322, 605, 610, 887
MlyI GAGTC 3 cut(s) 764, 952, 1007
MmeI TCCRAC 1 cut(s) 826
MroI TCCGGA 1 cut(s) 212
MseI TTAA 3 cut(s) 428, 678, 1230
MspI CCGG 5 cut(s) 177, 207, 213, 219, 1156
MspR9I CCNGG 2 cut(s) 177, 1156
Mva1269I GAATGC 2 cut(s) 796, 1464
MvnI CGCG 1 cut(s) 1152
MwoI GCNNNNNNNGC 5 cut(s) 25, 791, 952, 987, 1186
NciI CCSGG 2 cut(s) 177, 1156
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 1104
NdeII GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
NlaIII CATG 3 cut(s) 65, 304, 692
NlaIV GGNNCC 5 cut(s) 211, 217, 474, 512, 582
NmuCI GTSAC 1 cut(s) 1383
PaeR7I CTCGAG 4 cut(s) 134, 1220, 1261, 1288
PagI TCATGA 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 1483
PctI GAATGC 2 cut(s) 796, 1464
PfeI GAWTC 4 cut(s) 410, 560, 907, 1202
Pfl23II CGTACG 1 cut(s) 109
PinAI ACCGGT 1 cut(s) 218
PkrI GCNGC 4 cut(s) 27, 197, 568, 808
PleI GAGTC 3 cut(s) 763, 952, 1006
PpsI GAGTC 3 cut(s) 763, 952, 1006
Ppu21I YACGTR 1 cut(s) 16
Psp124BI GAGCTC 2 cut(s) 317, 977
PspLI CGTACG 1 cut(s) 109
PspN4I GGNNCC 5 cut(s) 211, 217, 474, 512, 582
PspPI GGNCC 1 cut(s) 65
PspXI VCTCGAGB 3 cut(s) 134, 1261, 1288
PsuI RGATCY 2 cut(s) 472, 1321
RsaI GTAC 3 cut(s) 14, 111, 768
RsaNI GTAC 3 cut(s) 13, 110, 767
SacI GAGCTC 2 cut(s) 317, 977
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 428, 678, 1230
SatI GCNGC 4 cut(s) 26, 196, 567, 807
Sau3AI GATC 6 cut(s) 199, 460, 472, 703, 1321, 1396
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 3 cut(s) 764, 952, 1007
ScrFI CCNGG 2 cut(s) 177, 1156
SduI GDGCHC 3 cut(s) 317, 918, 977
SfaNI GCATC 4 cut(s) 758, 883, 1006, 1393
Sfr274I CTCGAG 4 cut(s) 134, 1220, 1261, 1288
SinI GGWCC 1 cut(s) 65
SlaI CTCGAG 4 cut(s) 134, 1220, 1261, 1288
SmlI CTYRAG 5 cut(s) 134, 1220, 1261, 1288, 1349
SmoI CTYRAG 5 cut(s) 134, 1220, 1261, 1288, 1349
Sse9I AATT 4 cut(s) 322, 605, 610, 887
SsiI CCGC 3 cut(s) 26, 195, 806
SspI AATATT 1 cut(s) 489
SspMI CTAG 4 cut(s) 20, 434, 534, 978
SstI GAGCTC 2 cut(s) 317, 977
StyD4I CCNGG 2 cut(s) 175, 1154
StyI CCWWGG 3 cut(s) 300, 759, 1043
TaaI ACNGT 5 cut(s) 10, 287, 618, 844, 1254
TaiI ACGT 3 cut(s) 18, 78, 696
TasI AATT 4 cut(s) 322, 605, 610, 887
TauI GCSGC 3 cut(s) 28, 198, 809
TfiI GAWTC 4 cut(s) 410, 560, 907, 1202
Tru1I TTAA 3 cut(s) 428, 678, 1230
Tru9I TTAA 3 cut(s) 428, 678, 1230
TscAI CASTG 1 cut(s) 1126
TseFI GTSAC 1 cut(s) 1383
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 1383
TspDTI ATGAA 1 cut(s) 1284
TspGWI ACGGA 2 cut(s) 97, 127
TspRI CASTG 1 cut(s) 1126
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 2 cut(s) 610, 887
XhoI CTCGAG 4 cut(s) 134, 1220, 1261, 1288
XmiI GTMKAC 2 cut(s) 5, 1001
XspI CTAG 4 cut(s) 20, 434, 534, 978
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.