Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030204.1

Orthogroup ID

OG0011445

Physical Location & Seq

Genomic Coordinates Reverse (-)

236 .. 2271

Gene Structure 2036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030204.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgtgtttctttgtacctggttcgaaagatgttgtactgcttgtaacttatgtcatgtgtggctttgttcgacaatgcagaaggctgaacttgctgtccttcggagaagaagctgaagaggaggagagagaattggcaactgtaaagacaaaaataaagagcagtcatgatctattggatgatcctcgtcttttgaaggaagaggttccaattaacgaagtggtaattatgtggtccaaggctgaaaacattgatgatgaccaaccaagggtagaaaagctgtcattgaagaaaaaagggataggatcagaggccaaagctgagcgcctggccaatgctgatacagacttacagctgttgaatgaagctgaaagaggaagacaattgcagaaacagaagaagcgtagaaaccaaggacgagaagaagaaacaatagcaagacttgagaagtttaagaagaccctttctgtgaagcccacagccccaggtagtgaatctggaggtggcgatggtgaagatttatctgattggcaaaaatctcagttaaaatttgctcctgagactggcaagatgactcgcactgaggacataaatgattatgttgtgcttgaccctcttttggagaagggaaaagagaagttcaaccggatgcaagcaaagcaaaaacgaagagagcgagaatgggctggcaaatctcttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055044 GO:0071012 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

234

Amino Acids

26.78

Weight (kDa)

8.29

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33060
fragaria_vesca	FvH4_2g31480 FvH4_2g31480 FvH4_2g31480 FvH4_2g31480
malus_domestica	MD08G1066000.v1.1 MD15G1055400.v1.1
prunus_persica	Prupe.1G408500_v2.0.a1
pyrus_communis	pycom15g05220
rosa_chinensis	RchiOBHm_Chr6g0311311
rosa_laevigata	RLG00000010418
rosa_multiflora	Rmu_sc0008536.1_g000004 Rmu_sc0030204.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157770
rosa_rugosa	Rorug06G0387100
rosa_samantha	Rh6AG502000 Rh6BG512700 Rh6CG518400 Rh6DG504600
rosa_wichuraiana	Rw6G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	176, 313
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	15, 36
AfiI	CCNNNNNNNGG	3 cut(s)	268, 563, 619
AgsI	TTSAA	4 cut(s)	196, 289, 361, 643
AjnI	CCWGG	3 cut(s)	16, 327, 484
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	5 cut(s)	113, 280, 320, 355, 368
AluI	AGCT	5 cut(s)	113, 280, 320, 355, 368
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	2 cut(s)	176, 313
AoxI	GGCC	2 cut(s)	312, 330
ApoI	RAATTY	1 cut(s)	548
Asp700I	GAANNNNTTC	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	524
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	385, 464
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	3 cut(s)	18, 329, 486
BcoDI	GTCTC	1 cut(s)	554
BfoI	RGCGCY	1 cut(s)	328
BlpI	GCTNAGC	1 cut(s)	321
Bme1390I	CCNGG	3 cut(s)	18, 329, 486
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	3 cut(s)	18, 329, 486
BmsI	GCATC	1 cut(s)	639
BpiI	GAAGAC	2 cut(s)	385, 464
BpmI	CTGGAG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	464
BsaJI	CCNNGG	4 cut(s)	237, 266, 412, 484
BsaWI	WCCGGW	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 563, 619
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	18, 329, 486
BseDI	CCNNGG	4 cut(s)	237, 266, 412, 484
BseGI	GGATG	2 cut(s)	184, 654
BseLI	CCNNNNNNNGG	3 cut(s)	268, 563, 619
BseMII	CTCAG	4 cut(s)	312, 549, 554, 573
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	2 cut(s)	134, 137
BshFI	GGCC	2 cut(s)	314, 332
BsiSI	CCGG	1 cut(s)	646
BslI	CCNNNNNNNGG	3 cut(s)	268, 563, 619
BsmAI	GTCTC	1 cut(s)	554
BsnI	GGCC	2 cut(s)	314, 332
Bsp119I	TTCGAA	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	169, 181, 305
Bsp1720I	GCTNAGC	1 cut(s)	321
BspANI	GGCC	2 cut(s)	314, 332
BspCNI	CTCAG	4 cut(s)	313, 550, 553, 574
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	2 cut(s)	176, 313
BspT104I	TTCGAA	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	4 cut(s)	237, 266, 412, 484
BssMI	GATC	3 cut(s)	169, 181, 305
BssT1I	CCWWGG	3 cut(s)	237, 266, 412
Bst2UI	CCWGG	3 cut(s)	18, 329, 486
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	3 cut(s)	111, 195, 664
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	2 cut(s)	654, 688
BstDEI	CTNAG	4 cut(s)	321, 540, 558, 582
BstF5I	GGATG	2 cut(s)	184, 654
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	3 cut(s)	172, 184, 308
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	3 cut(s)	169, 181, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	91, 658
BstNI	CCWGG	3 cut(s)	18, 329, 486
BstSCI	CCNGG	3 cut(s)	16, 327, 484
BstV2I	GAAGAC	2 cut(s)	385, 464
BsuRI	GGCC	2 cut(s)	314, 332
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	184, 654
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	2 cut(s)	654, 688
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	234
CsiI	ACCWGGT	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	14, 35
CviAII	CATG	2 cut(s)	55, 167
CviQI	GTAC	2 cut(s)	14, 35
DdeI	CTNAG	4 cut(s)	321, 540, 558, 582
DpnI	GATC	3 cut(s)	171, 183, 307
DpnII	GATC	3 cut(s)	169, 181, 305
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	3 cut(s)	111, 195, 664
EarI	CTCTTC	3 cut(s)	111, 195, 664
Eco130I	CCWWGG	3 cut(s)	237, 266, 412
Eco47I	GGWCC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	135
EcoRII	CCWGG	3 cut(s)	16, 327, 484
EcoT14I	CCWWGG	3 cut(s)	237, 266, 412
ErhI	CCWWGG	3 cut(s)	237, 266, 412
FaeI	CATG	2 cut(s)	58, 170
FaiI	YATR	6 cut(s)	51, 56, 168, 230, 590, 600
FatI	CATG	2 cut(s)	54, 166
FokI	GGATG	2 cut(s)	191, 661
GlaI	GCGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	314, 332
HapII	CCGG	1 cut(s)	646
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	58, 170
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	2 cut(s)	494, 574
HpaII	CCGG	1 cut(s)	646
HphI	GGTGA	1 cut(s)	524
Hpy188I	TCNGA	3 cut(s)	104, 310, 526
Hpy188III	TCNNGA	3 cut(s)	167, 498, 557
HpyAV	CCTTC	4 cut(s)	75, 109, 190, 619
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	78, 388, 652
HpyF10VI	GCNNNNNNNGC	2 cut(s)	91, 658
HpyF3I	CTNAG	4 cut(s)	321, 540, 558, 582
Hsp92II	CATG	2 cut(s)	58, 170
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	169, 181, 305
LmnI	GCTCC	1 cut(s)	559
LweI	GCATC	1 cut(s)	639
MabI	ACCWGGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	3 cut(s)	171, 183, 307
MboI	GATC	3 cut(s)	169, 181, 305
MfeI	CAATTG	1 cut(s)	383
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	5 cut(s)	131, 210, 225, 383, 548
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	568
MnlI	CCTC	9 cut(s)	112, 115, 195, 196, 304, 368, 494, 577, 624
Mox20I	TGGCCA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	3 cut(s)	213, 453, 545
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	1 cut(s)	646
MspR9I	CCNGG	3 cut(s)	18, 329, 486
MunI	CAATTG	1 cut(s)	383
MvaI	CCWGG	3 cut(s)	18, 329, 486
MwoI	GCNNNNNNNGC	2 cut(s)	91, 658
NdeII	GATC	3 cut(s)	169, 181, 305
NlaIII	CATG	2 cut(s)	58, 170
NlaIV	GGNNCC	1 cut(s)	207
NspV	TTCGAA	1 cut(s)	23
PagI	TCATGA	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	494
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	3 cut(s)	16, 327, 484
PspGI	CCWGG	3 cut(s)	16, 327, 484
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	234
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	15, 36
RsaNI	GTAC	2 cut(s)	14, 35
SaqAI	TTAA	3 cut(s)	213, 453, 545
Sau3AI	GATC	3 cut(s)	169, 181, 305
Sau96I	GGNCC	1 cut(s)	234
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	3 cut(s)	18, 329, 486
SetI	ASST	9 cut(s)	19, 115, 207, 282, 322, 357, 370, 490, 505
SexAI	ACCWGGT	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	639
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	5 cut(s)	131, 210, 225, 383, 548
StyD4I	CCNGG	3 cut(s)	16, 327, 484
StyI	CCWWGG	3 cut(s)	237, 266, 412
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	23, 70
TasI	AATT	5 cut(s)	131, 210, 225, 383, 548
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	213, 453, 545
Tru9I	TTAA	3 cut(s)	213, 453, 545
TscAI	CASTG	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.