Rh6BG512700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011445
Physical Location & Seq
Forward (+)
70819459 .. 70823882
4424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG512700.1

Sequence Viewer

Length: 1062 bp
ATGTCGTCGATATACGTCTTAGAACCACCGACTAGGGGCAAGGTGGTGCTGCAAACGACCCATGGGCCTCTCGACATCGAGCTCTGGCCCAAAGAGGCCCCCAAGGCCGCCCGCAACTTCGTCCAGCTCTGCCTCGAAGGCTACTACAACAACACCATCTTCCACCGCATCATCAAAGGCTTTCTCGTTCAGGGCGGCGACCCCACCGCCACCGGCGAAGGCGGCGAGAGTATTTACGGCGGTCTTTTCTCCGACGAGTTTCACTCGCGGCTGAGATTCAAGCATAGAGGTTTAGTTGCTTGTGCAAATGCCAATAAGCCTAATACGAATGGGAGCCAGTTCTTCATGAACTTGGACCGGTGCGATTGGCTTGACAAGAAGCACACGATTTTCGGAAAGGTGACTGGTGATTCCATATACAATCTAGTGAGGTTGGGTGAGATTGAAACCGACAAGGAGGACCGGCCTTTGGACCCGCCACCGAGGATATTATCAGTAGAGGTACTGTGGAATCCCTTTGATGATATTGTCCCAAGAGTGCTTTCACGTTCTTTGGTCCAGTCCACAGATGATACTGACAACAAGGATACAAAGAAGAAAGCTGTGAAAAAGCTGAACTTGCTTTCCTTTGGAGAAGAAGCTGAAGAGGAGGAGAGAGAATTGGCAACTGTAAAGACAAAAATAAAGAGCAGTCATGATCTATTGGATGATCCTCGTCTTTTGAAGGAAGAAGTTCCAATTAACGAAGTGGATCCCAAAACAAGGCAGATGCAGTTATCTGTCAGAGAAGCTCTACAGTCAAAGAAAGAAGACCCCTCAAAAGACTCCGAATCAAAATTTTATAATTCTCTTAATTACAGTGATAATGATGATGATGATGATGATAATGAGTCCAATTTTGATGCACGAATGCGTCATCAAATACTCAGGAAACGGAAAGAGTTGGGAGATCTCCCACCAAAGCCAAAGTTGCCGAATGGTACCCATTTGTCCTCACTCAATGTATATCAGTCTGTAAAGTTTTGTCTATCTCCTCTTCACATGGAATATGTCTTGCATTAA

Protein Analysis

353

Amino Acids

40.27

Weight (kDa)

5.76

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 15 - 168 1.8e-46 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011445)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33060
fragaria_vesca FvH4_2g31480 FvH4_2g31480 FvH4_2g31480 FvH4_2g31480
malus_domestica MD08G1066000.v1.1 MD15G1055400.v1.1
prunus_persica Prupe.1G408500_v2.0.a1
pyrus_communis pycom15g05220
rosa_chinensis RchiOBHm_Chr6g0311311
rosa_laevigata RLG00000010418
rosa_multiflora Rmu_sc0008536.1_g000004 Rmu_sc0030204.1_g000001
rosa_roxburghii Rroxscaffold_7G00157770
rosa_rugosa Rorug06G0387100
rosa_samantha Rh6AG502000 Rh6BG512700 Rh6CG518400 Rh6DG504600
rosa_wichuraiana Rw6G043720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc65I GGTACC 1 cut(s) 980
AccB1I GGYRCC 1 cut(s) 980
AccII CGCG 1 cut(s) 268
AciI CCGC 9 cut(s) 108, 112, 166, 195, 207, 222, 240, 268, 476
AclWI GGATC 3 cut(s) 704, 746, 759
AcsI RAATTY 1 cut(s) 836
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 2 cut(s) 504, 982
AfiI CCNNNNNNNGG 3 cut(s) 35, 469, 762
AgeI ACCGGT 1 cut(s) 357
AgsI TTSAA 3 cut(s) 280, 446, 724
AjuI GAANNNNNNNTTGG 2 cut(s) 526, 558
AloI GAACNNNNNNTCC 2 cut(s) 608, 640
AluBI AGCT 6 cut(s) 82, 127, 602, 613, 641, 791
AluI AGCT 6 cut(s) 82, 127, 602, 613, 641, 791
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 3 cut(s) 704, 746, 759
AoxI GGCC 5 cut(s) 65, 86, 96, 105, 464
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 836
AsiGI ACCGGT 1 cut(s) 357
Asp700I GAANNNNTTC 1 cut(s) 732
Asp718I GGTACC 1 cut(s) 980
AspS9I GGNCC 7 cut(s) 65, 87, 97, 355, 460, 472, 556
AsuHPI GGTGA 3 cut(s) 412, 419, 449
AvaII GGWCC 4 cut(s) 355, 460, 472, 556
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 980
BanII GRGCYC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 164
BceAI ACGGC 1 cut(s) 253
BciVI GTATCC 1 cut(s) 580
BfaI CTAG 2 cut(s) 33, 425
BfmI CTRYAG 1 cut(s) 794
BfuI GTATCC 1 cut(s) 580
BglI GCCNNNNNGGC 2 cut(s) 104, 138
BglII AGATCT 1 cut(s) 949
BisI GCNGC 5 cut(s) 50, 108, 196, 223, 269
BlsI GCNGC 5 cut(s) 51, 109, 197, 224, 270
Bme18I GGWCC 4 cut(s) 355, 460, 472, 556
BmgT120I GGNCC 7 cut(s) 65, 87, 97, 355, 460, 472, 556
BmiI GGNNCC 5 cut(s) 99, 335, 474, 753, 982
BmsI GCATC 3 cut(s) 177, 759, 892
BpiI GAAGAC 1 cut(s) 816
BplI GAGNNNNNCTC 2 cut(s) 248, 280
BsaJI CCNNGG 3 cut(s) 61, 102, 482
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 469, 762
Bse118I RCCGGY 3 cut(s) 212, 357, 462
Bse1I ACTGG 3 cut(s) 337, 409, 559
BseDI CCNNGG 3 cut(s) 61, 102, 482
BseGI GGATG 1 cut(s) 712
BseLI CCNNNNNNNGG 3 cut(s) 35, 469, 762
BseMII CTCAG 2 cut(s) 263, 940
BseNI ACTGG 3 cut(s) 337, 409, 559
BseRI GAGGAG 3 cut(s) 662, 665, 1023
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 5 cut(s) 67, 88, 98, 107, 466
BshNI GGYRCC 1 cut(s) 980
BshTI ACCGGT 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 3 cut(s) 213, 358, 463
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 3 cut(s) 35, 469, 762
BsmFI GGGAC 1 cut(s) 515
BsmI GAATGC 1 cut(s) 915
BsnI GGCC 5 cut(s) 67, 88, 98, 107, 466
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 4 cut(s) 697, 709, 751, 949
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 9 cut(s) 108, 112, 166, 195, 207, 222, 240, 268, 476
BspANI GGCC 5 cut(s) 67, 88, 98, 107, 466
BspCNI CTCAG 2 cut(s) 264, 939
BspFNI CGCG 1 cut(s) 268
BspHI TCATGA 2 cut(s) 345, 694
BspLI GGNNCC 5 cut(s) 99, 335, 474, 753, 982
BspPI GGATC 3 cut(s) 704, 746, 759
BspT107I GGYRCC 1 cut(s) 980
BsrFI RCCGGY 3 cut(s) 212, 357, 462
BsrI ACTGG 3 cut(s) 337, 409, 559
BssAI RCCGGY 3 cut(s) 212, 357, 462
BssECI CCNNGG 3 cut(s) 61, 102, 482
BssMI GATC 4 cut(s) 697, 709, 751, 949
BssT1I CCWWGG 2 cut(s) 61, 102
Bst4CI ACNGT 4 cut(s) 507, 670, 798, 860
Bst6I CTCTTC 2 cut(s) 639, 1041
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 3 cut(s) 19, 272, 926
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 712
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 4 cut(s) 700, 712, 754, 952
BstMBI GATC 4 cut(s) 697, 709, 751, 949
BstMWI GCNNNNNNNGC 5 cut(s) 104, 138, 222, 619, 970
BstSFI CTRYAG 1 cut(s) 794
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 751, 949
BstYI RGATCY 2 cut(s) 751, 949
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 5 cut(s) 67, 88, 98, 107, 466
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 1 cut(s) 712
BtsIMutI CAGTG 1 cut(s) 865
Cac8I GCNNGC 1 cut(s) 112
CciI TCATGA 2 cut(s) 345, 694
Cfr10I RCCGGY 3 cut(s) 212, 357, 462
Cfr13I GGNCC 7 cut(s) 65, 87, 97, 355, 460, 472, 556
CseI GACGC 1 cut(s) 902
Csp6I GTAC 2 cut(s) 503, 981
CspAI ACCGGT 1 cut(s) 357
CviAII CATG 4 cut(s) 62, 346, 695, 1042
CviQI GTAC 2 cut(s) 503, 981
DdeI CTNAG 3 cut(s) 19, 272, 926
DpnI GATC 4 cut(s) 699, 711, 753, 951
DpnII GATC 4 cut(s) 697, 709, 751, 949
Eam1104I CTCTTC 2 cut(s) 639, 1041
EarI CTCTTC 2 cut(s) 639, 1041
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 61, 102
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 4 cut(s) 355, 460, 472, 556
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 663
EcoICRI GAGCTC 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 97
EcoT14I CCWWGG 2 cut(s) 61, 102
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 2 cut(s) 61, 102
FaeI CATG 4 cut(s) 65, 349, 698, 1045
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 1 cut(s) 515
FatI CATG 4 cut(s) 61, 345, 694, 1041
FauI CCCGC 2 cut(s) 119, 483
Fnu4HI GCNGC 5 cut(s) 50, 108, 196, 223, 269
FokI GGATG 1 cut(s) 719
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 5 cut(s) 50, 108, 196, 223, 269
FspBI CTAG 2 cut(s) 33, 425
GluI GCNGC 5 cut(s) 50, 108, 196, 223, 269
HaeIII GGCC 5 cut(s) 67, 88, 98, 107, 466
HapII CCGG 3 cut(s) 213, 358, 463
HgaI GACGC 1 cut(s) 902
Hin1II CATG 4 cut(s) 65, 349, 698, 1045
HinfI GANTC 6 cut(s) 276, 410, 511, 824, 830, 890
HpaII CCGG 3 cut(s) 213, 358, 463
HphI GGTGA 3 cut(s) 412, 419, 449
Hpy166II GTNNAC 1 cut(s) 564
Hpy188I TCNGA 4 cut(s) 253, 395, 785, 829
Hpy188III TCNNGA 4 cut(s) 71, 346, 695, 928
Hpy8I GTNNAC 1 cut(s) 564
Hpy99I CGWCG 2 cut(s) 10, 257
HpyAV CCTTC 3 cut(s) 131, 212, 718
HpyCH4III ACNGT 4 cut(s) 507, 670, 798, 860
HpyCH4IV ACGT 2 cut(s) 15, 547
HpyCH4V TGCA 5 cut(s) 52, 305, 772, 905, 1057
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 138, 222, 619, 970
HpyF3I CTNAG 3 cut(s) 19, 272, 926
HpySE526I ACGT 2 cut(s) 15, 547
Hsp92II CATG 4 cut(s) 65, 349, 698, 1045
KpnI GGTACC 1 cut(s) 984
Kzo9I GATC 4 cut(s) 697, 709, 751, 949
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 3 cut(s) 177, 759, 892
MaeI CTAG 2 cut(s) 33, 425
MaeII ACGT 2 cut(s) 15, 547
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 699, 711, 753, 951
MboI GATC 4 cut(s) 697, 709, 751, 949
MboII GAAGA 8 cut(s) 151, 334, 607, 647, 656, 740, 821, 1028
MflI RGATCY 2 cut(s) 751, 949
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 6 cut(s) 659, 738, 836, 844, 853, 895
MlyI GAGTC 2 cut(s) 818, 899
MmeI TCCRAC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 3 cut(s) 741, 852, 1060
MspI CCGG 3 cut(s) 213, 358, 463
Mva1269I GAATGC 1 cut(s) 915
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 5 cut(s) 104, 138, 222, 619, 970
NcoI CCATGG 1 cut(s) 61
NdeII GATC 4 cut(s) 697, 709, 751, 949
NlaIII CATG 4 cut(s) 65, 349, 698, 1045
NlaIV GGNNCC 5 cut(s) 99, 335, 474, 753, 982
NmuCI GTSAC 1 cut(s) 400
PagI TCATGA 2 cut(s) 345, 694
PctI GAATGC 1 cut(s) 915
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 4 cut(s) 276, 410, 511, 830
PinAI ACCGGT 1 cut(s) 357
PkrI GCNGC 5 cut(s) 51, 109, 197, 224, 270
PleI GAGTC 2 cut(s) 818, 898
PpsI GAGTC 2 cut(s) 818, 898
PsiI TTATAA 1 cut(s) 843
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 5 cut(s) 99, 335, 474, 753, 982
PspPI GGNCC 7 cut(s) 65, 87, 97, 355, 460, 472, 556
PsuI RGATCY 2 cut(s) 751, 949
RsaI GTAC 2 cut(s) 504, 982
RsaNI GTAC 2 cut(s) 503, 981
SacI GAGCTC 1 cut(s) 84
SaqAI TTAA 3 cut(s) 741, 852, 1060
SatI GCNGC 5 cut(s) 50, 108, 196, 223, 269
Sau3AI GATC 4 cut(s) 697, 709, 751, 949
Sau96I GGNCC 7 cut(s) 65, 87, 97, 355, 460, 472, 556
SchI GAGTC 2 cut(s) 818, 899
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 3 cut(s) 177, 759, 892
SfcI CTRYAG 1 cut(s) 794
SfiI GGCCNNNNNGGCC 1 cut(s) 104
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 4 cut(s) 355, 460, 472, 556
Sse9I AATT 6 cut(s) 659, 738, 836, 844, 853, 895
SsiI CCGC 9 cut(s) 108, 112, 166, 195, 207, 222, 240, 268, 476
SspMI CTAG 2 cut(s) 33, 425
SstI GAGCTC 1 cut(s) 84
StyI CCWWGG 2 cut(s) 61, 102
TaaI ACNGT 4 cut(s) 507, 670, 798, 860
TaiI ACGT 2 cut(s) 18, 550
TaqI TCGA 4 cut(s) 8, 72, 78, 135
TasI AATT 6 cut(s) 659, 738, 836, 844, 853, 895
TauI GCSGC 4 cut(s) 110, 198, 225, 271
TfiI GAWTC 4 cut(s) 276, 410, 511, 830
Tru1I TTAA 3 cut(s) 741, 852, 1060
Tru9I TTAA 3 cut(s) 741, 852, 1060
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 334, 362
TspGWI ACGGA 1 cut(s) 949
TspRI CASTG 1 cut(s) 865
VpaK11BI GGWCC 4 cut(s) 355, 460, 472, 556
XapI RAATTY 1 cut(s) 836
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 33, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.