RLG00000010418

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
1456572 .. 1460515
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010418

Sequence Viewer

Length: 1491 bp
ATGTCGTCGATATACGTCTTAGAACCACCGACTAGGGGCAAGGTGGTGCTACAAACGACCCATGGGCCGCTCGACATCGAGCTCTGGCCCAAAGAGGCCCCCAAGGCCGCCCGCAACTTCGTCCAGCTCTGCCTCGAAGGCTACTACAACAACACCATCTTCCACCGCATCATCAAAGGCTTTCTCGTTCAGGGCGGCGACCCCACCGCCACCGGCGAAGGCGGCGAGAGTATCTACGGCGGGCTTTTCTCCGACGAGTTTCACTCGCGGCTGAGATTCAAGCATAGAGGTTTAGTTGCTTGTGCAAATGCCAATAAGCCTAATACGAATGGGAGCCAGTTCTTCATGAACTTGGACCGGTGCGATTGGCTTGACAAGAAGCACACGATTTTCGGAAAGGTGACTGGTGATTCCATATACAATCTGGTGAGGTTGGGTGAGATTGAAACCGACAAGGAGGACCGGCCTTTGGACCCGCCGCCGAGGATATTATCAGTAGAGGTACTGTGGAATCCCTTTGATGATATTGTCCCAAGAGTGCTTTCACGTTCTTTGGTCCAGTCCACAGATGATACTGACAACAAGGATACGAAGAAGAAAGCTGTGAAAAAGCTGAACTTGCTGTCCTTTGGAGAAGAAGCTGAAGAGGAGGAGAGAGAATTGGCAACTGTAAAGACAAAAATAAAGAGCAGTCATGATCTATTGGATGATCCTCGTCTTTTGAAGGAAGAAGTTCCAATTAACGAAGTGGATCCCAAAACAAGGCAGATGCAGTTATCTGTCAGAGAAGCTCTACAGTCAAAGAAAGAAGACCCCTCAAAAGACTCTGAATCAAAATTTTATAATTCTCTTAATTACAGTGATAATGATGATGATGATGATGATAATGAGTCCAATTTTGATGCACGAATGCGTCATCAAATACTCAGGAAACGGAAAGAGTTGGGAGATCTCCCACCAAAGCCAAAGTTGCCGAATGGGAGCTCTAGCCCAAAGCAGCGTGAAACATCTACAACAAGGTCCAAGGCTGAAAGCATTGATGATGACCAACCAAGGGTAGAAAAGCTGTCATTGAAGAAAAAAGGGATAGGATCAGAGGCCAAAGCTGAGCGCCTGGCCAATGCTGATACAGACTTACAGCTGTTTAGTGAAGCTGAAAGAGGAAGACAATTGCAGAAACAGAAGAAGCGTAGAAACCAAGGACGAGAAGAAGAAACAATAGCAAGACTTGAGAAGTTTAAGAAGACCCTGTGTGTGAAGCCCACAGCCCCAGATAGTGAATCTGGAGGTGGCGATGGTGAAGATTTATCTGATTGGCAAAAATCTCGGTTAAAATTTGCTCCTGAGACTGGCAAGATGACTCGCACTGAGGACATAAATGATTACGTTGTGCTTGACCCTCTTTTGGAGAAGGGGAAAGAGAAGTTCAACCGGATGCAAGCAAAGCAAAAACGAAGAGAGCGAGAATGGGCCGGCAAATCTCTTACTTGA

Protein Analysis

497

Amino Acids

56.5

Weight (kDa)

7.08

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 15 - 168 3.7e-46 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011445)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
AccBSI CCGCTC 1 cut(s) 70
AccII CGCG 1 cut(s) 268
AclWI GGATC 4 cut(s) 704, 746, 759, 1099
AcoI YGGCCR 1 cut(s) 1116
AcsI RAATTY 2 cut(s) 836, 1334
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 6 cut(s) 35, 469, 762, 1054, 1349, 1405
AgeI ACCGGT 1 cut(s) 357
AgsI TTSAA 5 cut(s) 280, 446, 724, 1075, 1429
AjnI CCWGG 1 cut(s) 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
Alw21I GWGCWC 2 cut(s) 84, 986
Alw26I GTCTC 1 cut(s) 1340
AlwI GGATC 4 cut(s) 704, 746, 759, 1099
AoxI GGCC 8 cut(s) 65, 86, 96, 105, 464, 1098, 1116, 1470
ApeKI GCWGC 1 cut(s) 997
ApoI RAATTY 2 cut(s) 836, 1334
AsiGI ACCGGT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 1 cut(s) 1113
AspS9I GGNCC 9 cut(s) 65, 87, 97, 355, 460, 472, 556, 1020, 1470
AsuHPI GGTGA 5 cut(s) 412, 419, 439, 449, 1310
AvaII GGWCC 5 cut(s) 355, 460, 472, 556, 1020
BalI TGGCCA 1 cut(s) 1118
BamHI GGATCC 1 cut(s) 751
BanII GRGCYC 2 cut(s) 84, 986
BbsI GAAGAC 3 cut(s) 816, 1171, 1250
Bbv12I GWGCWC 2 cut(s) 84, 986
BbvI GCAGC 1 cut(s) 1009
BccI CCATC 2 cut(s) 164, 1289
BceAI ACGGC 1 cut(s) 253
BcgI CGANNNNNNTGC 2 cut(s) 1307, 1341
BciT130I CCWGG 1 cut(s) 1115
BciVI GTATCC 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 1340
BfaI CTAG 2 cut(s) 33, 987
BfmI CTRYAG 1 cut(s) 794
BfoI RGCGCY 1 cut(s) 1114
BfuI GTATCC 1 cut(s) 580
BglI GCCNNNNNGGC 2 cut(s) 104, 138
BglII AGATCT 1 cut(s) 949
BisI GCNGC 7 cut(s) 68, 108, 196, 223, 269, 479, 998
BlpI GCTNAGC 1 cut(s) 1107
BlsI GCNGC 7 cut(s) 69, 109, 197, 224, 270, 480, 999
Bme1390I CCNGG 1 cut(s) 1115
Bme18I GGWCC 5 cut(s) 355, 460, 472, 556, 1020
BmgT120I GGNCC 9 cut(s) 65, 87, 97, 355, 460, 472, 556, 1020, 1470
BmiI GGNNCC 4 cut(s) 99, 335, 474, 753
BmrFI CCNGG 1 cut(s) 1115
BmsI GCATC 4 cut(s) 177, 759, 892, 1425
BpiI GAAGAC 3 cut(s) 816, 1171, 1250
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BpmI CTGGAG 1 cut(s) 1305
Bpu1102I GCTNAGC 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 1250
BsaJI CCNNGG 6 cut(s) 61, 102, 482, 1023, 1052, 1198
BsaWI WCCGGW 2 cut(s) 357, 1431
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 469, 762, 1054, 1349, 1405
Bse118I RCCGGY 4 cut(s) 212, 357, 462, 1472
Bse1I ACTGG 4 cut(s) 337, 409, 559, 1354
BseBI CCWGG 1 cut(s) 1115
BseDI CCNNGG 6 cut(s) 61, 102, 482, 1023, 1052, 1198
BseGI GGATG 2 cut(s) 712, 1440
BseLI CCNNNNNNNGG 6 cut(s) 35, 469, 762, 1054, 1349, 1405
BseMII CTCAG 5 cut(s) 263, 940, 1098, 1335, 1359
BseNI ACTGG 4 cut(s) 337, 409, 559, 1354
BseRI GAGGAG 2 cut(s) 662, 665
BseXI GCAGC 1 cut(s) 1009
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 8 cut(s) 67, 88, 98, 107, 466, 1100, 1118, 1472
BshTI ACCGGT 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 84, 986
BsiSI CCGG 5 cut(s) 213, 358, 463, 1432, 1473
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 6 cut(s) 35, 469, 762, 1054, 1349, 1405
BsmAI GTCTC 1 cut(s) 1340
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 8 cut(s) 67, 88, 98, 107, 466, 1100, 1118, 1472
Bsp1286I GDGCHC 2 cut(s) 84, 986
Bsp143I GATC 5 cut(s) 697, 709, 751, 949, 1091
Bsp1720I GCTNAGC 1 cut(s) 1107
Bsp19I CCATGG 1 cut(s) 61
BspANI GGCC 8 cut(s) 67, 88, 98, 107, 466, 1100, 1118, 1472
BspCNI CTCAG 5 cut(s) 264, 939, 1099, 1336, 1360
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 2 cut(s) 345, 694
BspLI GGNNCC 4 cut(s) 99, 335, 474, 753
BspPI GGATC 4 cut(s) 704, 746, 759, 1099
BsrBI CCGCTC 1 cut(s) 70
BsrFI RCCGGY 4 cut(s) 212, 357, 462, 1472
BsrI ACTGG 4 cut(s) 337, 409, 559, 1354
BssAI RCCGGY 4 cut(s) 212, 357, 462, 1472
BssECI CCNNGG 6 cut(s) 61, 102, 482, 1023, 1052, 1198
BssMI GATC 5 cut(s) 697, 709, 751, 949, 1091
BssT1I CCWWGG 5 cut(s) 61, 102, 1023, 1052, 1198
Bst2UI CCWGG 1 cut(s) 1115
Bst4CI ACNGT 4 cut(s) 507, 670, 798, 860
Bst6I CTCTTC 2 cut(s) 639, 1450
BstC8I GCNNGC 4 cut(s) 112, 242, 1440, 1474
BstDEI CTNAG 6 cut(s) 19, 272, 926, 1107, 1344, 1368
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 712, 1440
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 1 cut(s) 1114
BstHHI GCGC 1 cut(s) 1113
BstKTI GATC 5 cut(s) 700, 712, 754, 952, 1094
BstMAI GTCTC 1 cut(s) 1340
BstMBI GATC 5 cut(s) 697, 709, 751, 949, 1091
BstMWI GCNNNNNNNGC 6 cut(s) 104, 138, 222, 619, 970, 1444
BstNI CCWGG 1 cut(s) 1115
BstSCI CCNGG 1 cut(s) 1113
BstSFI CTRYAG 1 cut(s) 794
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 1009
BstV2I GAAGAC 3 cut(s) 816, 1171, 1250
BstX2I RGATCY 2 cut(s) 751, 949
BstYI RGATCY 2 cut(s) 751, 949
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 8 cut(s) 67, 88, 98, 107, 466, 1100, 1118, 1472
BtgI CCRYGG 1 cut(s) 61
BtgZI GCGATG 1 cut(s) 1308
BtsCI GGATG 2 cut(s) 712, 1440
BtsIMutI CAGTG 2 cut(s) 865, 1365
Cac8I GCNNGC 4 cut(s) 112, 242, 1440, 1474
CciI TCATGA 2 cut(s) 345, 694
CfoI GCGC 1 cut(s) 1113
Cfr10I RCCGGY 4 cut(s) 212, 357, 462, 1472
Cfr13I GGNCC 9 cut(s) 65, 87, 97, 355, 460, 472, 556, 1020, 1470
CseI GACGC 1 cut(s) 902
Csp6I GTAC 1 cut(s) 503
CspAI ACCGGT 1 cut(s) 357
CviAII CATG 3 cut(s) 62, 346, 695
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 6 cut(s) 19, 272, 926, 1107, 1344, 1368
DpnI GATC 5 cut(s) 699, 711, 753, 951, 1093
DpnII GATC 5 cut(s) 697, 709, 751, 949, 1091
EaeI YGGCCR 1 cut(s) 1116
Eam1104I CTCTTC 2 cut(s) 639, 1450
EarI CTCTTC 2 cut(s) 639, 1450
Ecl136II GAGCTC 2 cut(s) 82, 984
Eco130I CCWWGG 5 cut(s) 61, 102, 1023, 1052, 1198
Eco24I GRGCYC 2 cut(s) 84, 986
Eco47I GGWCC 5 cut(s) 355, 460, 472, 556, 1020
Eco53kI GAGCTC 2 cut(s) 82, 984
Eco57I CTGAAG 1 cut(s) 663
EcoICRI GAGCTC 2 cut(s) 82, 984
EcoO109I RGGNCCY 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 1113
EcoT14I CCWWGG 5 cut(s) 61, 102, 1023, 1052, 1198
EcoT38I GRGCYC 2 cut(s) 84, 986
ErhI CCWWGG 5 cut(s) 61, 102, 1023, 1052, 1198
FaeI CATG 3 cut(s) 65, 349, 698
FaiI YATR 9 cut(s) 13, 63, 285, 347, 416, 418, 696, 843, 1376
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 61, 345, 694
FauI CCCGC 3 cut(s) 119, 233, 483
Fnu4HI GCNGC 7 cut(s) 68, 108, 196, 223, 269, 479, 998
FokI GGATG 2 cut(s) 719, 1447
FriOI GRGCYC 2 cut(s) 84, 986
Fsp4HI GCNGC 7 cut(s) 68, 108, 196, 223, 269, 479, 998
FspBI CTAG 2 cut(s) 33, 987
GlaI GCGC 1 cut(s) 1112
GluI GCNGC 7 cut(s) 68, 108, 196, 223, 269, 479, 998
GsuI CTGGAG 1 cut(s) 1305
HaeII RGCGCY 1 cut(s) 1114
HaeIII GGCC 8 cut(s) 67, 88, 98, 107, 466, 1100, 1118, 1472
HapII CCGG 5 cut(s) 213, 358, 463, 1432, 1473
HgaI GACGC 1 cut(s) 902
HhaI GCGC 1 cut(s) 1113
Hin1II CATG 3 cut(s) 65, 349, 698
Hin6I GCGC 1 cut(s) 1111
HinP1I GCGC 1 cut(s) 1111
HinfI GANTC 8 cut(s) 276, 410, 511, 824, 830, 890, 1280, 1360
HpaII CCGG 5 cut(s) 213, 358, 463, 1432, 1473
HphI GGTGA 5 cut(s) 412, 419, 439, 449, 1310
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 6 cut(s) 253, 395, 785, 829, 1096, 1312
Hpy188III TCNNGA 5 cut(s) 346, 695, 928, 1284, 1343
Hpy8I GTNNAC 1 cut(s) 564
Hpy99I CGWCG 2 cut(s) 10, 257
HpyAV CCTTC 4 cut(s) 131, 212, 718, 1405
HpyCH4III ACNGT 4 cut(s) 507, 670, 798, 860
HpyCH4IV ACGT 3 cut(s) 15, 547, 1386
HpyCH4V TGCA 5 cut(s) 305, 772, 905, 1174, 1438
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 138, 222, 619, 970, 1444
HpyF3I CTNAG 6 cut(s) 19, 272, 926, 1107, 1344, 1368
HpySE526I ACGT 3 cut(s) 15, 547, 1386
Hsp92II CATG 3 cut(s) 65, 349, 698
HspAI GCGC 1 cut(s) 1111
KroI GCCGGC 1 cut(s) 1472
KroNI GCCGGC 1 cut(s) 1474
Kzo9I GATC 5 cut(s) 697, 709, 751, 949, 1091
LmnI GCTCC 3 cut(s) 333, 981, 1345
Lsp1109I GCAGC 1 cut(s) 1009
LweI GCATC 4 cut(s) 177, 759, 892, 1425
MaeI CTAG 2 cut(s) 33, 987
MaeII ACGT 3 cut(s) 15, 547, 1386
MaeIII GTNAC 1 cut(s) 400
MalI GATC 5 cut(s) 699, 711, 753, 951, 1093
MbiI CCGCTC 1 cut(s) 70
MboI GATC 5 cut(s) 697, 709, 751, 949, 1091
MfeI CAATTG 1 cut(s) 1169
MflI RGATCY 2 cut(s) 751, 949
MhlI GDGCHC 2 cut(s) 84, 986
MlsI TGGCCA 1 cut(s) 1118
MluCI AATT 8 cut(s) 659, 738, 836, 844, 853, 895, 1169, 1334
MluNI TGGCCA 1 cut(s) 1118
MlyI GAGTC 3 cut(s) 818, 899, 1354
MmeI TCCRAC 1 cut(s) 276
Mox20I TGGCCA 1 cut(s) 1118
MroNI GCCGGC 1 cut(s) 1472
MroXI GAANNNNTTC 1 cut(s) 732
MscI TGGCCA 1 cut(s) 1118
MseI TTAA 4 cut(s) 741, 852, 1239, 1331
Msp20I TGGCCA 1 cut(s) 1118
MspA1I CMGCKG 1 cut(s) 1141
MspI CCGG 5 cut(s) 213, 358, 463, 1432, 1473
MspR9I CCNGG 1 cut(s) 1115
MunI CAATTG 1 cut(s) 1169
Mva1269I GAATGC 1 cut(s) 915
MvaI CCWGG 1 cut(s) 1115
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 6 cut(s) 104, 138, 222, 619, 970, 1444
NaeI GCCGGC 1 cut(s) 1474
NcoI CCATGG 1 cut(s) 61
NdeII GATC 5 cut(s) 697, 709, 751, 949, 1091
NgoMIV GCCGGC 1 cut(s) 1472
NlaIII CATG 3 cut(s) 65, 349, 698
NlaIV GGNNCC 4 cut(s) 99, 335, 474, 753
NmeAIII GCCGAG 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 400
PagI TCATGA 2 cut(s) 345, 694
PcsI WCGNNNNNNNCGW 1 cut(s) 1459
PctI GAATGC 1 cut(s) 915
PdiI GCCGGC 1 cut(s) 1474
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 5 cut(s) 276, 410, 511, 830, 1280
PinAI ACCGGT 1 cut(s) 357
PkrI GCNGC 7 cut(s) 69, 109, 197, 224, 270, 480, 999
PleI GAGTC 3 cut(s) 818, 898, 1354
PpsI GAGTC 3 cut(s) 818, 898, 1354
PsiI TTATAA 1 cut(s) 843
Psp124BI GAGCTC 2 cut(s) 84, 986
Psp6I CCWGG 1 cut(s) 1113
PspGI CCWGG 1 cut(s) 1113
PspN4I GGNNCC 4 cut(s) 99, 335, 474, 753
PspPI GGNCC 9 cut(s) 65, 87, 97, 355, 460, 472, 556, 1020, 1470
PsuI RGATCY 2 cut(s) 751, 949
PvuII CAGCTG 1 cut(s) 1141
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
SacI GAGCTC 2 cut(s) 84, 986
SaqAI TTAA 4 cut(s) 741, 852, 1239, 1331
SatI GCNGC 7 cut(s) 68, 108, 196, 223, 269, 479, 998
Sau3AI GATC 5 cut(s) 697, 709, 751, 949, 1091
Sau96I GGNCC 9 cut(s) 65, 87, 97, 355, 460, 472, 556, 1020, 1470
SchI GAGTC 3 cut(s) 818, 899, 1354
ScrFI CCNGG 1 cut(s) 1115
SduI GDGCHC 2 cut(s) 84, 986
SfaNI GCATC 4 cut(s) 177, 759, 892, 1425
SfcI CTRYAG 1 cut(s) 794
SfiI GGCCNNNNNGGCC 1 cut(s) 104
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 5 cut(s) 355, 460, 472, 556, 1020
SmlI CTYRAG 1 cut(s) 1229
SmoI CTYRAG 1 cut(s) 1229
Sse9I AATT 8 cut(s) 659, 738, 836, 844, 853, 895, 1169, 1334
SspMI CTAG 2 cut(s) 33, 987
SstI GAGCTC 2 cut(s) 84, 986
StyD4I CCNGG 1 cut(s) 1113
StyI CCWWGG 5 cut(s) 61, 102, 1023, 1052, 1198
TaaI ACNGT 4 cut(s) 507, 670, 798, 860
TaiI ACGT 3 cut(s) 18, 550, 1389
TaqI TCGA 4 cut(s) 8, 72, 78, 135
TasI AATT 8 cut(s) 659, 738, 836, 844, 853, 895, 1169, 1334
TauI GCSGC 6 cut(s) 70, 110, 198, 225, 271, 481
TfiI GAWTC 5 cut(s) 276, 410, 511, 830, 1280
Tru1I TTAA 4 cut(s) 741, 852, 1239, 1331
Tru9I TTAA 4 cut(s) 741, 852, 1239, 1331
TscAI CASTG 2 cut(s) 865, 1372
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 997
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 334, 362
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 2 cut(s) 865, 1372
VpaK11BI GGWCC 5 cut(s) 355, 460, 472, 556, 1020
XapI RAATTY 2 cut(s) 836, 1334
XcmI CCANNNNNNNNNTGG 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 33, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.