FvH4_2g31480

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
24114262 .. 24118605
4344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31480.t1

Sequence Viewer

Length: 1485 bp
ATGTCGTCGATTTACGTACTAGAACCACCGACGAGAGGCAAGGTGGTGCTTCAAACGACCCATGGGCCGCTCGACATCGAGCTCTGGCCCAAAGAGGCTCCCAAGGCCGCCCGGAACTTCGTCCAGCTCTGCCTCGAAGGCTACTACGACAACACCATCTTCCACCGCATCATCAAAGGCTTCCTCGTCCAGGGCGGCGACCCCACCGGCACCGGCGAAGGCGGTGAAAGTATCTACGGCGGACCTTTCTCCGACGAGTTTCATTCCCGGCTGAGATTCAAGCATAGAGGATTAGTTGCTTGCGCAAATGCGAATAAGCCTAATACGAATGGGAGCCAGTTCTTCATGAACTTGGACCGCTCTGATTGGCTTGACAAGAAGCATACGATTTTCGGAAAGGTGACTGGGGATTCAATATACAATCTGGTGAGGTTGGGCGAGATTGAAACCAACAAGGATGACCGGCCTTTGGACCCACCGCCCAGGATATTATCAGTAGAGGTACTGTGGAATCCGTTTGATGATATTGTCCCTAGAGTGTCTTCACGTTCTTTGGTCCAAGCAGCAGATGATACTGACAACAAGGAGACGAAGAAGAAAGCTGTGAAAAAGCTGAACTTGCTGTCATTTGGAGAAGAAGCTGAAGAGGAGGAGAGAGAATTGGCAGCTGTAAAGACAAAAATAAAGAGCAGTCATGATGTATTGGATGATCCTCGTCTTCTAAAGGAAGAAGTTCCACTAACCGAAGTGGATCCTAAGACAAGGCAGGTCCAGTTATCTGTTAGAGAGGCTCTACAATCAAAGAAGGAAGACCCCTCGAAAAACTCAGAATCAAAATTTTATAATTCTCTTAATTACAGCGATAATGATGACGATGATAATGAGGTCAACTTTGATGCACGAATGCGTAATCAAATACTAAGGAAACGGAAGGAATTGGGAGATCACCCACCAAAGCCAAAGTTGCCAAACGGGAGCTCTAGCCCAAAGCAGCGCGAAGTAGCTGCAACAAGCTCAAAGGCTGAAAACTTTGACGATGACCAACCAAAGGTAGAGAAGCTGTCATTGAAGAAAAAAGGGATAGGTTCTGAGGCCAAAGCTGAGCGCATAGCCAATGCTGATGCAGACTTACAGCTTTTAAGTGAAGCTGAAAGAGGGAGACAATTGCAGAAACAGAAGAAGCGTAGAAACCAGGGACGAGAAGAAGAAACAATAGCAAGACTCGAGAAGTTTAAGAAGACCCTGTATGTGAAGCCTACGGCCCCAGATAATGAATCTGGAGGCGACGATGGCGAAGATTTATCTGATTGGCAAAAATCTCGGTTAAAATTTGCTCTTGAGACTGGAAAGATGACTCGCACTGAGGACGTAAATGATTATGTTGTGCATGACCCTCTTTTGGAGAAGGGAAAAGAGAAGTTCAACCGGATGCAAGCAAAGCAAAAACGAAGAGATCGAGAATGGGCTGGCAAATCTCTTACTTGA

Protein Analysis

495

Amino Acids

56.09

Weight (kDa)

7.67

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 15 - 168 2.6e-46 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011445)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 843
Acc16I TGCGCA 1 cut(s) 304
Acc36I ACCTGC 1 cut(s) 757
AccB1I GGYRCC 1 cut(s) 209
AccBSI CCGCTC 2 cut(s) 70, 360
AccII CGCG 1 cut(s) 996
AciI CCGC 8 cut(s) 68, 108, 166, 195, 222, 240, 358, 479
AclWI GGATC 3 cut(s) 704, 746, 759
AcsI RAATTY 2 cut(s) 836, 1328
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 2 cut(s) 18, 504
AfiI CCNNNNNNNGG 5 cut(s) 35, 190, 469, 1048, 1399
AgsI TTSAA 6 cut(s) 53, 280, 414, 446, 1069, 1423
AjnI CCWGG 3 cut(s) 189, 482, 1191
Alw21I GWGCWC 2 cut(s) 84, 980
Alw26I GTCTC 3 cut(s) 581, 1153, 1334
AlwI GGATC 3 cut(s) 704, 746, 759
Ama87I CYCGRG 1 cut(s) 1223
AoxI GGCC 6 cut(s) 65, 86, 105, 464, 1092, 1260
ApeKI GCWGC 4 cut(s) 563, 665, 991, 1004
ApoI RAATTY 2 cut(s) 836, 1328
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 3 cut(s) 305, 996, 1107
AspS9I GGNCC 8 cut(s) 65, 87, 242, 355, 472, 556, 769, 1261
AsuC2I CCSGG 2 cut(s) 112, 268
AsuHPI GGTGA 4 cut(s) 236, 412, 439, 938
AvaI CYCGRG 1 cut(s) 1223
AvaII GGWCC 5 cut(s) 242, 355, 472, 556, 769
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 84, 980
BbsI GAAGAC 4 cut(s) 534, 710, 816, 1244
Bbv12I GWGCWC 2 cut(s) 84, 980
BbvI GCAGC 4 cut(s) 575, 677, 991, 1003
BccI CCATC 2 cut(s) 164, 1283
BceAI ACGGC 2 cut(s) 253, 1275
BcgI CGANNNNNNTGC 4 cut(s) 986, 1020, 1301, 1335
BciT130I CCWGG 3 cut(s) 191, 484, 1193
BcnI CCSGG 2 cut(s) 112, 268
BcoDI GTCTC 3 cut(s) 581, 1153, 1334
BfaI CTAG 3 cut(s) 20, 534, 981
BfuAI ACCTGC 1 cut(s) 757
BglI GCCNNNNNGGC 1 cut(s) 138
BisI GCNGC 7 cut(s) 68, 108, 196, 564, 666, 992, 1005
BlpI GCTNAGC 1 cut(s) 1101
BlsI GCNGC 7 cut(s) 69, 109, 197, 565, 667, 993, 1006
Bme1390I CCNGG 5 cut(s) 112, 191, 268, 484, 1193
Bme18I GGWCC 5 cut(s) 242, 355, 472, 556, 769
BmeT110I CYCGRG 1 cut(s) 1223
BmgT120I GGNCC 8 cut(s) 65, 87, 242, 355, 472, 556, 769, 1261
BmiI GGNNCC 6 cut(s) 99, 211, 335, 474, 753, 1263
BmrFI CCNGG 5 cut(s) 112, 191, 268, 484, 1193
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 4 cut(s) 177, 886, 1111, 1419
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 4 cut(s) 534, 710, 816, 1244
BpmI CTGGAG 1 cut(s) 1299
Bpu1102I GCTNAGC 1 cut(s) 1101
BpuEI CTTGAG 1 cut(s) 1358
BpuMI CCSGG 2 cut(s) 112, 268
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 5 cut(s) 61, 102, 190, 482, 1192
BsaWI WCCGGW 1 cut(s) 1425
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 190, 469, 1048, 1399
Bse118I RCCGGY 3 cut(s) 206, 212, 462
Bse1I ACTGG 4 cut(s) 337, 409, 772, 1348
BseBI CCWGG 3 cut(s) 191, 484, 1193
BseDI CCNNGG 5 cut(s) 61, 102, 190, 482, 1192
BseGI GGATG 3 cut(s) 463, 712, 1434
BseLI CCNNNNNNNGG 5 cut(s) 35, 190, 469, 1048, 1399
BseMII CTCAG 5 cut(s) 263, 840, 1080, 1092, 1353
BseNI ACTGG 4 cut(s) 337, 409, 772, 1348
BseRI GAGGAG 2 cut(s) 662, 665
BseXI GCAGC 4 cut(s) 575, 677, 991, 1003
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 6 cut(s) 67, 88, 107, 466, 1094, 1262
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 2 cut(s) 84, 980
BsiHKCI CYCGRG 1 cut(s) 1223
BsiSI CCGG 6 cut(s) 112, 207, 213, 268, 463, 1426
BslFI GGGAC 2 cut(s) 515, 1209
BslI CCNNNNNNNGG 5 cut(s) 35, 190, 469, 1048, 1399
BsmAI GTCTC 3 cut(s) 581, 1153, 1334
BsmBI CGTCTC 1 cut(s) 581
BsmFI GGGAC 2 cut(s) 515, 1209
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 6 cut(s) 67, 88, 107, 466, 1094, 1262
BsoBI CYCGRG 1 cut(s) 1223
Bsp1286I GDGCHC 2 cut(s) 84, 980
Bsp143I GATC 4 cut(s) 709, 751, 943, 1453
Bsp1720I GCTNAGC 1 cut(s) 1101
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 8 cut(s) 68, 108, 166, 195, 222, 240, 358, 479
BspANI GGCC 6 cut(s) 67, 88, 107, 466, 1094, 1262
BspCNI CTCAG 5 cut(s) 264, 839, 1081, 1093, 1354
BspFNI CGCG 1 cut(s) 996
BspHI TCATGA 2 cut(s) 345, 694
BspLI GGNNCC 6 cut(s) 99, 211, 335, 474, 753, 1263
BspMI ACCTGC 1 cut(s) 757
BspPI GGATC 3 cut(s) 704, 746, 759
BspT107I GGYRCC 1 cut(s) 209
BsrBI CCGCTC 2 cut(s) 70, 360
BsrFI RCCGGY 3 cut(s) 206, 212, 462
BsrI ACTGG 4 cut(s) 337, 409, 772, 1348
BssAI RCCGGY 3 cut(s) 206, 212, 462
BssECI CCNNGG 5 cut(s) 61, 102, 190, 482, 1192
BssMI GATC 4 cut(s) 709, 751, 943, 1453
BssT1I CCWWGG 2 cut(s) 61, 102
Bst2UI CCWGG 3 cut(s) 191, 484, 1193
Bst4CI ACNGT 1 cut(s) 507
Bst6I CTCTTC 2 cut(s) 639, 1444
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 3 cut(s) 301, 1434, 1468
BstDEI CTNAG 7 cut(s) 272, 756, 826, 920, 1089, 1101, 1362
BstDSI CCRYGG 1 cut(s) 61
BstENI CCTNNNNNAGG 1 cut(s) 188
BstF5I GGATG 3 cut(s) 463, 712, 1434
BstFNI CGCG 1 cut(s) 996
BstHHI GCGC 3 cut(s) 305, 996, 1107
BstKTI GATC 4 cut(s) 712, 754, 946, 1456
BstMAI GTCTC 3 cut(s) 581, 1153, 1334
BstMBI GATC 4 cut(s) 709, 751, 943, 1453
BstMWI GCNNNNNNNGC 6 cut(s) 104, 138, 619, 964, 1290, 1438
BstNI CCWGG 3 cut(s) 191, 484, 1193
BstSCI CCNGG 5 cut(s) 110, 189, 266, 482, 1191
BstSNI TACGTA 1 cut(s) 16
BstUI CGCG 1 cut(s) 996
BstV1I GCAGC 4 cut(s) 575, 677, 991, 1003
BstV2I GAAGAC 4 cut(s) 534, 710, 816, 1244
BstX2I RGATCY 1 cut(s) 751
BstYI RGATCY 1 cut(s) 751
BsuRI GGCC 6 cut(s) 67, 88, 107, 466, 1094, 1262
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 3 cut(s) 463, 712, 1434
BtsIMutI CAGTG 1 cut(s) 1359
BveI ACCTGC 1 cut(s) 757
Cac8I GCNNGC 3 cut(s) 301, 1434, 1468
CciI TCATGA 2 cut(s) 345, 694
CfoI GCGC 3 cut(s) 305, 996, 1107
Cfr10I RCCGGY 3 cut(s) 206, 212, 462
Cfr13I GGNCC 8 cut(s) 65, 87, 242, 355, 472, 556, 769, 1261
Csp6I GTAC 2 cut(s) 17, 503
CviAII CATG 4 cut(s) 62, 346, 695, 1388
CviQI GTAC 2 cut(s) 17, 503
DdeI CTNAG 7 cut(s) 272, 756, 826, 920, 1089, 1101, 1362
DpnI GATC 4 cut(s) 711, 753, 945, 1455
DpnII GATC 4 cut(s) 709, 751, 943, 1453
Eam1104I CTCTTC 2 cut(s) 639, 1444
EarI CTCTTC 2 cut(s) 639, 1444
EciI GGCGGA 1 cut(s) 255
Ecl136II GAGCTC 2 cut(s) 82, 978
Eco105I TACGTA 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 61, 102
Eco24I GRGCYC 2 cut(s) 84, 980
Eco47I GGWCC 5 cut(s) 242, 355, 472, 556, 769
Eco53kI GAGCTC 2 cut(s) 82, 978
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 1223
EcoICRI GAGCTC 2 cut(s) 82, 978
EcoNI CCTNNNNNAGG 1 cut(s) 188
EcoRII CCWGG 3 cut(s) 189, 482, 1191
EcoT14I CCWWGG 2 cut(s) 61, 102
EcoT38I GRGCYC 2 cut(s) 84, 980
ErhI CCWWGG 2 cut(s) 61, 102
Esp3I CGTCTC 1 cut(s) 581
FaeI CATG 4 cut(s) 65, 349, 698, 1391
FalI AAGNNNNNCTT 2 cut(s) 602, 634
FaqI GGGAC 2 cut(s) 515, 1209
FatI CATG 4 cut(s) 61, 345, 694, 1387
Fnu4HI GCNGC 7 cut(s) 68, 108, 196, 564, 666, 992, 1005
FokI GGATG 3 cut(s) 470, 719, 1441
FriOI GRGCYC 2 cut(s) 84, 980
Fsp4HI GCNGC 7 cut(s) 68, 108, 196, 564, 666, 992, 1005
FspBI CTAG 3 cut(s) 20, 534, 981
FspI TGCGCA 1 cut(s) 304
GlaI GCGC 3 cut(s) 304, 995, 1106
GluI GCNGC 7 cut(s) 68, 108, 196, 564, 666, 992, 1005
GsuI CTGGAG 1 cut(s) 1299
HaeIII GGCC 6 cut(s) 67, 88, 107, 466, 1094, 1262
HapII CCGG 6 cut(s) 112, 207, 213, 268, 463, 1426
HhaI GCGC 3 cut(s) 305, 996, 1107
Hin1II CATG 4 cut(s) 65, 349, 698, 1391
Hin6I GCGC 3 cut(s) 303, 994, 1105
HinP1I GCGC 3 cut(s) 303, 994, 1105
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HinfI GANTC 7 cut(s) 276, 410, 511, 830, 1221, 1274, 1354
HpaII CCGG 6 cut(s) 112, 207, 213, 268, 463, 1426
HphI GGTGA 4 cut(s) 236, 412, 439, 938
Hpy166II GTNNAC 1 cut(s) 889
Hpy188I TCNGA 6 cut(s) 253, 364, 395, 829, 1090, 1306
Hpy188III TCNNGA 6 cut(s) 346, 695, 1225, 1278, 1337, 1457
Hpy8I GTNNAC 1 cut(s) 889
Hpy99I CGWCG 4 cut(s) 10, 34, 257, 1289
HpyAV CCTTC 5 cut(s) 131, 212, 799, 925, 1399
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4IV ACGT 3 cut(s) 15, 547, 1368
HpyCH4V TGCA 6 cut(s) 899, 1007, 1124, 1168, 1387, 1432
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 138, 619, 964, 1290, 1438
HpyF3I CTNAG 7 cut(s) 272, 756, 826, 920, 1089, 1101, 1362
HpySE526I ACGT 3 cut(s) 15, 547, 1368
Hsp92II CATG 4 cut(s) 65, 349, 698, 1391
HspAI GCGC 3 cut(s) 303, 994, 1105
Kzo9I GATC 4 cut(s) 709, 751, 943, 1453
LmnI GCTCC 3 cut(s) 103, 333, 975
Lsp1109I GCAGC 4 cut(s) 575, 677, 991, 1003
LweI GCATC 4 cut(s) 177, 886, 1111, 1419
MaeI CTAG 3 cut(s) 20, 534, 981
MaeII ACGT 3 cut(s) 15, 547, 1368
MaeIII GTNAC 1 cut(s) 400
MalI GATC 4 cut(s) 711, 753, 945, 1455
MbiI CCGCTC 2 cut(s) 70, 360
MboI GATC 4 cut(s) 709, 751, 943, 1453
MfeI CAATTG 1 cut(s) 1163
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 2 cut(s) 84, 980
MluCI AATT 7 cut(s) 659, 836, 844, 853, 935, 1163, 1328
MlyI GAGTC 2 cut(s) 1215, 1348
MmeI TCCRAC 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 4 cut(s) 852, 1139, 1233, 1325
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 6 cut(s) 112, 207, 213, 268, 463, 1426
MspR9I CCNGG 5 cut(s) 112, 191, 268, 484, 1193
MunI CAATTG 1 cut(s) 1163
Mva1269I GAATGC 1 cut(s) 909
MvaI CCWGG 3 cut(s) 191, 484, 1193
MvnI CGCG 1 cut(s) 996
MwoI GCNNNNNNNGC 6 cut(s) 104, 138, 619, 964, 1290, 1438
NciI CCSGG 2 cut(s) 112, 268
NcoI CCATGG 1 cut(s) 61
NdeII GATC 4 cut(s) 709, 751, 943, 1453
NlaIII CATG 4 cut(s) 65, 349, 698, 1391
NlaIV GGNNCC 6 cut(s) 99, 211, 335, 474, 753, 1263
NmuCI GTSAC 1 cut(s) 400
NsbI TGCGCA 1 cut(s) 304
PaeR7I CTCGAG 1 cut(s) 1223
PagI TCATGA 2 cut(s) 345, 694
PcsI WCGNNNNNNNCGW 1 cut(s) 1453
PctI GAATGC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 5 cut(s) 276, 410, 511, 830, 1274
PkrI GCNGC 7 cut(s) 69, 109, 197, 565, 667, 993, 1006
PleI GAGTC 2 cut(s) 1215, 1348
PpsI GAGTC 2 cut(s) 1215, 1348
Ppu21I YACGTR 1 cut(s) 16
PsiI TTATAA 1 cut(s) 843
Psp124BI GAGCTC 2 cut(s) 84, 980
Psp6I CCWGG 3 cut(s) 189, 482, 1191
PspGI CCWGG 3 cut(s) 189, 482, 1191
PspN4I GGNNCC 6 cut(s) 99, 211, 335, 474, 753, 1263
PspPI GGNCC 8 cut(s) 65, 87, 242, 355, 472, 556, 769, 1261
PsuI RGATCY 1 cut(s) 751
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 2 cut(s) 18, 504
RsaNI GTAC 2 cut(s) 17, 503
SacI GAGCTC 2 cut(s) 84, 980
SaqAI TTAA 4 cut(s) 852, 1139, 1233, 1325
SatI GCNGC 7 cut(s) 68, 108, 196, 564, 666, 992, 1005
Sau3AI GATC 4 cut(s) 709, 751, 943, 1453
Sau96I GGNCC 8 cut(s) 65, 87, 242, 355, 472, 556, 769, 1261
SchI GAGTC 2 cut(s) 1215, 1348
ScrFI CCNGG 5 cut(s) 112, 191, 268, 484, 1193
SduI GDGCHC 2 cut(s) 84, 980
SfaNI GCATC 4 cut(s) 177, 886, 1111, 1419
Sfr274I CTCGAG 1 cut(s) 1223
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 5 cut(s) 242, 355, 472, 556, 769
SlaI CTCGAG 1 cut(s) 1223
SmlI CTYRAG 2 cut(s) 1223, 1337
SmoI CTYRAG 2 cut(s) 1223, 1337
SnaBI TACGTA 1 cut(s) 16
Sse9I AATT 7 cut(s) 659, 836, 844, 853, 935, 1163, 1328
SsiI CCGC 8 cut(s) 68, 108, 166, 195, 222, 240, 358, 479
SspMI CTAG 3 cut(s) 20, 534, 981
SstI GAGCTC 2 cut(s) 84, 980
StyD4I CCNGG 5 cut(s) 110, 189, 266, 482, 1191
StyI CCWWGG 2 cut(s) 61, 102
TaaI ACNGT 1 cut(s) 507
TaiI ACGT 3 cut(s) 18, 550, 1371
TaqI TCGA 7 cut(s) 8, 72, 78, 135, 818, 1224, 1456
TasI AATT 7 cut(s) 659, 836, 844, 853, 935, 1163, 1328
TauI GCSGC 3 cut(s) 70, 110, 198
TfiI GAWTC 5 cut(s) 276, 410, 511, 830, 1274
Tru1I TTAA 4 cut(s) 852, 1139, 1233, 1325
Tru9I TTAA 4 cut(s) 852, 1139, 1233, 1325
TscAI CASTG 1 cut(s) 1366
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 4 cut(s) 563, 665, 991, 1004
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 4 cut(s) 251, 334, 362, 1287
TspGWI ACGGA 2 cut(s) 504, 943
TspRI CASTG 1 cut(s) 1366
VpaK11BI GGWCC 5 cut(s) 242, 355, 472, 556, 769
XagI CCTNNNNNAGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 836, 1328
XhoI CTCGAG 1 cut(s) 1223
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 3 cut(s) 20, 534, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.