Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0011445

Physical Location & Seq

Genomic Coordinates Forward (+)

5279500 .. 5281237

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1066000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCGTCGATATACGTTTTAGAGCCGCCGACGAAGGGCAACGTGGTGCTGCAAACAACGCACGGACCACTCGACGTGGAGCTCTGGCCCAAAGAGGCTCCGAAGGCCGTCAGGAACTTCGTGCAGCTCTGCCTTGAAGGCTACTACGACAACACCATCTTCCACCGCATTATCAAAGGCTTCCTGGTTCAGGGCGGCGACCCCACCGGCTCCGGCACAGGGGGTGAGAGTATTTATGGAAGTGTTTTTCCTGATGAGTTTCATTCGCGTTTGAGATTCAAGCATATGGGTTCAGTCGCTTGTGCAAATGCCGGTACACCCAATTCGAATGGGAGCCAGTTTTTCATGAACTTGGATCGGAGTGATTGGCTTGACAAGAAGCATACCATCTTCGGAAAGGTAACTGGGGATTCAATATATAATCTTGTGAGGTTGGGTGAACTAGAAACTGACAAGGAGGATCGGCCGTTGGACCCGCCCCCAAGGATACTATCAGTAGAGAATCCCTTTGATGACATTTTTCCAAGAGTACGTGCAAAGCATTCGACGGAATCCAAAAATAATACTGGCAACAAAGATATAAAGAAGAAAGCTGTAAAAAAGCTGAACTTGCTTTCGTTTGGAGAAGAAGCTGAAGAAGAGGAGAAAGAATTGGCAGCTGTAAAGACAAAAATCAAGAGCAGTCACGATGTAATGGATGATCCTCGCCTTCTGAAGGACGAAGTTCCAATTAACGAATCGAACTTTGATTCCAAAACAAAGCATGTACAGTTATCTGTCTCTAAAGCTCCAAGAAAGAAGAGCCCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0030054 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0055044 GO:0071012 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

271

Amino Acids

30.14

Weight (kDa)

7.1

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	15 - 167	1.3e-45	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33060
fragaria_vesca	FvH4_2g31480 FvH4_2g31480 FvH4_2g31480 FvH4_2g31480
malus_domestica	MD08G1066000.v1.1 MD15G1055400.v1.1
prunus_persica	Prupe.1G408500_v2.0.a1
pyrus_communis	pycom15g05220
rosa_chinensis	RchiOBHm_Chr6g0311311
rosa_laevigata	RLG00000010418
rosa_multiflora	Rmu_sc0008536.1_g000004 Rmu_sc0030204.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157770
rosa_rugosa	Rorug06G0387100
rosa_samantha	Rh6AG502000 Rh6BG512700 Rh6CG518400 Rh6DG504600
rosa_wichuraiana	Rw6G043720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	268
AciI	CCGC	4 cut(s)	26, 166, 195, 476
AclWI	GGATC	3 cut(s)	363, 468, 695
AcoI	YGGCCR	1 cut(s)	464
AcuI	CTGAAG	2 cut(s)	654, 734
AfaI	GTAC	3 cut(s)	316, 531, 768
AfiI	CCNNNNNNNGG	4 cut(s)	35, 190, 219, 715
AgsI	TTSAA	3 cut(s)	137, 280, 414
AjiI	CACGTC	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	183, 805
AloI	GAACNNNNNNTCC	2 cut(s)	734, 766
AluBI	AGCT	7 cut(s)	82, 127, 593, 604, 632, 659, 788
AluI	AGCT	7 cut(s)	82, 127, 593, 604, 632, 659, 788
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	784
AlwI	GGATC	3 cut(s)	363, 468, 695
AoxI	GGCC	3 cut(s)	86, 105, 464
ApeKI	GCWGC	3 cut(s)	49, 124, 656
AspS9I	GGNCC	3 cut(s)	65, 87, 472
AsuHPI	GGTGA	2 cut(s)	236, 449
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	65, 472
BanII	GRGCYC	2 cut(s)	84, 806
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	36, 136, 668
BccI	CCATC	2 cut(s)	164, 395
BceAI	ACGGC	2 cut(s)	92, 451
BcgI	CGANNNNNNTGC	2 cut(s)	525, 559
BciT130I	CCWGG	2 cut(s)	185, 807
BciVI	GTATCC	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	480
BglI	GCCNNNNNGGC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	26, 50, 125, 196, 657
BlsI	GCNGC	5 cut(s)	27, 51, 126, 197, 658
Bme1390I	CCNGG	2 cut(s)	185, 807
Bme18I	GGWCC	2 cut(s)	65, 472
BmgBI	CACGTC	1 cut(s)	76
BmgT120I	GGNCC	3 cut(s)	65, 87, 472
BmiI	GGNNCC	4 cut(s)	99, 211, 335, 474
BmrFI	CCNGG	2 cut(s)	185, 807
BmrI	ACTGGG	1 cut(s)	414
BmuI	ACTGGG	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	533
BsaJI	CCNNGG	2 cut(s)	482, 805
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 190, 219, 715
Bse118I	RCCGGY	2 cut(s)	206, 311
Bse1I	ACTGG	3 cut(s)	337, 409, 571
BseBI	CCWGG	2 cut(s)	185, 807
BseDI	CCNNGG	2 cut(s)	482, 805
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	4 cut(s)	35, 190, 219, 715
BseNI	ACTGG	3 cut(s)	337, 409, 571
BseRI	GAGGAG	1 cut(s)	656
BseX3I	CGGCCG	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	36, 136, 668
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	268
Bsh1285I	CGRYCG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	88, 107, 466
BsiEI	CGRYCG	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	3 cut(s)	207, 213, 312
BslI	CCNNNNNNNGG	4 cut(s)	35, 190, 219, 715
BsmAI	GTCTC	1 cut(s)	784
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	3 cut(s)	88, 107, 466
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	84, 806
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	3 cut(s)	355, 460, 700
BspACI	CCGC	4 cut(s)	26, 166, 195, 476
BspANI	GGCC	3 cut(s)	88, 107, 466
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	4 cut(s)	99, 211, 335, 474
BspPI	GGATC	3 cut(s)	363, 468, 695
BspQI	GCTCTTC	1 cut(s)	794
BspT104I	TTCGAA	1 cut(s)	326
BsrFI	RCCGGY	2 cut(s)	206, 311
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	3 cut(s)	337, 409, 571
BssAI	RCCGGY	2 cut(s)	206, 311
BssECI	CCNNGG	2 cut(s)	482, 805
BssMI	GATC	3 cut(s)	355, 460, 700
BssT1I	CCWWGG	1 cut(s)	482
Bst2UI	CCWGG	2 cut(s)	185, 807
Bst4CI	ACNGT	1 cut(s)	771
Bst6I	CTCTTC	2 cut(s)	633, 794
BstAUI	TGTACA	1 cut(s)	766
BstBAI	YACGTR	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	326
BstENI	CCTNNNNNAGG	2 cut(s)	188, 713
BstF5I	GGATG	1 cut(s)	703
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	358, 463, 703
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	3 cut(s)	355, 460, 700
BstMCI	CGRYCG	1 cut(s)	467
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 104, 138, 610
BstNI	CCWGG	2 cut(s)	185, 807
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	2 cut(s)	183, 805
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	3 cut(s)	36, 136, 668
BstZI	CGGCCG	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	88, 107, 466
BtrI	CACGTC	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	703
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	2 cut(s)	206, 311
Cfr13I	GGNCC	3 cut(s)	65, 87, 472
Csp6I	GTAC	3 cut(s)	315, 530, 767
CviAII	CATG	2 cut(s)	346, 764
CviQI	GTAC	3 cut(s)	315, 530, 767
DpnI	GATC	3 cut(s)	357, 462, 702
DpnII	GATC	3 cut(s)	355, 460, 700
EaeI	YGGCCR	1 cut(s)	464
EagI	CGGCCG	1 cut(s)	464
Eam1104I	CTCTTC	2 cut(s)	633, 794
EarI	CTCTTC	2 cut(s)	633, 794
Ecl136II	GAGCTC	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	464
Eco130I	CCWWGG	1 cut(s)	482
Eco24I	GRGCYC	2 cut(s)	84, 806
Eco47I	GGWCC	2 cut(s)	65, 472
Eco52I	CGGCCG	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	654, 734
EcoICRI	GAGCTC	1 cut(s)	82
EcoNI	CCTNNNNNAGG	2 cut(s)	188, 713
EcoRII	CCWGG	2 cut(s)	183, 805
EcoT14I	CCWWGG	1 cut(s)	482
EcoT38I	GRGCYC	2 cut(s)	84, 806
ErhI	CCWWGG	1 cut(s)	482
FaeI	CATG	2 cut(s)	349, 767
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	2 cut(s)	345, 763
FauI	CCCGC	1 cut(s)	483
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	5 cut(s)	26, 50, 125, 196, 657
FokI	GGATG	1 cut(s)	710
FriOI	GRGCYC	2 cut(s)	84, 806
Fsp4HI	GCNGC	5 cut(s)	26, 50, 125, 196, 657
FspBI	CTAG	1 cut(s)	443
GluI	GCNGC	5 cut(s)	26, 50, 125, 196, 657
HaeIII	GGCC	3 cut(s)	88, 107, 466
HapII	CCGG	3 cut(s)	207, 213, 312
Hin1II	CATG	2 cut(s)	349, 767
HinfI	GANTC	6 cut(s)	276, 410, 502, 551, 737, 749
HpaII	CCGG	3 cut(s)	207, 213, 312
HphI	GGTGA	2 cut(s)	236, 449
Hpy166II	GTNNAC	2 cut(s)	317, 440
Hpy188I	TCNGA	4 cut(s)	102, 360, 395, 714
Hpy188III	TCNNGA	5 cut(s)	112, 251, 346, 676, 686
Hpy8I	GTNNAC	2 cut(s)	317, 440
Hpy99I	CGWCG	4 cut(s)	10, 34, 77, 550
HpyAV	CCTTC	5 cut(s)	28, 97, 131, 709, 719
HpyCH4III	ACNGT	1 cut(s)	771
HpyCH4IV	ACGT	4 cut(s)	15, 42, 75, 532
HpyCH4V	TGCA	4 cut(s)	52, 124, 305, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 104, 138, 610
HpySE526I	ACGT	4 cut(s)	15, 42, 75, 532
Hsp92II	CATG	2 cut(s)	349, 767
Kzo9I	GATC	3 cut(s)	355, 460, 700
LguI	GCTCTTC	1 cut(s)	794
LmnI	GCTCC	5 cut(s)	79, 103, 215, 333, 793
Lsp1109I	GCAGC	3 cut(s)	36, 136, 668
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	4 cut(s)	15, 42, 75, 532
MaeIII	GTNAC	2 cut(s)	400, 683
MalI	GATC	3 cut(s)	357, 462, 702
MboI	GATC	3 cut(s)	355, 460, 700
MboII	GAAGA	7 cut(s)	151, 382, 598, 638, 647, 650, 811
MhlI	GDGCHC	2 cut(s)	84, 806
MluCI	AATT	3 cut(s)	322, 650, 729
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	5 cut(s)	88, 423, 451, 634, 714
MseI	TTAA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	3 cut(s)	207, 213, 312
MspR9I	CCNGG	2 cut(s)	185, 807
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	2 cut(s)	185, 807
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	58, 104, 138, 610
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	3 cut(s)	355, 460, 700
NlaIII	CATG	2 cut(s)	349, 767
NlaIV	GGNNCC	4 cut(s)	99, 211, 335, 474
NmuCI	GTSAC	1 cut(s)	683
NspI	RCATGY	1 cut(s)	767
NspV	TTCGAA	1 cut(s)	326
PagI	TCATGA	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	794
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	6 cut(s)	276, 410, 502, 551, 737, 749
PkrI	GCNGC	5 cut(s)	27, 51, 126, 197, 658
Ppu21I	YACGTR	1 cut(s)	533
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	183, 805
PspGI	CCWGG	2 cut(s)	183, 805
PspN4I	GGNNCC	4 cut(s)	99, 211, 335, 474
PspPI	GGNCC	3 cut(s)	65, 87, 472
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	316, 531, 768
RsaNI	GTAC	3 cut(s)	315, 530, 767
SacI	GAGCTC	1 cut(s)	84
SapI	GCTCTTC	1 cut(s)	794
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	5 cut(s)	26, 50, 125, 196, 657
Sau3AI	GATC	3 cut(s)	355, 460, 700
Sau96I	GGNCC	3 cut(s)	65, 87, 472
ScrFI	CCNGG	2 cut(s)	185, 807
SduI	GDGCHC	2 cut(s)	84, 806
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	2 cut(s)	65, 472
Sse9I	AATT	3 cut(s)	322, 650, 729
SsiI	CCGC	4 cut(s)	26, 166, 195, 476
SspMI	CTAG	1 cut(s)	443
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	183, 805
StyI	CCWWGG	1 cut(s)	482
TaaI	ACNGT	1 cut(s)	771
TaiI	ACGT	4 cut(s)	18, 45, 78, 535
TaqI	TCGA	5 cut(s)	8, 72, 326, 545, 740
TasI	AATT	3 cut(s)	322, 650, 729
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	2 cut(s)	28, 198
TfiI	GAWTC	6 cut(s)	276, 410, 502, 551, 737, 749
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	3 cut(s)	49, 124, 656
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	3 cut(s)	251, 334, 362
TspGWI	ACGGA	2 cut(s)	78, 563
VpaK11BI	GGWCC	2 cut(s)	65, 472
XagI	CCTNNNNNAGG	2 cut(s)	188, 713
XceI	RCATGY	1 cut(s)	767
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.